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Commit 86b2a6ab authored by Marty Kandes's avatar Marty Kandes
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naked-singularity-v0.7.3 :: added centos.def and centos-openmpi.def for 

comet
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README
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......@@ -46,8 +46,8 @@ AUTHOR
VERSION
0.7.2
0.7.3
LAST UPDATED
Wednesday, May 15th, 2019
Thursday, May 16th, 2019
definition-files/comet/centos/centos-openmpi.def 0 → 100644
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− 0
View file @ 86b2a6ab
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7.6.1810/os/x86_64/
Include: yum
%labels
APPLICATION_NAME centos + openmpi
APPLICATION_VERSION 7.6.1810 + 1.8.4
APPLICATION_URL https://www.open-mpi.org/
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.6.1
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 8192
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
LAST_UPDATED 20190514
%setup
%environment
# Set system locale
export LC_ALL=C
# Set paths to OpenMPI binaries and libraries
export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
%post -c /bin/bash
# Set system locale
export LC_ALL=C
# Add repositories
yum -y install epel-release
# Install system metapackages
yum -y groupinstall "Development Tools"
yum -y groupinstall "Additional Development"
yum -y groupinstall "Compatibility Libraries"
# Upgrade all packages to their latest versions
yum -y update
# Install common packages
yum -y install bc
yum -y install cmake
yum -y install curl
yum -y install mlocate
yum -y install rsync
yum -y install time
yum -y install wget
yum -y install which
# Install expect to automate responses for interactive build questions
yum -y install expect
# Make filesystem mount points
mkdir /cvmfs /oasis /projects /scratch
# Use /tmp to store temporary files within the container during the
# bootstraping process
cd /tmp
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Install basic drivers for user space access to Ethernet, RDMA,
# and Infiniband. See https://community.mellanox.com/docs/DOC-2431
yum -y install dkms
yum -y install infiniband-diags
yum -y install infiniband-diags-devel
yum -y install libibverbs
yum -y install libibverbs-devel
yum -y install ibacm
yum -y install librdmacm
yum -y install librdmacm-devel
yum -y install libmlx4
yum -y install libmlx5
yum -y install msflint
yum -y install libibcm
yum -y install libibmad
yum -y install libibmad-devel
yum -y install libibumad
yum -y install libibumad-devel
yum -y install opensm
yum -y install srptools
# Install additional tools
yum -y install ibutils
yum -y install libibverbs-utils
yum -y install rdmacm-utils
yum -y install librdmacm-utils
yum -y install perftest
yum -y install numactl
# Install libnl
yum -y install libnl3
yum -y install libnl3-devel
# Install OpenMPI dependencies
yum -y install zlib
yum -y install zlib-devel
# Download, build, and install OpenMPI
wget https://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.4.tar.gz
tar -xzvf openmpi-1.8.4.tar.gz
cd openmpi-1.8.4
./configure --prefix=/opt/openmpi-1.8.4
make all install
# Set paths to OpenMPI binaries and libraries
export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
# Update database for mlocate
updatedb
%files
%runscript
%test
definition-files/comet/centos/centos.def 0 → 100644
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− 0
View file @ 86b2a6ab
Bootstrap: yum
OSVersion: 7
MirrorURL: http://mirror.centos.org/centos-7/7.6.1810/os/x86_64/
Include: yum
%labels
APPLICATION_NAME centos
APPLICATION_VERSION 7.6.1810
APPLICATION_URL https://www.centos.org
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.6.1
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 4096
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
LAST_UPDATED 20190513
%setup
%environment
# Set system locale
export LC_ALL=C
%post -c /bin/bash
# Set system locale
export LC_ALL=C
# Add repositories
yum -y install epel-release
# Install system metapackages
yum -y groupinstall "Development Tools"
yum -y groupinstall "Additional Development"
yum -y groupinstall "Compatibility Libraries"
# Upgrade all packages to their latest versions
yum -y update
# Install common packages
yum -y install bc
yum -y install cmake
yum -y install curl
yum -y install mlocate
yum -y install rsync
yum -y install time
yum -y install wget
yum -y install which
# Install expect to automate responses for interactive build questions
yum -y install expect
# Make filesystem mount points
mkdir /cvmfs /oasis /projects /scratch
# Use /tmp to store temporary files within the container during the
# bootstraping process
cd /tmp
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Update database for mlocate
updatedb
%files
%runscript
echo " "
echo " __________________ __ _______________ "
echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
echo " --/ / / / / / /|_/ / __/ / / "
echo " / /___/ /_/ / / / / /___ / / "
echo " \____/\____/_/ /_/_____/ /_/ "
echo " "
%test
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