.docker/docker-compose.yml

@@ -114,7 +114,7 @@ services:
     init: true
     restart: "no"
     container_name: dbrepo-auth-service-init
-    image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.6.5
     environment:
       AUTH_SERVICE_ADMIN: ${AUTH_SERVICE_ADMIN:-admin}
       AUTH_SERVICE_ADMIN_PASSWORD: ${AUTH_SERVICE_ADMIN_PASSWORD:-admin}
@@ -135,7 +135,7 @@ services:
     restart: "no"
     container_name: dbrepo-metadata-service
     hostname: metadata-service
-    image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.6.5
     volumes:
       - "${SHARED_VOLUME:-/tmp}:/tmp"
     environment:
@@ -198,7 +198,7 @@ services:
     restart: "no"
     container_name: dbrepo-analyse-service
     hostname: analyse-service
-    image: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.6.5
     environment:
       AUTH_SERVICE_CLIENT: ${AUTH_SERVICE_CLIENT:-dbrepo-client}
       AUTH_SERVICE_CLIENT_SECRET: ${AUTH_SERVICE_CLIENT:-MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}
@@ -253,7 +253,7 @@ services:
     restart: "no"
     container_name: dbrepo-search-db
     hostname: search-db
-    image: registry.datalab.tuwien.ac.at/dbrepo/search-db:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/search-db:1.6.5
     healthcheck:
       test: curl -sSL localhost:9200/_plugins/_security/health | jq .status | grep UP
       interval: 10s
@@ -277,7 +277,7 @@ services:
     restart: "no"
     container_name: dbrepo-search-service
     hostname: search-service
-    image: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.6.5
     environment:
       AUTH_SERVICE_CLIENT: ${AUTH_SERVICE_CLIENT:-dbrepo-client}
       AUTH_SERVICE_CLIENT_SECRET: ${AUTH_SERVICE_CLIENT_SECRET:-MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}
@@ -301,7 +301,7 @@ services:
     restart: "no"
     container_name: dbrepo-ui
     hostname: ui
-    image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.6.5
     environment:
       NUXT_PUBLIC_API_CLIENT: "${BASE_URL:-http://localhost}"
       NUXT_PUBLIC_API_SERVER: "${BASE_URL:-http://gateway-service}"
@@ -381,7 +381,7 @@ services:
     init: true
     container_name: dbrepo-search-service-init
     hostname: search-service-init
-    image: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.6.5
     environment:
       LOG_LEVEL: ${LOG_LEVEL:-info}
       METADATA_SERVICE_ENDPOINT: ${METADATA_SERVICE_ENDPOINT:-http://metadata-service:8080}
@@ -438,7 +438,7 @@ services:
     restart: "no"
     container_name: dbrepo-dashboard-service
     hostname: dashboard-service
-    image: registry.datalab.tuwien.ac.at/dbrepo/dashboard-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/dashboard-service:1.6.5
     ports:
       - "3000:3000"
     volumes:
@@ -465,7 +465,7 @@ services:
     init: true
     container_name: dbrepo-storage-service-init
     hostname: storage-service-init
-    image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.6.5
     environment:
       S3_ACCESS_KEY_ID: ${S3_ACCESS_KEY_ID:-seaweedfsadmin}
       S3_BUCKET: "${S3_BUCKET:-dbrepo}"
@@ -511,7 +511,7 @@ services:
     restart: "no"
     container_name: dbrepo-data-service
     hostname: data-service
-    image: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.6.4
+    image: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.6.5
     volumes:
       - "${SHARED_VOLUME:-/tmp}:/tmp"
     environment:

.docs/.openapi/api.base.yaml

@@ -24,7 +24,7 @@ info:
     name: Apache 2.0
     url: https://www.apache.org/licenses/LICENSE-2.0
   title: DBRepo REST API
-  version: 1.6.4
+  version: 1.6.5
 openapi: 3.1.0
 servers:
   - description: Test Instance

.docs/api/data-db.md

@@ -22,6 +22,14 @@ Any number of MariaDB ata databases can be integrated into DBRepo, even non-empt
 registered in the Metadata Database to be visible in the [User Interface](../ui) and usable from e.g. the Python
 Library.
 
+## Configuration
+
+By default, the Data Database is configured as a cluster of three nodes where each node has a maximum of 2048 MiB RAM
+available. As recommended by
+[MariaDB](https://mariadb.com/kb/en/mariadb-memory-allocation/#allocating-ram-for-mariadb-the-short-answer), we set
+`innodb_buffer_pool_size=1430M` (70% of the available RAM). If you have more RAM available, you should set the variable
+accordingly to improve the performance.
+
 ## Data
 
 The procedures requires the in parameter of the `hash_table` stored procedure to have the same collation as the

.docs/api/metadata-db.md

@@ -34,6 +34,14 @@ services:
     ...
 ```
 
+## Configuration
+
+By default, the Metadata Database is configured as a cluster of three nodes where each node has a maximum of 2048 MiB
+RAM available. As recommended by
+[MariaDB](https://mariadb.com/kb/en/mariadb-memory-allocation/#allocating-ram-for-mariadb-the-short-answer), we set
+`innodb_buffer_pool_size=1430M` (70% of the available RAM). If you have more RAM available, you should set the variable
+accordingly to improve the performance.
+
 ## Image
 
 :octicons-tag-16:{ title="Minimum version" } 1.4.4

.docs/changelog.md

@@ -2,6 +2,16 @@
 author: Martin Weise
 ---
 
+## v1.6.5 (2025-02-18)
+
+[:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.6.5)
+
+### What's Changed
+
+#### Fixes
+
+* Fixed a bug where listing the views in the Python library did not work.
+
 ## v1.6.4 (2025-02-14)
 
 [:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.6.4)

.docs/index.md

@@ -14,7 +14,7 @@ author: Martin Weise
 ![Maintainability Rating](./images/maintainability.svg)
 ![Security Rating](./images/security.svg)
 
-Documentation for version: [v1.6.4](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
+Documentation for version: [v1.6.5](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
 
 DBRepo is a repository for data in databases that are used from the beginning until the end of a research 
 project supporting data evolution, -citation and -versioning. It implements the query store of the 

.docs/kubernetes.md

@@ -14,7 +14,7 @@ helm upgrade --install dbrepo \
   -n dbrepo \
   "oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" \
   --values ./values.yaml \
-  --version "1.6.4" \
+  --version "1.6.5" \
   --create-namespace \
   --cleanup-on-fail
 ```

.gitlab-ci.yml

@@ -10,8 +10,8 @@ variables:
   SONARQUBE_VERSION: "10.0"
   BUN_VERSION: "1.1.40"
   DOC_VERSION: "1.6"
-  APP_VERSION: "1.6.4"
-  CHART_VERSION: "1.6.4"
+  APP_VERSION: "1.6.5"
+  CHART_VERSION: "1.6.5"
   CACHE_FALLBACK_KEY: "${CI_DEFAULT_BRANCH}"
   # This will supress any download for dependencies and plugins or upload messages which would clutter the console log.
   # `showDateTime` will show the passed time in milliseconds. You need to specify `--batch-mode` to make this work.
@@ -302,7 +302,7 @@ test-analyse-service:
   script:
     - "pip install pipenv"
     - "pipenv install gunicorn && pipenv install --dev --system --deploy"
-    - cd ./dbrepo-analyse-service/ && coverage run -m pytest test/test_determine_dt.py test/test_determine_pk.py test/test_s3_client.py --junitxml=report.xml && coverage html --omit="test/*" && coverage report --omit="test/*" > ./coverage.txt
+    - cd ./dbrepo-analyse-service/ && coverage run -m pytest tests/test_determine_dt.py tests/test_determine_pk.py tests/test_s3_client.py --junitxml=report.xml && coverage html --omit="tests/*" && coverage report --omit="tests/*" > ./coverage.txt
     - "cat ./coverage.txt | grep -o 'TOTAL[^%]*%'"
   artifacts:
     when: always
@@ -324,7 +324,7 @@ test-auth-service-init:
     - "pip install pipenv"
     - "pipenv install gunicorn && pipenv install --dev --system --deploy"
   script:
-    - cd ./dbrepo-auth-service/init/ && coverage run -m pytest test/test_unit_app.py --junitxml=report.xml && coverage html --omit="test/*" && coverage report --omit="test/*" > ./coverage.txt
+    - cd ./dbrepo-auth-service/init/ && coverage run -m pytest tests/test_unit_app.py --junitxml=report.xml && coverage html --omit="tests/*" && coverage report --omit="tests/*" > ./coverage.txt
     - "cat ./coverage.txt | grep -o 'TOTAL[^%]*%'"
   artifacts:
     when: always
@@ -346,16 +346,16 @@ test-search-service:
   dependencies:
     - build-search-service
   before_script:
-    - "cp -r ./dbrepo-search-service/init/clients ./dbrepo-search-service/clients"
-    - "cp -r ./dbrepo-search-service/init/omlib ./dbrepo-search-service/omlib"
-    - "cp -r ./dbrepo-search-service/init/test/rsa ./dbrepo-search-service/test/rsa"
-    - "cp ./dbrepo-search-service/init/test/test_keycloak_client.py ./dbrepo-search-service/test"
-    - "cp ./dbrepo-search-service/init/test/test_opensearch_client.py ./dbrepo-search-service/test"
+    - "cp -r ./dbrepo-search-service/init/clients ./dbrepo-search-service"
+    - "cp -r ./dbrepo-search-service/init/omlib ./dbrepo-search-service"
+    - "cp -r ./dbrepo-search-service/init/tests/rsa ./dbrepo-search-service/tests"
+    - "cp ./dbrepo-search-service/init/tests/test_keycloak_client.py ./dbrepo-search-service/tests"
+    - "cp ./dbrepo-search-service/init/tests/test_opensearch_client.py ./dbrepo-search-service/tests"
     - "cp ./dbrepo-search-service/init/friendly_names_overrides.json ./dbrepo-search-service/friendly_names_overrides.json"
   script:
     - "pip install pipenv"
     - "pipenv install gunicorn && pipenv install --dev --system --deploy"
-    - cd ./dbrepo-search-service/ && coverage run -m pytest test/test_app.py test/test_jwt.py test/test_opensearch_client.py test/test_keycloak_client.py --junitxml=report.xml && coverage html && coverage report > ./coverage.txt
+    - cd ./dbrepo-search-service/ && coverage run -m pytest tests/test_app.py tests/test_jwt.py tests/test_opensearch_client.py tests/test_keycloak_client.py --junitxml=report.xml && coverage html && coverage report > ./coverage.txt
     - "cat ./coverage.txt | grep -o 'TOTAL[^%]*%'"
   artifacts:
     when: always
@@ -379,7 +379,7 @@ test-search-service-init:
   script:
     - "pip install pipenv"
     - "pipenv install gunicorn && pipenv install --dev --system --deploy"
-    - cd ./dbrepo-search-service/init/ && coverage run -m pytest test/test_app.py test/test_keycloak_client.py test/test_opensearch_client.py --junitxml=report.xml && coverage html && coverage report > ./coverage.txt
+    - cd ./dbrepo-search-service/init/ && coverage run -m pytest tests/test_app.py tests/test_keycloak_client.py tests/test_opensearch_client.py --junitxml=report.xml && coverage html && coverage report > ./coverage.txt
     - "cat ./coverage.txt | grep -o 'TOTAL[^%]*%'"
   artifacts:
     when: always
@@ -403,7 +403,7 @@ test-lib:
   script:
     - "pip install pipenv"
     - "pipenv install gunicorn && pipenv install --dev --system --deploy"
-    - cd ./lib/python/ && coverage run -m pytest tests/test_unit_analyse.py tests/test_unit_container.py tests/test_unit_database.py tests/test_unit_identifier.py tests/test_unit_license.py tests/test_unit_query.py tests/test_unit_rest_client.py tests/test_unit_table.py tests/test_unit_user.py tests/test_unit_view.py --junitxml=report.xml && coverage html --omit="test/*" && coverage report --omit="test/*" > ./coverage.txt
+    - cd ./lib/python/ && coverage run -m pytest tests/test_unit_analyse.py tests/test_unit_container.py tests/test_unit_database.py tests/test_unit_identifier.py tests/test_unit_license.py tests/test_unit_query.py tests/test_unit_rest_client.py tests/test_unit_table.py tests/test_unit_user.py tests/test_unit_view.py tests/test_unit_rest_client.py --junitxml=report.xml && coverage html --omit="tests/*" && coverage report --omit="tests/*" > ./coverage.txt
     - "cat ./coverage.txt | grep -o 'TOTAL[^%]*%'"
   artifacts:
     when: always
@@ -428,7 +428,7 @@ test-ui:
     - "docker run --name dbrepo-ui -e NODE_OPTIONS='--max_old_space_size=256' -p 3000:3000 -d dbrepo-ui:latest"
   script:
     - "sleep 30"
-    - "ENDPOINT=http://localhost:3000 bash ./dbrepo-ui/test/test_heap.sh"
+    - "ENDPOINT=http://localhost:3000 bash ./dbrepo-ui/tests/test_heap.sh"
 
 release-images:
   stage: release

Makefile

 .PHONY: all
 
-APP_VERSION ?= 1.6.4
-CHART_VERSION ?= 1.6.4
+APP_VERSION ?= 1.6.5
+CHART_VERSION ?= 1.6.5
 REPOSITORY_URL ?= registry.datalab.tuwien.ac.at/dbrepo
 
 .PHONY: all

dbrepo-analyse-service/Pipfile

@@ -21,7 +21,7 @@ numpy = "*"
 pandas = "*"
 minio = "*"
 pydantic = "*"
-dbrepo = {path = "./lib/dbrepo-1.6.4.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.6.5.tar.gz"}
 opensearch-py = "*"
 
 [dev-packages]

dbrepo-analyse-service/Pipfile.lock

 {
     "_meta": {
         "hash": {
-            "sha256": "b24e4e03891018663e2746e2dbe5a9fe716f823be5ccb310c90e8e68b9ffd1d5"
+            "sha256": "1013ec1b081d79912b7ec0878b4824cb4f885a96fec148ae728d746de601b493"
         },
         "pipfile-spec": 6,
         "requires": {
@@ -180,20 +180,20 @@
         },
         "boto3": {
             "hashes": [
-                "sha256:7784590369a9d545bb07b2de56b6ce4d5a5e232883a957f704c3f842caeba155",
-                "sha256:8c2c2a4ccdfe35dd2611ee1b7473dd2383948415c777e42dc4e7f1ebe371fe8c"
+                "sha256:39957eabdce009353d72d131046489fbbfa15891865d5f069f1e8bfa414e6b81",
+                "sha256:768c8a4d4a6227fe2258105efa086f1424cba5ca915a5eb2305b2cd979306ad1"
             ],
             "index": "pypi",
             "markers": "python_version >= '3.8'",
-            "version": "==1.36.19"
+            "version": "==1.36.22"
         },
         "botocore": {
             "hashes": [
-                "sha256:98882c106fec4c08678ea028199f7f5119550fab95d682b30846f7aae04b7bec",
-                "sha256:cdf6729f601f82b1acdb9004b1f88b57cfb470f576394cdb3bbf5150f7fafb5b"
+                "sha256:59520247d5a479731724f97c995d5a1c2aae3b303b324f39d99efcfad1d3019e",
+                "sha256:75d6b34acb0686ee4d54ff6eb285e78ccfe318407428769d1e3e13351714d890"
             ],
             "markers": "python_version >= '3.8'",
-            "version": "==1.36.19"
+            "version": "==1.36.22"
         },
         "certifi": {
             "hashes": [
@@ -421,9 +421,9 @@
         },
         "dbrepo": {
             "hashes": [
-                "sha256:a518aee79540d9e302b161e7e10072f50730489da19368f00a1e68204009ce44"
+                "sha256:e2312f0d3cff34934578a16b01d646d8309e3a3d1bb4cbda9f984acf97824e00"
             ],
-            "path": "./lib/dbrepo-1.6.4.tar.gz"
+            "path": "./lib/dbrepo-1.6.5.tar.gz"
         },
         "events": {
             "hashes": [
@@ -953,65 +953,65 @@
         },
         "numpy": {
             "hashes": [
-                "sha256:02935e2c3c0c6cbe9c7955a8efa8908dd4221d7755644c59d1bba28b94fd334f",
-                "sha256:0349b025e15ea9d05c3d63f9657707a4e1d471128a3b1d876c095f328f8ff7f0",
-                "sha256:09d6a2032faf25e8d0cadde7fd6145118ac55d2740132c1d845f98721b5ebcfd",
-                "sha256:0bc61b307655d1a7f9f4b043628b9f2b721e80839914ede634e3d485913e1fb2",
-                "sha256:0eec19f8af947a61e968d5429f0bd92fec46d92b0008d0a6685b40d6adf8a4f4",
-                "sha256:106397dbbb1896f99e044efc90360d098b3335060375c26aa89c0d8a97c5f648",
-                "sha256:128c41c085cab8a85dc29e66ed88c05613dccf6bc28b3866cd16050a2f5448be",
-                "sha256:149d1113ac15005652e8d0d3f6fd599360e1a708a4f98e43c9c77834a28238cb",
-                "sha256:159ff6ee4c4a36a23fe01b7c3d07bd8c14cc433d9720f977fcd52c13c0098160",
-                "sha256:22ea3bb552ade325530e72a0c557cdf2dea8914d3a5e1fecf58fa5dbcc6f43cd",
-                "sha256:23ae9f0c2d889b7b2d88a3791f6c09e2ef827c2446f1c4a3e3e76328ee4afd9a",
-                "sha256:250c16b277e3b809ac20d1f590716597481061b514223c7badb7a0f9993c7f84",
-                "sha256:2ec6c689c61df613b783aeb21f945c4cbe6c51c28cb70aae8430577ab39f163e",
-                "sha256:2ffbb1acd69fdf8e89dd60ef6182ca90a743620957afb7066385a7bbe88dc748",
-                "sha256:3074634ea4d6df66be04f6728ee1d173cfded75d002c75fac79503a880bf3825",
-                "sha256:356ca982c188acbfa6af0d694284d8cf20e95b1c3d0aefa8929376fea9146f60",
-                "sha256:3fbe72d347fbc59f94124125e73fc4976a06927ebc503ec5afbfb35f193cd957",
-                "sha256:40c7ff5da22cd391944a28c6a9c638a5eef77fcf71d6e3a79e1d9d9e82752715",
-                "sha256:41184c416143defa34cc8eb9d070b0a5ba4f13a0fa96a709e20584638254b317",
-                "sha256:451e854cfae0febe723077bd0cf0a4302a5d84ff25f0bfece8f29206c7bed02e",
-                "sha256:4525b88c11906d5ab1b0ec1f290996c0020dd318af8b49acaa46f198b1ffc283",
-                "sha256:463247edcee4a5537841d5350bc87fe8e92d7dd0e8c71c995d2c6eecb8208278",
-                "sha256:4dbd80e453bd34bd003b16bd802fac70ad76bd463f81f0c518d1245b1c55e3d9",
-                "sha256:57b4012e04cc12b78590a334907e01b3a85efb2107df2b8733ff1ed05fce71de",
-                "sha256:5a8c863ceacae696aff37d1fd636121f1a512117652e5dfb86031c8d84836369",
-                "sha256:5acea83b801e98541619af398cc0109ff48016955cc0818f478ee9ef1c5c3dcb",
-                "sha256:642199e98af1bd2b6aeb8ecf726972d238c9877b0f6e8221ee5ab945ec8a2189",
-                "sha256:64bd6e1762cd7f0986a740fee4dff927b9ec2c5e4d9a28d056eb17d332158014",
-                "sha256:6d9fc9d812c81e6168b6d405bf00b8d6739a7f72ef22a9214c4241e0dc70b323",
-                "sha256:7079129b64cb78bdc8d611d1fd7e8002c0a2565da6a47c4df8062349fee90e3e",
-                "sha256:7dca87ca328f5ea7dafc907c5ec100d187911f94825f8700caac0b3f4c384b49",
-                "sha256:860fd59990c37c3ef913c3ae390b3929d005243acca1a86facb0773e2d8d9e50",
-                "sha256:8e6da5cffbbe571f93588f562ed130ea63ee206d12851b60819512dd3e1ba50d",
-                "sha256:8ec0636d3f7d68520afc6ac2dc4b8341ddb725039de042faf0e311599f54eb37",
-                "sha256:9491100aba630910489c1d0158034e1c9a6546f0b1340f716d522dc103788e39",
-                "sha256:97b974d3ba0fb4612b77ed35d7627490e8e3dff56ab41454d9e8b23448940576",
-                "sha256:995f9e8181723852ca458e22de5d9b7d3ba4da3f11cc1cb113f093b271d7965a",
-                "sha256:9dd47ff0cb2a656ad69c38da850df3454da88ee9a6fde0ba79acceee0e79daba",
-                "sha256:9fad446ad0bc886855ddf5909cbf8cb5d0faa637aaa6277fb4b19ade134ab3c7",
-                "sha256:a972cec723e0563aa0823ee2ab1df0cb196ed0778f173b381c871a03719d4826",
-                "sha256:ac9bea18d6d58a995fac1b2cb4488e17eceeac413af014b1dd26170b766d8467",
-                "sha256:b0531f0b0e07643eb089df4c509d30d72c9ef40defa53e41363eca8a8cc61495",
-                "sha256:b208cfd4f5fe34e1535c08983a1a6803fdbc7a1e86cf13dd0c61de0b51a0aadc",
-                "sha256:b3482cb7b3325faa5f6bc179649406058253d91ceda359c104dac0ad320e1391",
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