Skip to content
Snippets Groups Projects
Commit 6af0536e authored by Marty Kandes's avatar Marty Kandes
Browse files

naked-singularity-v0.2.3 :: replaced expect-based install of miniconda2 

and miniconda3 with batch, non-interactive installation process for
ubuntu.def, ubuntu-cuda.def, ubuntu-openmpi.def, ubuntu-mvapich2.def,
ubuntu-cuda-openmpi.def, theano-cpu.def, and theano-gpu.def on comet
parent f409b67d
No related branches found
No related tags found
No related merge requests found
Show whitespace changes
Inline Side-by-side
Showing
with 22 additions and 322 deletions
README
+ 1
− 1
View file @ 6af0536e
......@@ -29,7 +29,7 @@ AUTHOR
VERSION
0.2.2
0.2.3
LAST UPDATED
......
definition-files/us/ucsd/sdsc/comet/tensorflow/tensorflow-gpu.def
+ 2
− 2
View file @ 6af0536e
......@@ -256,7 +256,7 @@ OSVersion: xenial
echo 'send "N\r"' >> install-tensorflow-python.exp
echo 'expect "Do you wish to build TensorFlow with VERBS support? \[y/N\]: "' >> install-tensorflow-python.exp
echo 'send "N\r"' >> install-tensorflow-python.exp
echo 'expect "Do you wish to build TensorFlow with OpenCL support? \[y/N\]: "' >> install-tensorflow-python.exp
echo 'expect "Do you wish to build TensorFlow with OpenCL SYCL support? \[y/N\]: "' >> install-tensorflow-python.exp
echo 'send "N\r"' >> install-tensorflow-python.exp
echo 'expect "Do you wish to build TensorFlow with CUDA support? \[y/N\]: "' >> install-tensorflow-python.exp
echo 'send "Y\r"' >> install-tensorflow-python.exp
......@@ -323,7 +323,7 @@ OSVersion: xenial
echo 'send "N\r"' >> install-tensorflow-python3.exp
echo 'expect "Do you wish to build TensorFlow with VERBS support? \[y/N\]: "' >> install-tensorflow-python3.exp
echo 'send "N\r"' >> install-tensorflow-python3.exp
echo 'expect "Do you wish to build TensorFlow with OpenCL support? \[y/N\]: "' >> install-tensorflow-python3.exp
echo 'expect "Do you wish to build TensorFlow with OpenCL SYCL support? \[y/N\]: "' >> install-tensorflow-python3.exp
echo 'send "N\r"' >> install-tensorflow-python3.exp
echo 'expect "Do you wish to build TensorFlow with CUDA support? \[y/N\]: "' >> install-tensorflow-python3.exp
echo 'send "Y\r"' >> install-tensorflow-python3.exp
......
definition-files/us/ucsd/sdsc/comet/theano/theano-cpu.def
+ 2
− 27
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180307
LAST_UPDATED 20180320
%setup
......@@ -73,32 +73,7 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Set path to miniconda2 binary
export PATH="/opt/miniconda2/bin:${PATH}"
......
definition-files/us/ucsd/sdsc/comet/theano/theano-gpu.def
+ 2
− 27
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180301
LAST_UPDATED 20180320
%setup
......@@ -73,32 +73,7 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Set path to miniconda2 binary
export PATH="/opt/miniconda2/bin:${PATH}"
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def
+ 3
− 53
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180316
LAST_UPDATED 20180320
%setup
......@@ -73,62 +73,12 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Location of NVIDIA repositories
declare -r NVIDIA_ROOT_URL='http://developer.download.nvidia.com/compute'
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def
+ 3
− 53
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180302
LAST_UPDATED 20180320
%setup
......@@ -73,62 +73,12 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Location of NVIDIA repositories
declare -r NVIDIA_ROOT_URL='http://developer.download.nvidia.com/compute'
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-mvapich2.def
+ 3
− 53
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180302
LAST_UPDATED 20180320
%setup
......@@ -73,62 +73,12 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Install basic drivers for user space access to Ethernet, RDMA,
# and Infiniband. See https://community.mellanox.com/docs/DOC-2431
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-openmpi.def
+ 3
− 53
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180302
LAST_UPDATED 20180320
%setup
......@@ -73,62 +73,12 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Install basic drivers for user space access to Ethernet, RDMA,
# and Infiniband. See https://community.mellanox.com/docs/DOC-2431
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def
+ 3
− 53
View file @ 6af0536e
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180302
LAST_UPDATED 20180320
%setup
......@@ -73,62 +73,12 @@ OSVersion: xenial
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
# Set container environment variables
cd /.singularity.d/env
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Please register or to comment