update, added servers, graphviz

.devcontainer/devcontainer.json

@@ -13,8 +13,9 @@
 	"forwardPorts": [3000],
 
 	// Use 'postCreateCommand' to run commands after the container is created.
-	"postCreateCommand": "pip3 install --user -r requirements.txt",
+	"postCreateCommand": "sudo apt-get update && sudo apt-get install -y graphviz && pip3 install --user -r requirements.txt",
 
+	"postStartCommand": "mkdocs serve -a localhost:3000 --dirtyreload",
 	// Configure tool-specific properties.
 	// "customizations": {},
 

.pages

 nav:
     - README.md
-    - SRVX1.md
-    - SRVX8.md
-    - Jet-Cluster.md
+    - Servers
     - VSC.md
     - ECMWF.md
     - TeachingHub.md

Getting Started.md

+# Getting Started @IMGW
+
+Welcome to the Department of Meteorology and Geophysics @ University of Vienna.
+
+Tasks to complete for newcomers:
+ - [ ] Get a server account
+ - [ ] Change your Password via [IPA (web)]() or [login (ssh)]() to a secure Password. Preferably use a password manager. [Tips]()
+ - [ ] Install a SSH-Client (Windows), e.g. 
+ - [ ] Optional setup ssh-key
+ - [ ] Familiarize yourself with the environment
+
+## Environment
+
+
+## Summary of Computing Resources
+

Latex/README.md

@@ -3,6 +3,7 @@
 *LaTeX (/ˈlɑːtɛx/ LAH-tekh or /ˈleɪtɛx/ LAY-tekh, often stylized as $`\LaTeX`$) is a software system for **document preparation**. When writing, **the writer uses plain text as opposed to the formatted text** found in "What You See Is What You Get" word processors like Microsoft Word, LibreOffice Writer and Apple Pages. The writer uses **markup tagging conventions to define the general structure of a document** (such as article, book, and letter), to stylise text throughout a document (such as bold and italics), and to add citations and cross-references. **A TeX distribution such as TeX Live** or MiKTeX is used to **produce an output file** (such as **PDF** or DVI) suitable for printing or digital distribution.* @[Wiki](https://en.wikipedia.org/wiki/LaTeX)
 
 What you need to get started:
+
 1. A latex distribution, e.g. texlive or Miktex
     * Or a online latex service, e.g. [Overleaf](www.overleaf.de), [latex4technics](https://www.latex4technics.com)
 2. An Editor, e.g. TexStudio or Texshop, ...

Misc/Shells.md

+# User Shells
+
+
+## Limits
+It is possible to address resource limits in a user shell, which makes sure that programs do not run 
+
+Check what resource limits you have:
+`ulimit -a`
+
+
+
+## Virtual terminals

Misc/Slurm.md

@@ -4,6 +4,9 @@ We use SLURM (https://slurm.schedmd.com/overview.html ) as a workload manager to
 
 *Important: You can only access a node via SSH when you have a SLURM allocation of that node.*
 
+Other resources:
+- [Slurm Tutorial]()
+
 ## Basics
 
 
@@ -19,6 +22,7 @@ Tools:
 - `queueinfo`
 - `watchjob`
 
+
 ```bash
 # Get information on your job
 jobinfo

README.md

@@ -23,9 +23,9 @@ Missing solutions are very welcome.
 
 Locations:
 
-- Staff + Students [SRVX1](SRVX1.md)
-- Staff + Remote Desktop [SRVX8](SRVX8.md)
-- Staff + Remote Desktop + Jupyterhub [Jet Cluster](Jet-Cluster.md)
+- Staff + Students [SRVX1](Servers/SRVX1.md)
+- Staff + Remote Desktop [SRVX8](Servers/SRVX8.md)
+- Staff + Remote Desktop + Jupyterhub [Jet Cluster](Servers/JET.md)
 - Staff + Students, Jupyterhub called [TeachingHub](TeachingHub.md)
 - Staff [Vienna Scientific Cluster (VSC)](VSC.md)
     - [VSC Training](https://vsc.ac.at/training)

Jet-Cluster.md → Servers/JET.md

@@ -28,7 +28,7 @@ Node Setup:
  - 2x Login Nodes
  - 7x Compute Nodes
 
-![GPFS](./mkdocs/img/GPFS-jet.png)
+![GPFS](../mkdocs/img/GPFS-jet.png)
 
 
 | Name | Value |

Servers/README.md

+# Servers 
+
+The Department of Meteorology and Geophysics maintains currently the following computing resources:
+
+- Teaching and Service Hub (SRVX1)
+- Remote Desktop (SRVX8)
+- Computing Cluster (JET)
+
+|
+<img src="../mkdocs/img/chip.png" width="50px">
+
+
+```graphviz dot attack_plan.png
+digraph Servers {
+    srvx1 [image="../mkdocs/img/chip.png"]
+    users -> srvx1
+}
+```
+
+
+# Containers & Services
+

SRVX1.md → Servers/SRVX1.md

@@ -46,8 +46,8 @@ Currently running:
 - TeachingHub (Jupyterhub)
 - Webdata - File hosting
 - YoPass - Password Sharing
-- iLibrarian - Paper Management (development)
-- Filetransfer.sh - File sharing service (development)
+- iLibrarian - Paper Management
+- Filetransfer.sh - File sharing service
 
 
 ## Jupyterhub
@@ -153,6 +153,7 @@ These are scripts in a common directory. Feel free to copy or edit as you like.
 Currently there is the possibility to run [singularity](https://singularity.hpcng.org/) containers on all our Servers. This is really similar to docker, but much more secure for multi-user servers. Almost every docker container can be converted into a singularity container. Some of the build recipes use docker.
 
 There are a number of prepared containers but more can be added. If you have a wish or an existing container useful for others please share. 
+
 ```yaml
 containers:
  - root: /home/swd/containers

Servers/Services.md

+# Services
+
+
+Information on available services:
+
+- [TeachingHub (Jupyterhub)]()
+- [Webdata - File hosting]()
+- [YoPass - Password Sharing]()
+- [iLibrarian - Paper Management]()
+- [Filetransfer.sh - File sharing service]()
+- [Uptime - Monitoring]()
+- [Gitlab Runner - Gitlab CI]()
+- 
+
+
+## TeachingHub
+
+## Webdata
+
+## YoPass
+
+## iLibrarian
+
+## Filetransfer
\ No newline at end of file

VSC.md

@@ -22,7 +22,7 @@ $ ssh user@vsc4.vsc.ac.at
 $ ssh user@vsc3.vsc.ac.at (old does not work anymore)
 ```
 
-Please follow some connection instruction on the [wiki](https://wiki.vsc.ac.at) which is similar to all other servers (e.g. [SRVX1](SRVX1.md)).
+Please follow some connection instruction on the [wiki](https://wiki.vsc.ac.at) which is similar to all other servers (e.g. [SRVX1](Servers/SRVX1.md)).
 The VSC is only available from within the UNINET (VPN, ...). Authentication requires a mobile phone.
 
 We have private nodes at our disposal and in order for you to use these you need to specify the correct account in the jobs you submit to the queueing system (SLURM). The correct information will be given to you in the registration email. 

mkdocs.yml

@@ -20,7 +20,7 @@ theme:
   features:
     - navigation.indexes 
     - navigation.top
-  logo: mkdocs/img/mkdocs.png
+  logo: mkdocs/img/logo_img2_color.png
   favicon: mkdocs/img/favicon.ico
   custom_dir: mkdocs/overrides
 plugins:
@@ -62,3 +62,7 @@ markdown_extensions:
   - pymdownx.tasklist
   - pymdownx.details
   - pymdownx.emoji
+  - mkdocs_graphviz
+
+#extra_javascript:
+#  - https://cdn.jsdelivr.net/gh/rod2ik/cdn@main/mkdocs/javascripts/mkdocs-graphviz.js
\ No newline at end of file

requirements.txt

@@ -8,4 +8,5 @@ mkdocs-awesome-pages-plugin
 mkdocs-git-revision-date-localized-plugin
 mkdocs-jupyter
 mkdocs-same-dir
-mkdocs-exclude
+mkdocs-exclude
\ No newline at end of file
+mkdocs-graphviz
\ No newline at end of file