renamed documentation dir; moved pythontest to python dir

python/pythontest/TestData/CONTROL.temp

+DAY1
+DAY2
+DTIME 3
+TYPE AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC AN FC FC FC FC FC
+TIME 00 00 00 00 00 00 06 00 00 00 00 00 12 12 12 12 12 12 18 12 12 12 12 12
+STEP 00 01 02 03 04 05 00 07 08 09 10 11 00 01 02 03 04 05 00 07 08 09 10 11
+CLASS EI
+STREAM OPER
+NUMBER OFF
+EXPVER 1
+GRID 5000  
+LEFT -15000
+LOWER 30000
+UPPER 75000
+RIGHT 45000
+LEVEL 60
+LEVELIST 55/to/60
+RESOL 63
+GAUSS 1
+ACCURACY 16
+OMEGA 0
+OMEGADIFF 0
+ETA 0
+ETADIFF 0
+DPDETA 1
+SMOOTH 0
+FORMAT GRIB1
+ADDPAR 186/187/188/235/139/39
+PREFIX EI
+ECSTORAGE 0
+ECTRANS 1
+ECFSDIR ectmp:/${USER}/econdemand/
+MAILFAIL ${USER} 
+MAILOPS ${USER}
+GRIB2FLEXPART 0
+EOF
+

python/pythontest/TestData/ECMWF_ENV

+ECUID km4a
+ECGID at
+GATEWAY srvx8.img.univie.ac.at
+DESTINATION annep@genericSftp

python/pythontest/TestEcFlexpart.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import unittest
+import sys
+import EcFlexpart
+
+sys.path.append('../python')
+
+class TestEcFlexpart(unittest.TestCase):
+    '''
+    '''
+
+    def setUp(self):
+        pass
+
+    def test__init__():
+    # create an instance of EcFlexpart and get a dictionary of the
+    # class attributes, compare this dict with an expected dict!
+        return
+
+    def test_write_namelist():
+        # simple
+        return
+
+    def test_retrieve():
+        # not sure how to check
+        return
+
+
+# these functions should test the output and compare the results with an output
+# of the old version and check if there are no differences!!!
+# also check for errors?! Or check if it works for alle datasets and private public etc
+
+    #    - process_output
+    #    - create
+    #    - deacc_fluxes
+
+
+
+
+if __name__ == "__main__":
+    unittest.main()
\ No newline at end of file

python/pythontest/TestInput.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import unittest
+import os
+import sys
+sys.path.append('../python')
+from ControlFile import ControlFile
+import tools
+
+
+class TestInput(unittest.TestCase):
+    '''
+    Test class to test the reading of commandline arguments and
+    control file.
+    '''
+    # ToDo
+    # create more tests for input
+    # 1. nur controlfile reading
+    # 2. check of parameter
+
+    def setUp(self):
+        '''
+        '''
+        # Default values for ArgumentParser
+        self.args = {'start_date':None,
+                     'end_date':None,
+                     'date_chunk':None,
+                     'basetime':None,
+                     'step':None,
+                     'levelist':None,
+                     'area':None,
+                     'inputdir':None,
+                     'outputdir':None,
+                     'flexpart_root_scripts':None,
+                     'ppid':None,
+                     'job_template':'job.temp',
+                     'queue':None,
+                     'controlfile':'CONTROL.temp',
+                     'debug':0,
+                     }
+        #sys.argv = ['dummy.py', '--start_date=20180101', '--debug=1',
+        #            '--step=0/to/11/BY/3', '--area=20./20./0./90.']
+        sys.argv = ['dummy.py', '--start_date=20180101']
+
+        self.args = tools.get_commandline_arguments()
+
+        self.c = ControlFile('TestData/CONTROL.temp')
+
+        self.c.assign_args_to_control(self.args)
+
+        self.c.check_conditions()
+
+        return
+
+    def test_args_reading(self):
+
+        sys.argv = ['dummy.py', '--start_date=20180101', '--debug=1',
+                    '--step=0/to/11/BY/3', '--area=20./20./0./90.']
+
+        arguments = tools.get_commandline_arguments()
+
+        args_exp = {'start_date':'20180101',
+                    'end_date':None,
+                    'date_chunk':None,
+                    'basetime':None,
+                    'step':'0/to/11/BY/3',
+                    'levelist':None,
+                    'area':'20./20./0./90.',
+                    'inputdir':None,
+                    'outputdir':None,
+                    'flexpart_root_scripts':None,
+                    'ppid':None,
+                    'job_template':'job.temp',
+                    'queue':None,
+                    'controlfile':'CONTROL.temp',
+                    'debug':1,
+                    }
+
+        self.assertDictEqual(vars(arguments), args_exp)
+        return
+
+    def test_args_assignment(self):
+
+        import collections
+
+        # expected parametervalue:
+        exp_dict = {
+                    'accuracy': '16',
+                    'addpar': ['186', '187', '188', '235', '139', '39'],
+                    'area': None,
+                    'basetime': None,
+                    'controlfile': 'CONTROL.temp',
+                    'cwc': 0,
+                    'date_chunk': 3,
+                    'debug': 0,
+                    'destination': None,
+                    'dpdeta': '1',
+                    'dtime': '3',
+                    'ecfsdir': 'ectmp:/${USER}/econdemand/',
+                    'ecgid': None,
+                    'ecmwfdatadir': '/raid60/nas/tmc/Anne/Interpolation/flexextract/flexextract/python/../',
+                    'ecstorage': '0',
+                    'ectrans': '1',
+                    'ecuid': None,
+                    'end_date': '20180101',
+                    'eta': '0',
+                    'etadiff': '0',
+                    'etapar': 77,
+                    'exedir': '/raid60/nas/tmc/Anne/Interpolation/flexextract/flexextract/python/../src/',
+                    'expver': '1',
+                    'flexpart_root_scripts': '/raid60/nas/tmc/Anne/Interpolation/flexextract/flexextract/python/../',
+                    'format': 'GRIB1',
+                    'gateway': None,
+                    'gauss': '1',
+                    'grib2flexpart': '0',
+                    'grid': '5000',
+                    'inputdir': '../work',
+                    'job_template': 'job.temp',
+                    'left': '-15000',
+                    'level': '60',
+                    'levelist': '55/to/60',
+                    'lower': '30000',
+                    'mailfail': ['${USER}'],
+                    'mailops': ['${USER}'],
+                    'makefile': None,
+                    'marsclass': 'EI',
+                    'maxstep': 11,
+                    'number': 'OFF',
+                    'omega': '0',
+                    'omegadiff': '0',
+                    'outputdir': '../work',
+                    'prefix': 'EI',
+                    'resol': '63',
+                    'right': '45000',
+                    'smooth': '0',
+                    'start_date': '20180101',
+                    'step': ['00', '01', '02', '03', '04', '05', '00', '07', '08', '09', '10', '11', '00', '01', '02', '03', '04', '05', '00', '07', '08', '09', '10', '11'],
+                    'stream': 'OPER',
+                    'target': None,
+                    'time': ['00', '00', '00', '00', '00', '00', '06', '00', '00', '00', '00', '00', '12', '12', '12', '12', '12', '12', '18', '12', '12', '12', '12', '12'],
+                    'type': ['AN', 'FC', 'FC', 'FC', 'FC', 'FC', 'AN', 'FC', 'FC', 'FC', 'FC', 'FC', 'AN', 'FC', 'FC', 'FC', 'FC', 'FC', 'AN', 'FC', 'FC', 'FC', 'FC', 'FC'],
+                    'upper': '75000',
+                    'wrf': 0}
+
+        exp_dict = collections.OrderedDict(sorted(exp_dict.items()))
+        cdict = collections.OrderedDict(sorted(vars(self.c).items()))
+
+        # remove content which isn't comparable for different users
+        # or different operating systems
+        del cdict['ecfsdir_expanded']
+        del cdict['mailops_expanded']
+        del cdict['mailfail_expanded']
+
+        #print 'cdict\n', cdict
+        #print 'exp_dict\n', exp_dict
+
+        #assert cdict == exp_dict
+        self.assertDictEqual(cdict, exp_dict)
+
+        return
+
+if __name__ == "__main__":
+    unittest.main()

python/pythontest/TestInstall.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import unittest
+import sys
+import os
+import inspect
+sys.path.append('../python')
+import install
+
+
+class TestTools(unittest.TestCase):
+    '''
+    '''
+
+    def setUp(self):
+        pass
+
+
+    def test_mk_tarball(self):
+        ecd = os.path.dirname(os.path.abspath(inspect.getfile(
+            inspect.currentframe()))) + '/../'
+        #print ecd
+        install.mk_tarball(ecd)
+
+
+
+if __name__ == "__main__":
+    unittest.main()
\ No newline at end of file

python/pythontest/TestPathes.py

+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+import pytest
+
+
+def test_vtable():
+    print "vtable test"
+