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installscript.template 2.00 KiB
#!/bin/ksh
# ON ECGB:
# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server
# start with sbatch NAME_OF_THIS_FILE directly on machine
#SBATCH --workdir=/scratch/ms/$usergroup/$username
#SBATCH --qos=normal
#SBATCH --job-name=flex_ecmwf
#SBATCH --output=flex_ecmwf.%j.out
#SBATCH --error=flex_ecmwf.%j.out
#SBATCH --mail-type=FAIL
#SBATCH --time=12:00:00
## CRAY specific batch requests
##PBS -N flex_ecmwf
##PBS -q ns
##PBS -S /usr/bin/ksh
##PBS -o /scratch/ms/$usergroup/$username/flex_ecmwf.$${Jobname}.$${Job_ID}.out
# job output is in .ecaccess_DO_NOT_REMOVE
##PBS -j oe
##PBS -V
##PBS -l EC_threads_per_task=1
##PBS -l EC_memory_per_task=3200MB
set -x
export VERSION=$version_number
case $${HOST} in
*ecg*)
module unload grib_api
module unload eccodes
module unload python
module unload emos
module load python3/3.6.8-01
module load eccodes/2.13.0
module load emos/455-r64
export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
export MAKEFILE=$makefile
;;
*cca*)
module unload python
module switch PrgEnv-cray PrgEnv-intel
module load python3
module load eccodes/2.13.0
module load emos/455-r64
echo $${GROUP}
echo $${HOME}
echo $${HOME} | awk -F / '{print $1, $2, $3, $4}'
export GROUP=`echo $${HOME} | awk -F / '{print $4}'`
export SCRATCH=/scratch/ms/$${GROUP}/$${USER}
export FLEXPART_ROOT_SCRIPTS=$fp_root_scripts
export MAKEFILE=$makefile
;;
esac
mkdir -p $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION}
cd $${FLEXPART_ROOT_SCRIPTS}/flex_extract_v$${VERSION} # if FLEXPART_ROOT is not set this means cd to the home directory
tar -xvf $${HOME}/flex_extract_v$${VERSION}.tar
cd Source/Fortran
\rm *.o *.mod $fortran_program
make -f $${MAKEFILE} >flexcompile 2>flexcompile
ls -l $fortran_program >>flexcompile
if [ $$? -eq 0 ]; then
echo 'SUCCESS!' >>flexcompile
mail -s flexcompile.$${HOST}.$$$$ $${USER} <flexcompile
else
echo Environment: >>flexcompile
env >> flexcompile
mail -s "ERROR! flexcompile.$${HOST}.$$$$" $${USER} <flexcompile
fi