Commits · main · zoology / plit-genome · GitLab

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May 21, 2025
- better plotting · 20e5441e
  Niko (Nikolaos) Papadopoulos authored 1 week ago
  
  20e5441e
Feb 17, 2025
- fast-forward revision changes · 8385be53
  Niko (Nikolaos) Papadopoulos authored 3 months ago
  
  View commits for tag v1.3 v1.3
  
  8385be53
Dec 09, 2024
- updated README for submission · c7d11977
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  
  View commits for tag v1.2 v1.2
  
  c7d11977
- fixed test/submit confusion · 7c6fd65d
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  
  7c6fd65d
Dec 04, 2024
- added test provision · 032e4673
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  
  032e4673
- adding more information to GFF and EMBL file · aa0a40fd
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  
  aa0a40fd
- documenting the decision to omit exons from the EMBL file · 8b91326f
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  8b91326f
- this took so long that a new version of the validator was released · 68dfc6d1
  Niko (Nikolaos) Papadopoulos authored 5 months ago
  
  68dfc6d1
Nov 29, 2024
- manually replacing erroneous gene model · 1448fec7
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  1448fec7
- manual removal of empty fields in GFF3 file · 998c1c3d
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  998c1c3d
- emapper source now noted as text · 74ef0b50
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  74ef0b50
Nov 28, 2024
- specify input directory · 4013f6c5
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  4013f6c5
- update files to be used · a26e1da2
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  a26e1da2
- fall back to pseudo= tag instead of editing the GFF · b96bfe8e
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  b96bfe8e
- include emapper description, use ENA specification · 4c3735a2
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  4c3735a2
- now renaming pseudochromosomes appropriately · 5a3aa67f
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  5a3aa67f
Nov 27, 2024
- fixed paths, added validate script · b387ad91
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  b387ad91
- wrapper for functional input notebook; fixed double/missing semicolons · 0bdd277c
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  0bdd277c
- makefile for ease of use · 1abeee81
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  1abeee81
- checks and balances for ENA submission · 25ec3b3b
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  25ec3b3b
- reordering · 26459b84
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  26459b84
- build mRNA kill list for AGAT · dc923a70
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  dc923a70
- now running on cluster · c33f2ad0
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  c33f2ad0
- add eggNOG-mapper preferred name to GFF · fdb02d43
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  fdb02d43
- sorted out GFF creation · 500a24a6
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  500a24a6
- Merge branch 'main' of github.com:galicae/plit-genome · 5d39c13d
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  5d39c13d
- re-organising submission folder · 3031847f
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  3031847f
Nov 20, 2024
- Updated zenodo link · 137bfedb
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  137bfedb
- added ENA study accession · b0e43fbe
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  b0e43fbe
Nov 19, 2024
- added DOI badge · 6e0dcaed
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  6e0dcaed
- Update LICENSE to GPL3.0 · bd9cd960
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  View commits for tag v1.1 v1.1
  
  bd9cd960
- added genome assembly progress · 1c658636
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  View commits for tag v1.0 v1.0
  
  1c658636
- genes.sh context · e822cfea
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  e822cfea
- added hox alignment script · 2fc2957d
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  2fc2957d
- main README drafted · a7959056
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  a7959056
- now pointing to gene prediction · c086e6d7
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  c086e6d7
- added overview of Zenodo files · a40f90aa
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  a40f90aa
- ignore MacOS hidden folders · 56deb851
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  56deb851
- submission code · 7367f442
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  7367f442
- context for analysis notebooks · 5f2777fb
  Niko (Nikolaos) Papadopoulos authored 6 months ago
  
  5f2777fb