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Commit a069b45f authored by Michael Blaschek's avatar Michael Blaschek :bicyclist:
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wrf some fixes

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definition-files/ubuntu/Singularity.18.04.base
+ 7
− 80
View file @ a069b45f
Bootstrap: debootstrap
MirrorURL: http://at.archive.ubuntu.com/ubuntu
OSVersion: bionic
Bootstrap: docker
From: ubuntu:18.04
%labels
maintainer IT-IMGW <it.img-wien@univie.ac.at>
%environment
# Set operating system mirror URL
export MIRRORURL='http://at.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
#export LC_ALL='C'
export LANG=C.UTF-8
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
%post -c /bin/bash
# Set operating system mirror URL
export MIRRORURL='http://at.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
# export LC_ALL=C
export LANG=C.UTF-8
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
# Install system metapackages
apt-get -y install ubuntu-standard
apt-get -y install ubuntu-server
# Add repositories
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security restricted"
# Upgrade all software packages to their latest versions
apt-get -y update && apt-get -y upgrade
# Install common packages from 'main'
apt-get -y install autoconf
apt-get -y install automake
apt-get -y install build-essential
apt-get -y install cmake
apt-get -y install evince
apt-get -y install expect
apt-get -y install gfortran
apt-get -y install libtool
apt-get -y install mlocate
apt-get -y install pkg-config
apt-get -y install wget
apt-get -y install zip
# Cleanup
apt-get -y autoremove --purge
apt-get -y clean
%files
$PWD/definition-files/runscript /.singularity.d/runscript
$PWD/definition-files/run-help /.singularity.d/runscript.help
# Update database for mlocate
updatedb
%post
# command prompt name
CNAME=u18.04.base
CNAME=u18.base
# does not work goes into /.singularity.d/env/91-environment.sh
echo "export PS1=\"[IMGW-$CNAME]\w\$ \"" >> /.singularity.d/env/99-zz-custom-env.sh
# add some labels
......
definition-files/ubuntu/Singularity.18.04.base.bootstrap 0 → 100644
+ 96
− 0
View file @ a069b45f
Bootstrap: debootstrap
MirrorURL: http://at.archive.ubuntu.com/ubuntu
OSVersion: bionic
%labels
maintainer IT-IMGW <it.img-wien@univie.ac.at>
%environment
# Set operating system mirror URL
export MIRRORURL='http://at.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
#export LC_ALL='C'
export LANG=C.UTF-8
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
%post -c /bin/bash
# Set operating system mirror URL
export MIRRORURL='http://at.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
# export LC_ALL=C
export LANG=C.UTF-8
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
# Install system metapackages
apt-get -y install ubuntu-standard
apt-get -y install ubuntu-server
# Add repositories
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports restricted"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security main"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security universe"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security multiverse"
add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security restricted"
# Upgrade all software packages to their latest versions
apt-get -y update && apt-get -y upgrade
# Install common packages from 'main'
apt-get -y install autoconf
apt-get -y install automake
apt-get -y install build-essential
apt-get -y install cmake
apt-get -y install evince
apt-get -y install expect
apt-get -y install gfortran
apt-get -y install libtool
apt-get -y install mlocate
apt-get -y install pkg-config
apt-get -y install wget
apt-get -y install zip
# Cleanup
apt-get -y autoremove --purge
apt-get -y clean
# Update database for mlocate
updatedb
# command prompt name
CNAME=u18.04.base
# does not work goes into /.singularity.d/env/91-environment.sh
echo "export PS1=\"[IMGW-$CNAME]\w\$ \"" >> /.singularity.d/env/99-zz-custom-env.sh
# add some labels
echo "libc $(ldd --version | head -n1 | cut -d' ' -f4)" >> "$SINGULARITY_LABELS"
echo "linux $(cat /etc/os-release | grep PRETTY_NAME | cut -d'=' -f2)" >> "$SINGULARITY_LABELS"
%environment
export LANG=C.UTF-8
export LIBRARY=/usr/lib64:/lib64:/lib
export INCLUDE=/usr/include
\ No newline at end of file
development/spack.cs.yaml
+ 9
− 4
View file @ a069b45f
spack:
specs:
#- hdf5@1.10.7+mpi target=skylake
- openmpi@4.1.1 fabrics=ucx schedulers=slurm +legacylaunchers+thread_multiple+pmi target=skylake
- ucx@ +thread_multiple+pic+rc+dm+dc+ud+cma+mlx5-dv target=skylake
- openblas@0.3.18 target=skylake
- netcdf-fortran@4.5.2 target=skylake
- netcdf-c@4.7.4+parallel-netcdf target=skylake
- hdf5@1.12.1+mpi+fortran+hl+threadsafe+szip target=skylake
- openmpi@4.1.1+legacylaunchers+pmi fabrics=ucx schedulers=slurm target=skylake
- ucx@1.11.2 +thread_multiple+pic+rc+dm+dc+ud+cma target=skylake
container:
images:
# os: "ubuntu:18.04"
os: "centos:8"
spack: 0.19.0
......@@ -21,3 +23,6 @@ spack:
labels:
mpi: "openmpi@4.1.1"
netcdf: "4.7.4"
hdf5: "1.12.1"
ucx: "1.11.2+ud"
development/spack.yaml
+ 3
− 3
View file @ a069b45f
spack:
specs:
- hdf5@1.10.7+mpi target=skylake
- openmpi@3.1.6 target=skylake
- hdf5@1.10.7+mpi+fortran+hl target=skylake
- openmpi@3.1.6 fabrics=ucx target=skylake
container:
images:
......@@ -19,4 +19,4 @@ spack:
labels:
app: "hdf5@1.10.7+mpi"
mpi: "openmpi@3.1.6"
\ No newline at end of file
mpi: "openmpi@3.1.6"
models/WRF/Singularity.wrf
+ 3
− 1
View file @ a069b45f
......@@ -25,7 +25,9 @@ NETCDF=/usr/lib64/openmpi/
mkdir -vp /wrf/WRF /wrf/WPS \
&& cat /wrf/WRF.tar.gz | tar --no-same-owner --strip-components=1 -zxC /wrf/WRF \
&& cat /wrf/WPS.tar.gz | tar --no-same-owner --strip-components=1 -zxC /wrf/WPS
&& cat /wrf/WPS.tar.gz | tar --no-same-owner --strip-components=1 -zxC /wrf/WPS \
&& rm /wrf/WRF.tar.gz /wrf/WPS.tar.gz
# Build WRF with Option 34 and 1
# GCC with openmpi
......
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