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Commit 501cdfdb authored by Marty Kandes's avatar Marty Kandes
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naked-singularity-v0.1.3 :: updated ubuntu.def and ubuntu-cuda.def to 

install miniconda2&3 by default via expect
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README
+ 2
− 2
View file @ 501cdfdb
......@@ -29,8 +29,8 @@ AUTHOR
VERSION
0.1.2
0.1.3
LAST UPDATED
Wednesday, February 14th, 2018
Tuesday, February 27th, 2018
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def
+ 82
− 5
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......@@ -9,11 +9,10 @@ OSVersion: xenial
APPLICATION_NAME cuda
APPLICATION_VERSION 8.0.44
APPLICATION_URL https://developer.nvidia.com/cuda-zone
DEVICE_DRIVER_VERSION 367.48
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180214
LAST_UPDATED 20180226
%setup
......@@ -57,9 +56,89 @@ OSVersion: xenial
apt-get -y install gfortran
apt-get -y install zip
# Install expect to automate responses for interactive build questions
apt-get -y install expect
# Make filesystem mount points
mkdir /cvmfs /oasis /projects /scratch
# Build and install additional software packages in /opt
cd /opt
# Install Miniconda -- a free minimal installer for conda
#
# Miniconda is a small, bootstrap version of Anaconda that includes
# only conda, Python, the packages they depend on and a small number
# of other useful packages, including pip, zlib and a few others.
# Use the 'conda install' command to install more than 720
# additional conda packages from the Anaconda repository.
#
# https://conda.io/docs/index.html
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
rm Miniconda2-latest-Linux-x86_64.sh
rm install-miniconda2.exp
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
rm Miniconda3-latest-Linux-x86_64.sh
rm install-miniconda3.exp
# Location of NVIDIA repositories
declare -r NVIDIA_ROOT_URL='http://developer.download.nvidia.com/compute'
declare -r CUDA_REPO_URL="${NVIDIA_ROOT_URL}/cuda/repos/ubuntu1604/x86_64"
......@@ -97,8 +176,6 @@ OSVersion: xenial
apt-get -y install libglu1-mesa-dev
apt-get -y install default-jre
cd /opt
# Download NVIDIA drivers, libraries, and packages
wget --wait=10 "${CUDA_REPO_URL}/nvidia-367_367.48-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-367-dev_367.48-0ubuntu1_amd64.deb"
......
definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def
+ 71
− 2
View file @ 501cdfdb
......@@ -12,7 +12,7 @@ OSVersion: xenial
SYSTEM_NAME comet
SYSTEM_SINGULARITY_VERSION 2.3.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
LAST_UPDATED 20180213
LAST_UPDATED 20180226
%setup
......@@ -56,12 +56,81 @@ OSVersion: xenial
apt-get -y install gfortran
apt-get -y install zip
# Install expect to automate responses for interactive build questions
apt-get -y install expect
# Make filesystem mount points
mkdir /cvmfs /oasis /projects /scratch
# Build and install from souce in /opt
# Build and install additional software packages in /opt
cd /opt
# Install miniconda2
wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
chmod +x Miniconda2-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda2.exp
echo 'spawn ./Miniconda2-latest-Linux-x86_64.sh' >> install-miniconda2.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda2.exp
echo '>>> "' >> install-miniconda2.exp
echo 'send "\r "' >> install-miniconda2.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "yes\r"' >> install-miniconda2.exp
echo 'expect "Miniconda2 will now be installed into this location:\r' >> install-miniconda2.exp
echo '/root/miniconda2\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda2.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda2.exp
echo ' - Or specify a different location below\r' >> install-miniconda2.exp
echo '\r' >> install-miniconda2.exp
echo '\[/root/miniconda2\] >>> "' >> install-miniconda2.exp
echo 'send "/opt/miniconda2\r"' >> install-miniconda2.exp
echo 'expect "Do you wish the installer to prepend the Miniconda2 install location\r' >> install-miniconda2.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda2.exp
echo '\[no\] >>> "' >> install-miniconda2.exp
echo 'send "no\r"' >> install-miniconda2.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda2.exp
chmod +x install-miniconda2.exp
./install-miniconda2.exp
rm Miniconda2-latest-Linux-x86_64.sh
rm install-miniconda2.exp
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
echo '#!/usr/bin/expect -f' > install-miniconda3.exp
echo 'spawn ./Miniconda3-latest-Linux-x86_64.sh' >> install-miniconda3.exp
echo 'expect "Please, press ENTER to continue\r' >> install-miniconda3.exp
echo '>>> "' >> install-miniconda3.exp
echo 'send "\r "' >> install-miniconda3.exp
echo 'expect "Do you accept the license terms? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "yes\r"' >> install-miniconda3.exp
echo 'expect "Miniconda3 will now be installed into this location:\r' >> install-miniconda3.exp
echo '/root/miniconda3\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo ' - Press ENTER to confirm the location\r' >> install-miniconda3.exp
echo ' - Press CTRL-C to abort the installation\r' >> install-miniconda3.exp
echo ' - Or specify a different location below\r' >> install-miniconda3.exp
echo '\r' >> install-miniconda3.exp
echo '\[/root/miniconda3\] >>> "' >> install-miniconda3.exp
echo 'send "/opt/miniconda3\r"' >> install-miniconda3.exp
echo 'expect "Do you wish the installer to prepend the Miniconda3 install location\r' >> install-miniconda3.exp
echo 'to PATH in your /root/.bashrc ? \[yes|no\]\r' >> install-miniconda3.exp
echo '\[no\] >>> "' >> install-miniconda3.exp
echo 'send "no\r"' >> install-miniconda3.exp
echo 'expect "Thank you for installing Miniconda2!\r"' >> install-miniconda3.exp
chmod +x install-miniconda3.exp
./install-miniconda3.exp
rm Miniconda3-latest-Linux-x86_64.sh
rm install-miniconda3.exp
# Update database for mlocate
updatedb
......
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