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Commit f5e40d8c authored by Anne Philipp's avatar Anne Philipp
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removed template for jobs created from installation

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#!/bin/ksh
# ON ECGB:
# start with ecaccess-job-submit -queueName ecgb NAME_OF_THIS_FILE on gateway server
# start with sbatch NAME_OF_THIS_FILE directly on machine
#SBATCH --workdir=/scratch/ms/at/km4a
#SBATCH --qos=normal
#SBATCH --job-name=flex_ecmwf
#SBATCH --output=flex_ecmwf.%j.out
#SBATCH --error=flex_ecmwf.%j.out
#SBATCH --mail-type=FAIL
#SBATCH --time=12:00:00
## CRAY specific batch requests
##PBS -N flex_ecmwf
##PBS -q np
##PBS -S /usr/bin/ksh
## -o /scratch/ms/at/km4a/flex_ecmwf.$${PBS_JOBID}.out
## job output is in .ecaccess_DO_NOT_REMOVE
##PBS -j oe
##PBS -V
##PBS -l EC_threads_per_task=24
##PBS -l EC_memory_per_task=32000MB
set -x
export VERSION=7.1.1
case $${HOST} in
*ecg*)
module unload grib_api
module unload eccodes
module unload python
module unload emos
module load python3/3.6.8-01
module load eccodes/2.13.0
module load emos/455-r64
export PATH=$${PATH}:$${HOME}/flex_extract_v7.1.1/Source/Python
;;
*cca*)
module unload python
module switch PrgEnv-cray PrgEnv-intel
module load python3
module load eccodes/2.13.0
module load emos/455-r64
export SCRATCH=$${TMPDIR}
export PATH=$${PATH}:$${HOME}/flex_extract_v7.1.1/Source/Python
;;
esac
cd $${SCRATCH}
mkdir -p python$$$$
cd python$$$$
export CONTROL=CONTROL
cat >$${CONTROL}<<EOF
$control_content
EOF
submit.py --controlfile=$${CONTROL} --inputdir=./work --outputdir=./work 1> prot 2>&1
if [ $? -eq 0 ] ; then
l=0
for muser in `grep -i MAILOPS $${CONTROL}`; do
if [ $${l} -gt 0 ] ; then
mail -s flex.$${HOST}.$$$$ $${muser} <prot
fi
l=$(($${l}+1))
done
else
l=0
for muser in `grep -i MAILFAIL $${CONTROL}`; do
if [ $${l} -gt 0 ] ; then
mail -s "ERROR! flex.$${HOST}.$$$$" $${muser} <prot
fi
l=$(($${l}+1))
done
fi
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