add README

SYSTEM_SETUP.txt → README

-This file documents the required steps to get the SMILE SXI EGSE up and running on a freshly installed linux system.
+This file documents the required steps to get the SMILE SXI EGSE up and running on a freshly installed Manjaro Linux system.
 
-manjaro-xfce-21.0.5 linux5.10 VBOX
+manjaro-xfce-21.0.5 linux5.10
 
 1) install MySQL/MariaDB and set it up
     - mariadb
@@ -15,7 +15,7 @@ manjaro-xfce-21.0.5 linux5.10 VBOX
 
 2) install packages/devtools
     - gtksourceview3 [<=3.24.11-1]
-    - ipython
+    - ipython [<=7.31]
     - make
 
 3) install python modules
@@ -35,7 +35,7 @@ manjaro-xfce-21.0.5 linux5.10 VBOX
 4) get EGSE repository
     $> git clone gitlab.phaidra.org/mecinam2/CCS.git
     
-5) In CCS, make DB schemas and Python packages
+5) In CCS directory, make DB schemas and Python packages
     - first configure egse.cfg
     
     $> make ccs-storage

setup_environment.rst

-clone the project GIT repository
-================================
-git clone ssh://smile@herschel.astro.univie.ac.at:1722/home/smile/OBSW.git
-
-
-install the GNU Make and Python package management system PIP
-=============================================================
-sudo apt install make
-sudo apt install python3-pip
-
-
-install sphinx for python3 + rtd theme for building documentation
-=================================================================
-sudo apt install python3-sphinx
-pip3 install -U sphinx
-pip3 install -U sphinx_rtd_theme
-
-
-install the 'confignator' python package
-========================================
-Execute the Make-file in the implementation folder. Open the terminal change to the implementation folder and execute 'make install-confignator'
-
-
-change the name and email of the git user
-=========================================
-git config --global --edit
-git commit --amend --reset-author
-
-
-Python modules
-==============
-pip3 install -U psutil
-pip3 install -U bitstring
-pip3 install -U sqlalchemy
-pip3 install -U numpy
-pip3 install -U crcmod
-pip3 install -U astropy
-pip3 install -U matplotlib
-pip3 install -U rlipython  # nur für altes CHEOPS Projekt
-pip3 install -U pydbus
-pip3 install -U wheel
-
-
-install MySql server
-====================
-sudo apt install mysql-server
-sudo mysql_secure_installation utility
-
-login into the MySQL shell as root and create an user and a database:
-sudo mysql -u root -p
-CREATE USER 'smile'@'localhost' IDENTIFIED BY 'letssmile';
-CREATE DATABASE smiledb;
-GRANT ALL PRIVILEGES ON smiledb . * TO 'smile'@'localhost';
-FLUSH PRIVILEGES;
-
-change the password policy (if necessary)
-SET GLOBAL validate_password_policy=LOW;
-
-install MySQL Python modules
-============================
-sudo apt install python-mysqldb
-sudo apt install default-libmysqlclient-dev
-
-
-# pip3 install mysql
-# pip3 install mysql-python
-# pip3 install mysqlclient
-
-
-
-to compile the C code of CrIa, FwProfile, CrObc 
-===============================================
-apt install gcc-multilib
-
-
-to inspect DBus services on the system
-======================================
-apt install d-feet
-
-
-to browse the Gtk3 icons
-========================
-sudo apt install gtk-3-examples
-# sudo apt install gtk3-icon-browser
-
-In order to open the icon browser, open a terminal and execute the command 'gtk3-icon-browser'.
-
-
-for the GTK Inspector
-=====================
-https://wiki.gnome.org/action/show/Projects/GTK/Inspector?action=show&redirect=Projects%2FGTK%2B%2FInspector
-apt install libgtk-3-dev
-
-
-additional git features
-=======================
-apt install gitk
-
-
-Für das kompilieren des Simulators (CrIa) wird folgendes noch benötigt:
-=======================================================================
-apt install apt install libdbus-1-dev
-
-
-install PyCharm
-===============
-download the .tar.gz
-unpack where you want it
-follow the instructions with the linux setup file (add to the PATH)
-
-for a Application Launcher: open Pycharm (terminal pycharm.sh) -> Tools -> Create Desktop Entry
-
-set the PYTHONPATH environment variable and add the PyCharm bin directory to PATH
-=================================================================================
-for Ubuntu 18.04.2 LTS (bionic) changes in the ~/.profile
-
-::
-
-    # ~/.profile: executed by the command interpreter for login shells.
-    # This file is not read by bash(1), if ~/.bash_profile or ~/.bash_login
-    # exists.
-    # see /usr/share/doc/bash/examples/startup-files for examples.
-
-    # the files are located in the bash-doc package.
-
-    # the default umask is set in /etc/profile; for setting the umask
-    # for ssh logins, install and configure the libpam-umask package.
-    #umask 022
-
-    # if running bash
-    if [ -n "$BASH_VERSION" ]; then
-        # include .bashrc if it exists
-        if [ -f "$HOME/.bashrc" ]; then
-        . "$HOME/.bashrc"
-        fi
-    fi
-
-    # set PATH so it includes user's private bin if it exists
-    if [ -d "$HOME/bin" ] ; then
-        PATH="$HOME/bin:$PATH"
-    fi
-
-    # set PATH so it includes user's private bin if it exists
-    if [ -d "$HOME/.local/bin" ] ; then
-        PATH="$HOME/.local/bin:$PATH"
-    fi
-
-    # add PyCharm directory
-    if [ -d "$HOME/.local/bin" ] ; then
-        PATH="$HOME/pycharm/bin:$PATH"
-    fi
-
-    # ------------------------------ PYTHONPATH -------------------------------------
-
-    # add CHEOPS CCS directory
-    # PYTHONPATH="$HOME/cheops/Ccs/esa:$PYTHONPATH"
-
-    # add SMILE CCS directory
-    PYTHONPATH="$HOME/smile/implementation/Ccs/devel:$PYTHONPATH"
-
-    # add SMILE TST directory
-    PYTHONPATH="$HOME/smile/implementation/Tst:$PYTHONPATH"
-    PYTHONPATH="$HOME/smile/implementation/Tst/tst:$PYTHONPATH"
-    PYTHONPATH="$HOME/smile/implementation/Tst/progress_view:$PYTHONPATH"
-    PYTHONPATH="$HOME/smile/implementation/Tst/sketch_desk:$PYTHONPATH"
-    PYTHONPATH="$HOME/smile/implementation/Tst/test_specs:$PYTHONPATH"
-    PYTHONPATH="$HOME/smile/implementation/Tst/tst/generator:$PYTHONPATH"
-    export PYTHONPATH
\ No newline at end of file

start_ccs.py → start_ccs

 #!/usr/bin/python3
 import sys
-import os
+# import os
 import confignator
 sys.path.append(confignator.get_option('paths', 'ccs'))
 sys.path.append(confignator.get_option('paths', 'tst'))