fixed a few VSC-5 things

VSC.md

@@ -67,6 +67,21 @@ $ sqos
 the HOME and DATA partition are the same as on [VSC-4](#storage-on-vsc-4).
 
 
+![JET and VSC-5 holding hands](./mkdocs/img/jet_and_vsc5.png)
+
+since Fall 2023 there has been a major update. JET and VSC-5 are holding hands now. Your files on JET are now accessible from VSC-5. e.g.
+
+```txt title="JET and VSC-5"
+a directory on JET
+/jetfs/home/[username]
+
+can be found on VSC-5
+/gpfs/jetfs/home/[username]
+
+```
+
+You can use these directories as well for direct writing. The performance is higher on VSC-5 storage. This does not work on VSC-4.
+
 ## Node Information VSC-4
 
 ```txt title='VSC-4 Compute Node'
@@ -115,6 +130,7 @@ home       FILESET      62.17G       100G       100G     207.8M     none |   631
 
 ## Other Storage
 We have access to the Earth Observation Data Center [EODC](https://eodc.eu/data/), where one can find primarily the following data sets:
+
 - Sentinel-1, 2, 3
 - Wegener Center GPS RO
 
@@ -172,9 +188,10 @@ $ sacctmgr show qos  format=name%20s,priority,grpnodes,maxwall,description%40s
 
 SLURM allows for setting a run time limit below the default QOS's run time limit. After the specified time is elapsed, the job is killed:
 
-```bash
+```bash title="slurm time limit"
 #SBATCH --time=<time> 
 ```
+
 Acceptable time formats include `minutes`, `minutes:seconds`, `hours:minutes:seconds`, `days-hours`, `days-hours:minutes` and `days-hours:minutes:seconds`.
 
 
@@ -194,7 +211,7 @@ The core hours will be charged to the specified account. If not specified, the d
 
 Put this in the Job file (e.g. VSC-5 Nodes)
 
-```bash
+```bash title="VSC slurm example job"
 #!/bin/bash
 #
 #SBATCH -J TEST_JOB
@@ -224,7 +241,7 @@ Put this in the Job file (e.g. VSC-5 Nodes)
   * **--mail-type** sends an email at specific events. The SLURM doku lists the following valid mail-type values: *"BEGIN, END, FAIL, REQUEUE, ALL (equivalent to BEGIN, END, FAIL and REQUEUE), TIME_LIMIT, TIME_LIMIT_90 (reached 90 percent of time limit), TIME_LIMIT_80 (reached 80 percent of time limit), and TIME_LIMIT_50 (reached 50 percent of time limit). Multiple type values may be specified in a comma separated list."* [cited from the SLURM doku](http://slurm.schedmd.com)
   * **--mail-user** sends an email to this address
 
-```bash
+```bash title="slurm basic commands"
 sbatch check.slrm    # to submit the job
 squeue -u `whoami`   # to check the status  of own jobs
 scancel  JOBID       # for premature removal, where JOBID
@@ -238,7 +255,7 @@ The VSC use the same software system as Jet and have environmental modules avail
 - [VSC Wiki Software](https://wiki.vsc.ac.at/doku.php?id=doku:software)
 - VSC-4 has `miniconda3` modules for GNU and INTEL ;)
 
-```bash
+```bash title="VSC modules"
 module avail        # lists the **available** Application-Software,
                       # Compilers, Parallel-Environment, and Libraries
 module list         # shows currently loaded package of your session
@@ -252,13 +269,17 @@ will load the intel compiler suite and add variables to your environment.
 on how to use environment modules go to [Using Environment Modules](Misc/Environment-Modules.md)
 
 ### Import user-site packages
+
 It is possible to install user site packages into your `.local/lib/python3.*` directory:
-```bash
+
+```bash title="installing python packages in your HOME"
 # installing a user site package
-/gpfs/data/fs71386/imgw/run.sh pip install --user [package]
+pip install --user [package]
 ```
 
-```python
+**Please remember that all HOME and DATA quotas will be shared** Installing a lot of packages creates a lot of files! 
+
+```python title="Python importing user site packages"
 import sys, site
 sys.path.append(site.site.getusersitepackages())
 # This will add the correct path.