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Commit 645ef039 authored by Marty Kandes's avatar Marty Kandes
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Update Paraview definition files for Expanse

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Bootstrap: shub
From: mkandes/naked-singularity:ubuntu-18.04-openmpi-3.1.6
%labels
APPLICATION_NAME Paraview
APPLICATION_VERSION 5.8.1
APPLICATION_URL https://www.paraview.org
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
LAST_UPDATED 20210505
%setup
%environment
# Set LLVM version number, root and installation directories
export LLVM_REPO_URL='https://github.com/llvm/llvm-project.git'
export LLVM_VERSION='10.0.1'
export LLVM_ROOT_DIR='/opt/llvm'
export LLVM_INSTALL_DIR="${LLVM_ROOT_DIR}/${LLVM_VERSION}"
# Set paths to LLVM binaries and libraries
export PATH="${LLVM_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${LLVM_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
# Set OSMESA version number, root and installation directories
export OSMESA_ROOT_URL='https://archive.mesa3d.org'
export OSMESA_VERSION='20.1.5'
export OSMESA_ROOT_DIR='/opt/osmesa'
export OSMESA_INSTALL_DIR="${OSMESA_ROOT_DIR}/${OSMESA_VERSION}"
# Set path to OSMESA library
export LD_LIBRARY_PATH="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu:${LD_LIBRARY_PATH}"
# Set git-lfs version number, root and installation directories
export GIT_LFS_VERSION='2.11.0'
export GIT_LFS_ROOT_DIR='/opt/git-lfs'
export GIT_LFS_INSTALL_DIR="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
# Set path to git-lfs binary
export PATH="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}/bin:${PATH}"
# Set Paraview version number, root and installation directories
export PARAVIEW_VERSION='5.8.1'
export PARAVIEW_ROOT_DIR='/opt/paraview'
export PARAVIEW_INSTALL_DIR="${PARAVIEW_ROOT_DIR}/${PARAVIEW_VERSION}"
# Set paths to Paraview binaries, libraries, and supporting python packages
export PATH="${PARAVIEW_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${PARAVIEW_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
export PYTHONPATH="${PARAVIEW_INSTALL_DIR}/lib:${PARAVIEW_INSTALL_DIR}/lib/python3.6/site-packages:${PYTHONPATH}"
%post -c /bin/bash
# Set operating system mirror URL
export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
export LC_ALL='C'
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
# Set Mellanox OFED version, operating system, and hardware platform
export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
export MLNX_OFED_VERSION='4.7-3.2.9.0'
export MLNX_OS_VERSION='ubuntu18.04'
export MLNX_PLATFORM='x86_64'
# Set OpenMPI major, minor, and revision numbers, root and
# installation directories
export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
export OMPI_MAJOR='3'
export OMPI_MINOR='1'
export OMPI_REVISION='6'
export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
export OMPI_ROOT_DIR='/opt/openmpi'
export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
# Set paths to OpenMPI binaries and libraries
export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
# Upgrade all software packages to their latest versions
apt-get -y update && apt-get -y upgrade
cd /tmp
# Install dependencies and prerequisites for meson
apt-get -y install python3
apt-get -y install python3-dev
apt-get -y install python3-pip
apt-get -y install python3-setuptools
apt-get -y install python3-wheel
apt-get -y install ninja-build
# Install meson
pip3 install meson
# Install dependencies and prerequisites for OSMesa
apt-get -y install bison
apt-get -y install clang
apt-get -y install cmake
apt-get -y install flex
apt-get -y install gcc
apt-get -y install python3-mako
# Set LLVM version number, root and installation directories
export LLVM_REPO_URL='https://github.com/llvm/llvm-project.git'
export LLVM_VERSION='10.0.1'
export LLVM_ROOT_DIR='/opt/llvm'
export LLVM_INSTALL_DIR="${LLVM_ROOT_DIR}/${LLVM_VERSION}"
# Download, build, and install a newer version of Clang/LLVM
git clone "${LLVM_REPO_URL}"
cd llvm-project
git checkout "llvmorg-${LLVM_VERSION}"
mkdir build
cd build
cmake -GNinja \
-DCMAKE_BUILD_TYPE='Release' \
-DCMAKE_INSTALL_PREFIX="${LLVM_INSTALL_DIR}" \
-DLLVM_ENABLE_PROJECTS='clang;libcxx;libcxxabi' \
-DBUILD_SHARED_LIBS='ON' \
-DLLVM_BUILD_LLVM_DYLIB='ON' \
-DLLVM_ENABLE_RTTI='ON' \
-DLLVM_INSTALL_UTILS='ON' \
-DLLVM_TARGETS_TO_BUILD='X86' \
../llvm
ninja
ninja install
# Set paths to LLVM binaries and libraries
export PATH="${LLVM_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${LLVM_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
cd /tmp
# Remove LLVM build directory
rm -rf llvm-project
# Set OSMESA version number, root and installation directories
export OSMESA_ROOT_URL='https://archive.mesa3d.org'
export OSMESA_VERSION='20.1.5'
export OSMESA_ROOT_DIR='/opt/osmesa'
export OSMESA_INSTALL_DIR="${OSMESA_ROOT_DIR}/${OSMESA_VERSION}"
# Download, build, and install OSMesa
wget "${OSMESA_ROOT_URL}/mesa-${OSMESA_VERSION}.tar.xz"
tar -xf "mesa-${OSMESA_VERSION}.tar.xz"
cd "mesa-${OSMESA_VERSION}"
mkdir build
meson --buildtype=release \
-Dprefix="${OSMESA_INSTALL_DIR}" \
-Dopengl='true' \
-Dgles1='false' \
-Dgles2='false' \
-Dgallium-omx='disabled' \
-Dgallium-va='false' \
-Dgallium-xa='false' \
-Dgallium-xvmc='false' \
-Dgallium-vdpau='false' \
-Dshared-glapi='true' \
-Dllvm='true' \
-Dshared-llvm='true' \
-Dosmesa='gallium' \
-Dgallium-drivers='swrast,swr' \
-Ddri3='false' \
-Ddri-drivers=[] \
-Degl='false' \
-Dplatforms=[] \
-Dgbm='false' \
-Dglx='disabled' \
-Dvulkan-drivers=[] \
-Dshader-cache='auto' \
build
ninja -C build
meson install -C build
# Set path to OSMESA library
export LD_LIBRARY_PATH="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu:${LD_LIBRARY_PATH}"
cd /tmp
# Remove OSMESA build directory and source tarball
rm -rf "mesa-${OSMESA_VERSION}"
rm "mesa-${OSMESA_VERSION}.tar.xz"
# Install dependencies and prerequisites required for Paraview
apt-get -y install cmake
apt-get -y install ffmpeg
apt-get -y install python3-dev
apt-get -y install python3-numpy
apt-get -y install python3-matplotlib
apt-get -y install python3-scipy
apt-get -y install libtbb-dev
# Set git-lfs version number, root and installation directories
export GIT_LFS_ROOT_URL='https://github.com/git-lfs/git-lfs/releases/download'
export GIT_LFS_VERSION='2.11.0'
export GIT_LFS_ROOT_DIR='/opt/git-lfs'
export GIT_LFS_INSTALL_DIR="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
# Download and install git-lfs, which is a prerequiste for VTK-m
mkdir -p "${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
cd "${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
wget "${GIT_LFS_ROOT_URL}/v${GIT_LFS_VERSION}/git-lfs-linux-amd64-v${GIT_LFS_VERSION}.tar.gz"
tar -xf "git-lfs-linux-amd64-v${GIT_LFS_VERSION}.tar.gz"
./install.sh
# Set path to git-lfs binary
export PATH="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}/bin:${PATH}"
cd /tmp
# Set Paraview version number, root and installation directories
export PARAVIEW_REPO_URL='https://gitlab.kitware.com/paraview/paraview.git'
export PARAVIEW_VERSION='5.8.1'
export PARAVIEW_ROOT_DIR='/opt/paraview'
export PARAVIEW_INSTALL_DIR="${PARAVIEW_ROOT_DIR}/${PARAVIEW_VERSION}"
# Download, build, and install Paraview
git clone "${PARAVIEW_REPO_URL}"
cd paraview
git checkout "v${PARAVIEW_VERSION}"
git submodule update --init --recursive
cd ../
mkdir build
cd build
cmake -GNinja \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX="${PARAVIEW_INSTALL_DIR}" \
-DPARAVIEW_BUILD_EDITION='CANONICAL' \
-DPARAVIEW_BUILD_SHARED_LIBS=ON \
-DPARAVIEW_USE_PYTHON=ON \
-DPARAVIEW_USE_MPI=ON \
-DPARAVIEW_USE_QT=OFF \
-DVTK_USE_X=OFF \
-DVTK_OPENGL_HAS_OSMESA=ON \
-DOSMESA_INCLUDE_DIR="${OSMESA_INSTALL_DIR}/include" \
-DOSMESA_LIBRARY="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu/libOSMesa.so" \
-DVTK_DEFAULT_RENDER_WINDOW_OFFSCREEN=ON \
-DVTK_OPENGL_USE_GLES=OFF \
-DVTK_OPENGL_HAS_EGL=OFF \
-DVTK_SMP_IMPLEMENTATION_TYPE=TBB \
../paraview
ninja
ninja install
# Set paths to Paraview binaries, libraries, and supporting python packages
export PATH="${PARAVIEW_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${PARAVIEW_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
export PYTHONPATH="${PARAVIEW_INSTALL_DIR}/lib:${PARAVIEW_INSTALL_DIR}/lib/python3.6/site-packages:${PYTHONPATH}"
cd /tmp
# Remove Paraview build and source directories
rm -rf build
rm -rf paraview
# Cleanup
apt-get -y autoremove --purge
apt-get -y clean
# Update database for mlocate
updatedb
%files
%runscript
%test
Bootstrap: shub
From: mkandes/naked-singularity:ubuntu-18.04-openmpi-3.1.6
%labels
APPLICATION_NAME Paraview
APPLICATION_VERSION 5.9.0
APPLICATION_URL https://www.paraview.org
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
LAST_UPDATED 20210506
%setup
%environment
# Set CMake version number, root and install directories, and repo URL
export CMAKE_VERSION='3.15.3'
export CMAKE_ROOT_DIR='/opt/cmake'
export CMAKE_INSTALL_DIR="${CMAKE_ROOT_DIR}/${CMAKE_VERSION}"
# Set paths to CMake binaries
export PATH="${CMAKE_INSTALL_DIR}/bin:${PATH}"
# Set LLVM version number, root and install directories
export LLVM_VERSION='11.1.0'
export LLVM_ROOT_DIR='/opt/llvm'
export LLVM_INSTALL_DIR="${LLVM_ROOT_DIR}/${LLVM_VERSION}"
# Set paths to LLVM binaries and libraries
export PATH="${LLVM_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${LLVM_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
# Set OSMESA version number, root and install directories
export OSMESA_VERSION='20.1.5'
export OSMESA_ROOT_DIR='/opt/osmesa'
export OSMESA_INSTALL_DIR="${OSMESA_ROOT_DIR}/${OSMESA_VERSION}"
# Set path to OSMESA library
export LD_LIBRARY_PATH="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu:${LD_LIBRARY_PATH}"
# Set git-lfs version number, root and install directories
export GIT_LFS_VERSION='2.13.3'
export GIT_LFS_ROOT_DIR='/opt/git-lfs'
export GIT_LFS_INSTALL_DIR="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
# Set path to git-lfs binary
export PATH="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}/bin:${PATH}"
# Set Paraview version number, root and install directories
export PARAVIEW_VERSION='5.9.0'
export PARAVIEW_ROOT_DIR='/opt/paraview'
export PARAVIEW_INSTALL_DIR="${PARAVIEW_ROOT_DIR}/${PARAVIEW_VERSION}"
# Set paths to Paraview binaries, libraries, and supporting python packages
export PATH="${PARAVIEW_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${PARAVIEW_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
export PYTHONPATH="${PARAVIEW_INSTALL_DIR}/lib:${PARAVIEW_INSTALL_DIR}/lib/python3.6/site-packages:${PYTHONPATH}"
%post -c /bin/bash
# Set operating system mirror URL
export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
# Set operating system version
export OSVERSION='bionic'
# Set system locale
export LC_ALL='C'
# Set debian frontend interface
export DEBIAN_FRONTEND='noninteractive'
# Set Mellanox OFED version, operating system, and hardware platform
export MLNX_OFED_VERSION='4.7-3.2.9.0'
export MLNX_OS_VERSION='ubuntu18.04'
export MLNX_PLATFORM='x86_64'
export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
# Set OpenMPI major, minor, and revision numbers, root and
# install directories, and root URL
export OMPI_MAJOR='3'
export OMPI_MINOR='1'
export OMPI_REVISION='6'
export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
export OMPI_ROOT_DIR='/opt/openmpi'
export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
# Set paths to OpenMPI binaries and libraries
export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
# Upgrade all software packages to their latest versions
apt-get -y update && apt-get -y upgrade
cd /tmp
# Install dependencies and prerequisites for meson
apt-get -y install python3
apt-get -y install python3-dev
apt-get -y install python3-pip
apt-get -y install python3-setuptools
apt-get -y install python3-wheel
apt-get -y install ninja-build
# Install meson
pip3 install meson
# Install dependencies and prerequisites for OSMesa
apt-get -y install bison
apt-get -y install clang
apt-get -y install cmake
apt-get -y install flex
apt-get -y install gcc
apt-get -y install python3-mako
# Set CMake version number, root and install directories, and repo URL
export CMAKE_VERSION='3.15.3'
export CMAKE_ROOT_DIR='/opt/cmake'
export CMAKE_INSTALL_DIR="${CMAKE_ROOT_DIR}/${CMAKE_VERSION}"
export CMAKE_REPO_URL='https://github.com/Kitware/CMake.git'
git clone "${CMAKE_REPO_URL}"
cd CMake
git checkout "v${CMAKE_VERSION}"
./bootstrap --prefix="${CMAKE_INSTALL_DIR}"
make
make install
# Set paths to CMake binaries
export PATH="${CMAKE_INSTALL_DIR}/bin:${PATH}"
cd /tmp
# Set LLVM version number, root and install directories, and repo URL
export LLVM_VERSION='11.1.0'
export LLVM_ROOT_DIR='/opt/llvm'
export LLVM_INSTALL_DIR="${LLVM_ROOT_DIR}/${LLVM_VERSION}"
export LLVM_REPO_URL='https://github.com/llvm/llvm-project.git'
# Download, build, and install a newer version of Clang/LLVM
git clone "${LLVM_REPO_URL}"
cd llvm-project
git checkout "llvmorg-${LLVM_VERSION}"
mkdir build
cd build
cmake -GNinja \
-DCMAKE_BUILD_TYPE='Release' \
-DCMAKE_INSTALL_PREFIX="${LLVM_INSTALL_DIR}" \
-DLLVM_ENABLE_PROJECTS='clang;libcxx;libcxxabi' \
-DBUILD_SHARED_LIBS='ON' \
-DLLVM_BUILD_LLVM_DYLIB='ON' \
-DLLVM_ENABLE_RTTI='ON' \
-DLLVM_INSTALL_UTILS='ON' \
-DLLVM_TARGETS_TO_BUILD='X86' \
../llvm
ninja
ninja install
# Set paths to LLVM binaries and libraries
export PATH="${LLVM_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${LLVM_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
cd /tmp
# Remove LLVM build directory
rm -rf llvm-project
# Set OSMESA version number, root and install directories, and root URL
export OSMESA_VERSION='20.1.5'
export OSMESA_ROOT_DIR='/opt/osmesa'
export OSMESA_INSTALL_DIR="${OSMESA_ROOT_DIR}/${OSMESA_VERSION}"
export OSMESA_ROOT_URL='https://archive.mesa3d.org'
# Download, build, and install OSMesa
wget "${OSMESA_ROOT_URL}/mesa-${OSMESA_VERSION}.tar.xz"
tar -xf "mesa-${OSMESA_VERSION}.tar.xz"
cd "mesa-${OSMESA_VERSION}"
mkdir build
meson --buildtype=release \
-Dprefix="${OSMESA_INSTALL_DIR}" \
-Dopengl='true' \
-Dgles1='false' \
-Dgles2='false' \
-Dgallium-omx='disabled' \
-Dgallium-va='false' \
-Dgallium-xa='false' \
-Dgallium-xvmc='false' \
-Dgallium-vdpau='false' \
-Dshared-glapi='true' \
-Dllvm='true' \
-Dshared-llvm='true' \
-Dosmesa='gallium' \
-Dgallium-drivers='swrast,swr' \
-Ddri3='false' \
-Ddri-drivers=[] \
-Degl='false' \
-Dplatforms=[] \
-Dgbm='false' \
-Dglx='disabled' \
-Dvulkan-drivers=[] \
-Dshader-cache='auto' \
build
ninja -C build
meson install -C build
# Set path to OSMESA library
export LD_LIBRARY_PATH="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu:${LD_LIBRARY_PATH}"
cd /tmp
# Remove OSMESA build directory and source tarball
rm -rf "mesa-${OSMESA_VERSION}"
rm "mesa-${OSMESA_VERSION}.tar.xz"
# Install dependencies and prerequisites required for Paraview
apt-get -y install cmake
apt-get -y install ffmpeg
apt-get -y install python3-dev
apt-get -y install python3-numpy
apt-get -y install python3-matplotlib
apt-get -y install python3-scipy
apt-get -y install libtbb-dev
# Set git-lfs version number, root and install directories, and root URL
export GIT_LFS_VERSION='2.13.3'
export GIT_LFS_ROOT_DIR='/opt/git-lfs'
export GIT_LFS_INSTALL_DIR="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
export GIT_LFS_ROOT_URL='https://github.com/git-lfs/git-lfs/releases/download'
# Download and install git-lfs, which is a prerequiste for VTK-m
mkdir -p "${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
cd "${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}"
wget "${GIT_LFS_ROOT_URL}/v${GIT_LFS_VERSION}/git-lfs-linux-amd64-v${GIT_LFS_VERSION}.tar.gz"
tar -xf "git-lfs-linux-amd64-v${GIT_LFS_VERSION}.tar.gz"
./install.sh
# Set path to git-lfs binary
export PATH="${GIT_LFS_ROOT_DIR}/${GIT_LFS_VERSION}/bin:${PATH}"
cd /tmp
# Set Paraview version number, root and install directories, and repo URL
export PARAVIEW_VERSION='5.9.0'
export PARAVIEW_ROOT_DIR='/opt/paraview'
export PARAVIEW_INSTALL_DIR="${PARAVIEW_ROOT_DIR}/${PARAVIEW_VERSION}"
export PARAVIEW_REPO_URL='https://gitlab.kitware.com/paraview/paraview.git'
# Download, build, and install Paraview
git clone "${PARAVIEW_REPO_URL}"
cd paraview
git checkout "v${PARAVIEW_VERSION}"
git submodule update --init --recursive
cd ../
mkdir build
cd build
cmake -GNinja \
-DCMAKE_BUILD_TYPE=Release \
-DCMAKE_INSTALL_PREFIX="${PARAVIEW_INSTALL_DIR}" \
-DPARAVIEW_BUILD_EDITION='CANONICAL' \
-DPARAVIEW_BUILD_SHARED_LIBS=ON \
-DPARAVIEW_USE_PYTHON=ON \
-DPARAVIEW_USE_MPI=ON \
-DPARAVIEW_USE_QT=OFF \
-DVTK_USE_X=OFF \
-DVTK_OPENGL_HAS_OSMESA=ON \
-DOSMESA_INCLUDE_DIR="${OSMESA_INSTALL_DIR}/include" \
-DOSMESA_LIBRARY="${OSMESA_INSTALL_DIR}/lib/x86_64-linux-gnu/libOSMesa.so" \
-DVTK_DEFAULT_RENDER_WINDOW_OFFSCREEN=ON \
-DVTK_OPENGL_USE_GLES=OFF \
-DVTK_OPENGL_HAS_EGL=OFF \
-DVTK_SMP_IMPLEMENTATION_TYPE=TBB \
../paraview
ninja
ninja install
# Set paths to Paraview binaries, libraries, and supporting python packages
export PATH="${PARAVIEW_INSTALL_DIR}/bin:${PATH}"
export LD_LIBRARY_PATH="${PARAVIEW_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
export PYTHONPATH="${PARAVIEW_INSTALL_DIR}/lib:${PARAVIEW_INSTALL_DIR}/lib/python3.6/site-packages:${PYTHONPATH}"
cd /tmp
# Remove Paraview build and source directories
rm -rf build
rm -rf paraview
# Cleanup
apt-get -y autoremove --purge
apt-get -y clean
# Update database for mlocate
updatedb
%files
%runscript
%test
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