genome annotation

06-annotation/.DS_Store

06-annotation/README.md

06-annotation/annot-trnascan.sh

06-annotation/annot1-braker.sh

06-annotation/annot1-isoseq-map.sh

06-annotation/annot1-isoseq_confirm.ipynb

06-annotation/annot2-RNA-extract_uncovered.sh

06-annotation/annot2-RNA-extracts.sh

06-annotation/annot2-braker.sh

06-annotation/annot3-RNA-01-extract_complete_ORFs.sh

06-annotation/annot3-RNA-01-filter_assemblies.sh

06-annotation/annot3-RNA-02-map_assemblies.sh

06-annotation/annot3-RNA-02-map_assembly_single.sh

06-annotation/annot3-RNA-03-pack_sam.sh

06-annotation/annot3-RNA-03-pack_sams.sh

06-annotation/annot3-RNA-04-denovo_mining.ipynb

06-annotation/install_braker.md

06-annotation/prep-RNA-bam.sh

06-annotation/prep-RNA-index_bam.sh

06-annotation/prep-RNA-map-all.sh