Update SRVX1.md, Jet-Cluster.md files

385da649 · Michael Blaschek · e32ccff3 · 385da649 · 385da649
Commit 385da649 authored 4 years ago by Michael Blaschek
--- a/Jet-Cluster.md
+++ b/Jet-Cluster.md
@@ -3,11 +3,15 @@

 [[_TOC_]]

-## Getting Started
+# Getting Started

 Welcome to the HPC @IMG @UNIVIE and please follow these steps to become a productive member of our department and make good use of the computer resources. Efficiency is keen.
+1. Connect to Jet
+2. Load environment (libraries, compilers, interpreter, tools)
+3. Checkout Code, Program, Compile, Test
+4. Submit to compute Nodes

-### SSH
+## SSH
 - [x] Terminal, Putty, ...
 - [x] Network access @UNIVIE

@@ -17,7 +21,7 @@ ssh [user]@jet01.img.univie.ac.at
 ```
 Please replace `[user]` with the username given by the [sysadmin](mailto:michael.blaschek@univie.ac.at) and supply your password when asked for. This should give you access to the login node. If you are outside of the university network, then please goto [VPN](#VPN) below.

-### VPN
+## VPN
 - [x] `u:account`

 The jet cluster is only accessible from within the virtual network of the university of Vienna. Therefore access from outside has to be granted via the [VPN-Service](https://vpn.univie.ac.at). Go there and login with your `u:account` and download the *Big-IP Edge* client for you system. 
@@ -39,12 +43,12 @@ f5fpc -s -t vpn.univie.ac.at -u [user]
 ```
 The status can be checked with `f5fpc --info`.

-### VNC
+## VNC
 The login nodes (`jet01` and `jet02`) allow to run a `VNC`-Server 

 :construction:

-### Jupyterhub
+## Jupyterhub
 <img src="https://jupyter.org/assets/hublogo.svg" width="300px">

 The Jet-cluster serves a [jupyterhub](https://jupyterhub.readthedocs.io/en/stable/) with a [jupyterlab](https://jupyterlab.readthedocs.io/en/stable/) that launches on the jet-cluster compute nodes and allows users to work directly on the cluster as well as submit jobs.
@@ -52,20 +56,22 @@ The Jet-cluster serves a [jupyterhub](https://jupyterhub.readthedocs.io/en/stabl
 Goto: [](https://jet01.img.univie.ac.at) from within the VPN or UNI-Network.
 Login with your jet-Credentials, choose a job and the jupyterlab will be launched.

-![Login](Documentation/jet-login.png)
-![Job](Documentation/jet-job1.png)
-![Jobs](Documentation/jet-job2.png)
+<img src="Documentation/jet-login.png" width="500px">
+
+<img src="Documentation/jet-job1.png" width="500px">
+
+<img src="Documentation/jet-job2.png" width="500px">

 :construction:


-### User Quotas and Restrictions
+## User Quotas and Restrictions

 Memory limit / slurm requests

 :construction:

-#### Network drives
+### Network drives
 Currently there are two network drives mounted on the jet cluster. These are connected to the [SRVX8](SRVX8.md) and data can be transfered or accessed like this on the jet cluster. Be aware that the data needs to be transfered via the network before and latencies are higher.
 ```
 131.130.157.8:/raid61        400T  378T   22T  95% /raid61
@@ -73,7 +79,7 @@ Currently there are two network drives mounted on the jet cluster. These are con
 jetfs                        1.1P   81T  975T   8% /jetfs
 ```

-## System Information
+# System Information
 Last Update: 4.12.2020
 Node Setup
 - 2x Login Nodes
@@ -82,7 +88,7 @@ Node Setup
 ![GPFS](Documentation/GPFS-jet.png)


-### Node Information
+## Node Information

 | Name | Value |
 | --- | --- |
@@ -99,7 +105,7 @@ Node Setup

 Global file system (GPFS) is present on all nodes with about 1 PB (~1000 TB) of storage.

-## Software
+# Software

 The typcial installation of a intel-cluster has the INTEL Compiler suite (`intel-parallel-studio`) and the open source GNU Compilers installed. Based on these two different compilers (`intel`, `gnu`), there are usually two version of each scientific software.
 Major Libraries:
@@ -115,7 +121,7 @@ These software libraries are usually handled by environment modules.

 <img src="http://modules.sourceforge.net/modules_red.svg" width="300px">

-### Currently installed modules
+## Currently installed modules
 ```bash
 >>> module av
 ---------------------------------- /jetfs/spack/share/spack/modules/linux-rhel8-skylake_avx512 -----------------------------------
@@ -152,7 +158,7 @@ Currently Loaded Modulefiles:
 ```
 `module list` shows the currently loaded modules and reports that 6 libraries need to be loaded as dependencies for `ECCODES`. Thus, it is not necessary to load the other libraries manually as they are dependencies of `ECCODES`.

-## Best Practice
+# Best Practice

 1. Example on jet
 2. Example job

--- a/SRVX1.md
+++ b/SRVX1.md
@@ -6,10 +6,53 @@
 ## Getting Started

 ### SSH
+- [x] Terminal, Putty, ...
+- [x] Network access @UNIVIE
+
+Use a terminal or [Putty](https://www.putty.org/) to connect with SSH to the server
+```bash
+ssh [user]@srvx1.img.univie.ac.at
+```
+Please replace `[user]` with the username given by the [sysadmin](mailto:michael.blaschek@univie.ac.at) and supply your password when asked for. This should give you access to the login node. If you are outside of the university network, then please goto [VPN](#VPN) below.

 ### VPN
+- [x] `u:account`
+
+The jet cluster is only accessible from within the virtual network of the university of Vienna. Therefore access from outside has to be granted via the [VPN-Service](https://vpn.univie.ac.at). Go there and login with your `u:account` and download the *Big-IP Edge* client for you system. 
+
+![](https://zid.univie.ac.at/fileadmin/user_upload/d_zid/zid-open/daten/datennetz/vpn/Windows/01_download_neu.png) 
+
+Links:
+ * [ZID-VPN](https://vpn.univie.ac.at/f5-w-68747470733a2f2f7a69642e756e697669652e61632e6174$$/vpn/)
+ * Linux (Ubuntu, Generic), Windows, Mac: [VPN user guides](https://vpn.univie.ac.at/f5-w-68747470733a2f2f7a69642e756e697669652e61632e6174$$/vpn/anleitungen/)
+ * Arch based AUR package [AUR f5fpc](https://aur.archlinux.org/packages/f5fpc/)
+
+Follow the install instructions for Windows, Mac and Linux and make sure the software works.
+
+![](https://zid.univie.ac.at/fileadmin/user_upload/d_zid/zid-open/daten/datennetz/vpn/Windows/08_verbinden.png)
+
+On Windows and MAc you get a nice gui that requires you to fill in the VPN server: `vpn.univie.ac.at` and username and password from the `u:account`. On Linux execute the following:
+```
+f5fpc -s -t vpn.univie.ac.at -u [user]
+```
+The status can be checked with `f5fpc --info`.

 ### Jupyterhub
+<img src="https://jupyter.org/assets/hublogo.svg" width="300px">
+
+SRVX1 serves a teaching [jupyterhub](https://jupyterhub.readthedocs.io/en/stable/) with a [jupyterlab](https://jupyterlab.readthedocs.io/en/stable/). It allows easy access for students and teachers.
+
+Goto: [](https://srvx1.img.univie.ac.at)
+Signup is only granted by teachers and requires a srvx1 user account. A new password is needed and a TOTP (time base one-time password) will be created. 
+
+Download/Use any of these required Authenticator Apps:
+ - [Authy (Mobile, Desktop)](https://authy.com/download/)
+ - [FreeOTP (Mobile)](https://freeotp.github.io/)
+ - [Google Auth (Mobile)](https://play.google.com/store/apps/details?id=com.google.android.apps.authenticator2)
+
+After registering the teacher/admin has to grant you access and you can login.
+
+:construction:

 ## System Information
 | Name | Value |