.docs/.swagger/api.base.yaml

@@ -11,7 +11,7 @@ components:
       type: http
 externalDocs:
   description: Project Website
-  url: https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.7/
+  url: https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.5/
 info:
   contact:
     email: andreas.rauber@tuwien.ac.at
@@ -24,7 +24,7 @@ info:
     name: Apache 2.0
     url: https://www.apache.org/licenses/LICENSE-2.0
   title: DBRepo REST API
-  version: 1.4.7
+  version: 1.5.1
 openapi: 3.1.0
 servers:
   - description: Test Instance

.docs/.swagger/api.yaml

@@ -16,7 +16,7 @@ info:
     name: Apache 2.0
     url: 'https://www.apache.org/licenses/LICENSE-2.0'
   title: DBRepo REST API
-  version: 1.4.7
+  version: 1.5.1
 servers:
   - description: Test Instance
     url: 'https://test.dbrepo.tuwien.ac.at'
@@ -24,7 +24,7 @@ servers:
     url: 'http://localhost'
 externalDocs:
   description: Project Website
-  url: 'https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.7/'
+  url: 'https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.5/'
 paths:
   /api/analyse/datatypes:
     get:

.docs/changelog.md

@@ -2,6 +2,19 @@
 author: Martin Weise
 ---
 
+## v1.5.1 (2024-11-09)
+
+[:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.5.1)
+
+### What's Changed
+
+#### Fixes
+
+* Bug where the data volume could not be calculated when the data length column in the Metadata Database is `null`
+  in [#462](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/issues/462).
+* Bug where the schema could not be created manually 
+  in [#461](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/issues/461).
+
 ## v1.5.0 (2024-11-06)
 
 [:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.5.0)

.docs/concepts/index.md

@@ -18,10 +18,10 @@ environments.
 ## Architecture
 
 The repository is designed as a service-based architecture to ensure scalability and the utilization of various
-technologies. The conceptualized microservices operate the basic database operations, data versioning as well as
+technologies. The conceptualized microservices (c.f. [Fig. 1](#fig1)) operate the basic database operations, data versioning as well as
 *findability*, *accessability*, *interoperability* and *reuseability* (FAIR).
 
-<figure markdown>
+<figure id="fig1" markdown>
 ![DBRepo architecture](../images/architecture-docker-compose.svg)
-<figcaption>Architecture of the services deployed via Docker Compose</figcaption>
+<figcaption>Fig. 1: Architecture of the services deployed via Docker Compose</figcaption>
 </figure>
\ No newline at end of file

.docs/index.md

@@ -14,7 +14,7 @@ author: Martin Weise
 ![Maintainability Rating](./images/maintainability.svg)
 ![Security Rating](./images/security.svg)
 
-Documentation for version: [v1.5.0](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
+Documentation for version: [v1.5.1](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
 
 DBRepo is a repository for data in databases that are used from the beginning until the end of a research 
 project supporting data evolution, -citation and -versioning. It implements the query store of the 
@@ -46,4 +46,7 @@ Installing DBRepo is very easy or
 
 ## How can I try DBRepo?
 
-[:fontawesome-solid-flask:  Demonstration Instance](https://test.dbrepo.tuwien.ac.at){ .md-button .md-button--primary target="_blank" }
\ No newline at end of file
+There's a hosted [demo environment](https://test.dbrepo.tuwien.ac.at) maintained 
+by [DS-IFS](https://informatics.tuwien.ac.at/orgs/e194-04) where you can explore DBRepo without installing it locally.
+
+[:fontawesome-solid-flask:  Demo Environment](https://test.dbrepo.tuwien.ac.at){ .md-button .md-button--primary target="_blank" }
\ No newline at end of file

.docs/kubernetes.md

@@ -13,7 +13,7 @@ helm upgrade --install dbrepo \
   -n dbrepo \
   "oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" \
   --values ./values.yaml \
-  --version "1.5.0" \
+  --version "1.5.1" \
   --create-namespace \
   --cleanup-on-fail
 ```

.docs/stylesheets/extra.css

 :root,
 [data-md-color-accent=indigo] {
-  --md-hue: 230;
-  --md-default-bg-color: hsla(230, 15%, 21%, 1);
   --md-primary-fg-color: #006699;
   --md-accent-fg-color: #005c8a;
   /* darken 10% */
   --md-primary-fg-color--dark: #00537c;
   /* darken 10% */ }
 
+[data-md-color-scheme="slate"] {
+  --md-hue: 230;
+  --md-default-bg-color: hsla(230, 15%, 21%, 1); }
+
 img.img-border {
   border: 1px solid #b3b3b3; }
 
@@ -30,3 +32,5 @@ img.img-border {
 
 .md-banner {
   background-color: var(--md-primary-fg-color--dark); }
+
+/*# sourceMappingURL=extra.css.map */

.docs/stylesheets/extra.css.map

 {
 "version": 3,
-"mappings": "AAAA;6BAC8B;EAC5B,qBAAqB,CAAC,QAAQ;EAC9B,oBAAoB,CAAC,QAAQ;EAAE,gBAAgB;EAC/C,2BAA2B,CAAC,QAAQ;EAAE,gBAAgB;;AAGxD,cAAe;EACb,MAAM,EAAE,iBAAiB;;AAG3B,yCAA0C;EACxC,KAAK,EAAE,gBAAgB;;AAIvB,oGACQ;EACN,KAAK,EAAE,gCAAgC;EACvC,UAAU,EAAE,OAAO;;AAIvB;0DAC2D;EACzD,KAAK,EAAE,0BAA0B;EACjC,aAAa,EAAE,oCAAoC;EAEnD;;kEACQ;IACN,KAAK,EAAE,gCAAgC;IACvC,aAAa,EAAE,0CAA0C;;AAK7D,UAAW;EACT,gBAAgB,EAAE,gCAAgC",
+"mappings": "AAAA;6BAC8B;EAC5B,qBAAqB,CAAC,QAAQ;EAC9B,oBAAoB,CAAC,QAAQ;EAAE,gBAAgB;EAC/C,2BAA2B,CAAC,QAAQ;EAAE,gBAAgB;;AAGxD,8BAA+B;EAC7B,QAAQ,CAAC,IAAI;EACb,qBAAqB,CAAC,uBAAuB;;AAG/C,cAAe;EACb,MAAM,EAAE,iBAAiB;;AAG3B,yCAA0C;EACxC,KAAK,EAAE,gBAAgB;;AAIvB,oGACQ;EACN,KAAK,EAAE,gCAAgC;EACvC,UAAU,EAAE,OAAO;;AAIvB;0DAC2D;EACzD,KAAK,EAAE,0BAA0B;EACjC,aAAa,EAAE,oCAAoC;EAEnD;;kEACQ;IACN,KAAK,EAAE,gCAAgC;IACvC,aAAa,EAAE,0CAA0C;;AAK7D,UAAW;EACT,gBAAgB,EAAE,gCAAgC",
 "sources": ["extra.scss"],
 "names": [],
 "file": "extra.css"

.docs/stylesheets/extra.scss

 :root,
 [data-md-color-accent=indigo] {
-  --md-hue: 230;
-  --md-default-bg-color: hsla(230, 15%, 21%, 1);
   --md-primary-fg-color: #006699;
   --md-accent-fg-color: #005c8a; /* darken 10% */
   --md-primary-fg-color--dark: #00537c; /* darken 10% */
 }
 
+[data-md-color-scheme="slate"] {
+  --md-hue: 230;
+  --md-default-bg-color: hsla(230, 15%, 21%, 1);
+}
+
 img.img-border {
   border: 1px solid #b3b3b3;
 }

.gitignore

@@ -55,13 +55,12 @@ fda-ui/
 # Generated
 ready
 
-# crt
+# Certificates
 *.crt
-*.key
 *.p12
 
 # Environment
-.docker/.env
+/.env
 
 # X509
 root.crt

.gitlab-ci.yml

@@ -4,8 +4,8 @@ variables:
   TESTCONTAINERS_RYUK_DISABLED: "false"
   PYTHON_VERSION: "3.11"
   DOC_VERSION: "1.5"
-  APP_VERSION: "1.5.0"
-  CHART_VERSION: "1.5.0"
+  APP_VERSION: "1.5.1"
+  CHART_VERSION: "1.5.1"
   CACHE_FALLBACK_KEY: ${CI_DEFAULT_BRANCH}
   # This will supress any download for dependencies and plugins or upload messages which would clutter the console log.
   # `showDateTime` will show the passed time in milliseconds. You need to specify `--batch-mode` to make this work.
@@ -162,9 +162,18 @@ verify-install-script:
   variables:
     SKIP_CHECKS: 1
   script:
-    - apk add bash curl
-    - bash install.sh
-    - exit 0
+    - "apk add bash curl"
+    - "curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-${DOC_VERSION}/install.sh | bash | grep 'Success!'"
+
+verify-dist:
+  image: docker.io/alpine:3.20
+  stage: verify
+  only:
+    refs:
+      - /^release-.*/
+  script:
+    - "apk add curl"
+    - "curl -v --output /dev/null --fail https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/${APP_VERSION}/dist.tar.gz"
 
 lint-helm-chart:
   image: docker.io/alpine:3.20
@@ -393,6 +402,10 @@ release-helm:
     refs:
       - /^release-.*/
   when: manual
+  needs:
+    - build-helm
+  dependencies:
+    - build-helm
   before_script:
     - "docker logout ${CI_REGISTRY_URL}"
     - "echo ${CI_REGISTRY_PASSWORD} | docker login --username ${CI_REGISTRY_USER} --password-stdin ${CI_REGISTRY_URL}"
@@ -427,7 +440,7 @@ release-docs:
     - "cp .docs/.swagger/swagger-ui.html ./final/${DOC_VERSION}/rest/index.html" # swagger
     - "cp .docs/.swagger/custom.css ./final/${DOC_VERSION}/rest/custom.css" # swagger
     - "cp -r ./site/* ./final/${DOC_VERSION}" # mkdocs
-    - "cp .docker/dist.tar.gz ./final/${DOC_VERSION}/dist.tar.gz" # dist
+    - "cp .docker/dist.tar.gz ./final/${APP_VERSION}/dist.tar.gz" # dist
     - "cp .docs/redirect.html ./final/${APP_VERSION}/index.html" # redirect patch docs
     - "bash ./.gitlab/gen-badge.sh"
     - eval $(ssh-agent -s)
@@ -439,7 +452,7 @@ release-docs:
     - "scp -oHostKeyAlgorithms=+ssh-rsa -oPubkeyAcceptedAlgorithms=+ssh-rsa final.tar.gz $CI_DOC_USER@$CI_DOC_IP:final.tar.gz"
     - "scp -oHostKeyAlgorithms=+ssh-rsa -oPubkeyAcceptedAlgorithms=+ssh-rsa versions.json $CI_DOC_USER@$CI_DOC_IP:/system/user/ifs/infrastructures/public_html/dbrepo/versions.json"
     - "scp -oHostKeyAlgorithms=+ssh-rsa -oPubkeyAcceptedAlgorithms=+ssh-rsa .docs/redirect.html $CI_DOC_USER@$CI_DOC_IP:/system/user/ifs/infrastructures/public_html/dbrepo/index.html"
-    - 'ssh -oHostKeyAlgorithms=+ssh-rsa -oPubkeyAcceptedAlgorithms=+ssh-rsa $CI_DOC_USER@$CI_DOC_IP "rm -rf /system/user/ifs/infrastructures/public_html/dbrepo/${DOC_VERSION}; tar xzf ./final.tar.gz; rm -f ./final.tar.gz; cp -r ./final/* /system/user/ifs/infrastructures/public_html/dbrepo/${DOC_VERSION}; rm -rf ./final"'
+    - 'ssh -oHostKeyAlgorithms=+ssh-rsa -oPubkeyAcceptedAlgorithms=+ssh-rsa $CI_DOC_USER@$CI_DOC_IP "rm -rf /system/user/ifs/infrastructures/public_html/dbrepo/${DOC_VERSION}; tar xzf ./final.tar.gz; rm -f ./final.tar.gz; cp -r ./final/* /system/user/ifs/infrastructures/public_html/dbrepo; rm -rf ./final"'
 
 release-libs:
   stage: release

Makefile

 .PHONY: all
 
-APP_VERSION ?= 1.5.0
-CHART_VERSION ?= 1.5.0
+APP_VERSION ?= 1.5.1
+CHART_VERSION ?= 1.5.1
 REPOSITORY_URL ?= registry.datalab.tuwien.ac.at/dbrepo
 
 .PHONY: all

README.md

@@ -14,7 +14,7 @@ If you have [Docker](https://docs.docker.com/engine/install/) already installed
 with:
 
 ```bash
-curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.5.0/install.sh | bash
+curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.5/install.sh | bash
 ```
 
 ## Documentation

dbrepo-analyse-service/Pipfile

@@ -21,7 +21,7 @@ numpy = "*"
 pandas = "*"
 minio = "*"
 pydantic = "*"
-dbrepo = {path = "./lib/dbrepo-1.5.0.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.5.1.tar.gz"}
 opensearch-py = "*"
 
 [dev-packages]

dbrepo-data-service/pom.xml

@@ -11,7 +11,7 @@
     <groupId>at.tuwien</groupId>
     <artifactId>dbrepo-data-service</artifactId>
     <name>dbrepo-data-service</name>
-    <version>1.5.0</version>
+    <version>1.5.1</version>
 
     <description>Service that manages the data</description>
 

dbrepo-data-service/querystore/pom.xml

@@ -6,12 +6,12 @@
     <parent>
         <groupId>at.tuwien</groupId>
         <artifactId>dbrepo-data-service</artifactId>
-        <version>1.5.0</version>
+        <version>1.5.1</version>
     </parent>
 
     <artifactId>dbrepo-data-service-querystore</artifactId>
     <name>dbrepo-data-service-querystore</name>
-    <version>1.5.0</version>
+    <version>1.5.1</version>
 
     <dependencies/>
 

dbrepo-data-service/report/pom.xml

@@ -6,12 +6,12 @@
     <parent>
         <groupId>at.tuwien</groupId>
         <artifactId>dbrepo-data-service</artifactId>
-        <version>1.5.0</version>
+        <version>1.5.1</version>
     </parent>
 
     <artifactId>report</artifactId>
     <name>dbrepo-data-service-report</name>
-    <version>1.5.0</version>
+    <version>1.5.1</version>
     <description>
         This module is only intended for the pipeline coverage report. See the detailed report in the
         respective modules