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Created with Raphaël 2.2.017Feb9Dec429Nov28272019fast-forward revision changesv1.3 mainv1.3 mainupdated README for submissionv1.2v1.2fixed test/submit confusionadded test provisionadding more information to GFF and EMBL filedocumenting the decision to omit exons from the EMBL filethis took so long that a new version of the validator was releasedmanually replacing erroneous gene modelmanual removal of empty fields in GFF3 fileemapper source now noted as textspecify input directoryupdate files to be usedfall back to pseudo= tag instead of editing the GFFinclude emapper description, use ENA specificationnow renaming pseudochromosomes appropriatelyfixed paths, added validate scriptwrapper for functional input notebook; fixed double/missing semicolonsmakefile for ease of usechecks and balances for ENA submissionreorderingbuild mRNA kill list for AGATnow running on clusteradd eggNOG-mapper preferred name to GFFsorted out GFF creationMerge branch 'main' of github.com:galicae/plit-genomere-organising submission folderUpdated zenodo linkadded ENA study accessionadded DOI badgeUpdate LICENSE to GPL3.0v1.1v1.1added genome assembly progressv1.0v1.0genes.sh contextadded hox alignment scriptmain README draftednow pointing to gene predictionadded overview of Zenodo filesignore MacOS hidden folderssubmission codecontext for analysis notebooksgenome annotation