Removed all the java code as it is unnecessary

fda-authentication-service/.gitignore

-HELP.md
-target/
-!.mvn/wrapper/maven-wrapper.jar
-!**/src/main/**/target/
-!**/src/test/**/target/
-
-### Generated ###
-ready
-*.p12
-*.key
-*.pem
-
-### STS ###
-.apt_generated
-.classpath
-.factorypath
-.project
-.settings
-.springBeans
-.sts4-cache
-
-### IntelliJ IDEA ###
-.idea
-*.iws
-*.iml
-*.ipr
-
-### NetBeans ###
-/nbproject/private/
-/nbbuild/
-/dist/
-/nbdist/
-/.nb-gradle/
-build/
-!**/src/main/**/build/
-!**/src/test/**/build/
-
-### VS Code ###
-.vscode/

fda-authentication-service/.mvn/wrapper/MavenWrapperDownloader.java

-/*
- * Copyright 2007-present the original author or authors.
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- *      https://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-import java.net.*;
-import java.io.*;
-import java.nio.channels.*;
-import java.util.Properties;
-
-public class MavenWrapperDownloader {
-
-    private static final String WRAPPER_VERSION = "0.5.6";
-    /**
-     * Default URL to download the maven-wrapper.jar from, if no 'downloadUrl' is provided.
-     */
-    private static final String DEFAULT_DOWNLOAD_URL = "https://repo.maven.apache.org/maven2/io/takari/maven-wrapper/"
-            + WRAPPER_VERSION + "/maven-wrapper-" + WRAPPER_VERSION + ".jar";
-
-    /**
-     * Path to the maven-wrapper.properties file, which might contain a downloadUrl property to
-     * use instead of the default one.
-     */
-    private static final String MAVEN_WRAPPER_PROPERTIES_PATH =
-            ".mvn/wrapper/maven-wrapper.properties";
-
-    /**
-     * Path where the maven-wrapper.jar will be saved to.
-     */
-    private static final String MAVEN_WRAPPER_JAR_PATH =
-            ".mvn/wrapper/maven-wrapper.jar";
-
-    /**
-     * Name of the property which should be used to override the default download url for the wrapper.
-     */
-    private static final String PROPERTY_NAME_WRAPPER_URL = "wrapperUrl";
-
-    public static void main(String args[]) {
-        System.out.println("- Downloader started");
-        File baseDirectory = new File(args[0]);
-        System.out.println("- Using base directory: " + baseDirectory.getAbsolutePath());
-
-        // If the maven-wrapper.properties exists, read it and check if it contains a custom
-        // wrapperUrl parameter.
-        File mavenWrapperPropertyFile = new File(baseDirectory, MAVEN_WRAPPER_PROPERTIES_PATH);
-        String url = DEFAULT_DOWNLOAD_URL;
-        if (mavenWrapperPropertyFile.exists()) {
-            FileInputStream mavenWrapperPropertyFileInputStream = null;
-            try {
-                mavenWrapperPropertyFileInputStream = new FileInputStream(mavenWrapperPropertyFile);
-                Properties mavenWrapperProperties = new Properties();
-                mavenWrapperProperties.load(mavenWrapperPropertyFileInputStream);
-                url = mavenWrapperProperties.getProperty(PROPERTY_NAME_WRAPPER_URL, url);
-            } catch (IOException e) {
-                System.out.println("- ERROR loading '" + MAVEN_WRAPPER_PROPERTIES_PATH + "'");
-            } finally {
-                try {
-                    if (mavenWrapperPropertyFileInputStream != null) {
-                        mavenWrapperPropertyFileInputStream.close();
-                    }
-                } catch (IOException e) {
-                    // Ignore ...
-                }
-            }
-        }
-        System.out.println("- Downloading from: " + url);
-
-        File outputFile = new File(baseDirectory.getAbsolutePath(), MAVEN_WRAPPER_JAR_PATH);
-        if (!outputFile.getParentFile().exists()) {
-            if (!outputFile.getParentFile().mkdirs()) {
-                System.out.println(
-                        "- ERROR creating output directory '" + outputFile.getParentFile().getAbsolutePath() + "'");
-            }
-        }
-        System.out.println("- Downloading to: " + outputFile.getAbsolutePath());
-        try {
-            downloadFileFromURL(url, outputFile);
-            System.out.println("Done");
-            System.exit(0);
-        } catch (Throwable e) {
-            System.out.println("- Error downloading");
-            e.printStackTrace();
-            System.exit(1);
-        }
-    }
-
-    private static void downloadFileFromURL(String urlString, File destination) throws Exception {
-        if (System.getenv("MVNW_USERNAME") != null && System.getenv("MVNW_PASSWORD") != null) {
-            String username = System.getenv("MVNW_USERNAME");
-            char[] password = System.getenv("MVNW_PASSWORD").toCharArray();
-            Authenticator.setDefault(new Authenticator() {
-                @Override
-                protected PasswordAuthentication getPasswordAuthentication() {
-                    return new PasswordAuthentication(username, password);
-                }
-            });
-        }
-        URL website = new URL(urlString);
-        ReadableByteChannel rbc;
-        rbc = Channels.newChannel(website.openStream());
-        FileOutputStream fos = new FileOutputStream(destination);
-        fos.getChannel().transferFrom(rbc, 0, Long.MAX_VALUE);
-        fos.close();
-        rbc.close();
-    }
-
-}

fda-authentication-service/.mvn/wrapper/maven-wrapper.properties

-distributionUrl=https://repo.maven.apache.org/maven2/org/apache/maven/apache-maven/3.6.3/apache-maven-3.6.3-bin.zip
-wrapperUrl=https://repo.maven.apache.org/maven2/io/takari/maven-wrapper/0.5.6/maven-wrapper-0.5.6.jar

fda-authentication-service/Dockerfile

 ###### FIRST STAGE ######
-FROM fda-metadata-db:latest as dependency
-MAINTAINER Martin Weise <martin.weise@tuwien.ac.at>
-
-###### SECOND STAGE ######
 FROM keycloak/keycloak:21.0 as config
 
 # Enable health and metrics support
@@ -18,52 +14,16 @@ WORKDIR /opt/keycloak
 RUN keytool -genkeypair -storepass password -storetype PKCS12 -keyalg RSA -keysize 2048 -dname "CN=server" -alias server -ext "SAN:c=DNS:localhost,IP:127.0.0.1" -keystore conf/server.keystore
 RUN /opt/keycloak/bin/kc.sh build
 
-###### THIRD STAGE ######
-FROM maven:slim as build
-
-COPY ./pom.xml ./
-
-RUN mvn -fn -B dependency:go-offline > /dev/null
-
-COPY --from=dependency /root/.m2/repository/at/tuwien /root/.m2/repository/at/tuwien
-
-COPY ./rest-service ./rest-service
-COPY ./services ./services
-COPY ./report ./report
-
-# Make sure it compiles
-RUN mvn -q clean package -DskipTests
-
-###### FOURTH STAGE ######
+###### SECOND STAGE ######
 FROM keycloak/keycloak:21.0 as runtime
 COPY --from=config /opt/keycloak/ /opt/keycloak/
 
 USER root
 
-COPY ./service_ready /usr/bin
-COPY ./docker-entrypoint.sh /usr/bin
-COPY dbrepo-keycloak-realm.json /dbrepo-keycloak-realm.json
-RUN chmod +x /usr/bin/service_ready /usr/bin/docker-entrypoint.sh
+COPY dbrepo-realm.json /dbrepo-realm.json
 
-ENV METADATA_DB=fda
 ENV METADATA_USERNAME=root
 ENV METADATA_PASSWORD=dbrepo
-ENV BROKER_USERNAME=fda
-ENV BROKER_PASSWORD=fda
-ENV WEBSITE=http://example.com
-ENV GATEWAY_ENDPOINT=http://gateway-service:9095/api/broker
-ENV TOKEN_MAX=5
-ENV MAIL_FROM="Database Repository <noreply@example.com>"
-ENV MAIL_REPLY_TO="Somebody <somebody@example.com>"
-ENV MAIL_VERIFY=false
-ENV JWT_ISSUER=dbrepo
-ENV JWT_SECRET=secret
-ENV JWT_EXPIRATION=86400000
-ENV SMTP_HOST=""
-ENV SMTP_PORT=""
-ENV SMTP_USERNAME=""
-ENV SMTP_PASSWORD=""
-ENV LOG_LEVEL=debug
 
 ENV KC_DB=mariadb
 ENV KC_DB_URL=jdbc:mariadb://fda-metadata-db/keycloak
@@ -71,16 +31,12 @@ ENV KC_DB_USERNAME=${METADATA_USERNAME}
 ENV KC_DB_PASSWORD=${METADATA_PASSWORD}
 ENV KC_HOSTNAME=localhost
 
-ENV KEYCLOAK_IMPORT=/dbrepo-keycloak-realm.json
+ENV KEYCLOAK_IMPORT=/dbrepo-realm.json
 ENV KEYCLOAK_ADMIN=keycloak
 ENV KEYCLOAK_ADMIN_PASSWORD=keycloak
 
 VOLUME /tmp
 
-HEALTHCHECK --interval=10s --timeout=5s --retries=12 CMD service_ready
-
-COPY --from=build ./rest-service/target/rest-service-*.jar ./authentication-service.jar
-
 EXPOSE 9097
 
-ENTRYPOINT ["/usr/bin/docker-entrypoint.sh"]
+ENTRYPOINT ["/opt/keycloak/bin/kc.sh", "start"]

fda-authentication-service/README.md

-# Authentication Service
-
-Uses SAML2.0
-
-## Run
-
-The container needs the environment variable set with the Key Store password, put it in your `~/.bashrc`:
-
-```bash
-export KEY_STORE_PASSWORD=...
-```
-
-or for fish in your `~/.config/fish/config.fish`:
-
-```fish
-set KEY_STORE_PASSWORD "..."
-```
-
-## Key Store
-
-The key store is a secure container that contains the SSL/TLS certificate:
-
-1. Let's Encrypt private key for `dbrepo.ossdip.at` with alias `ssl`
-
-## Development
-
-Context metadata for IdP: `http://localhost:9097/saml/metadata`
-
-- The authentication is valid for 2 hours (default SAML2.0)
-- Login: `https://dbrepo.ossdip.at:9097/saml/login?local=true` -> success -> `https://dbrepo.ossdip.at/dashboard`
-- Logout: `https://dbrepo.ossdip.at:9097/saml/logout?local=true` -> success -> 
\ No newline at end of file

fda-authentication-service/docker-entrypoint.sh

-#!/bin/bash
-
-(java -Dlog4j2.formatMsgNoLookups=true -jar ./authentication-service.jar) &
-
-/opt/keycloak/bin/kc.sh start
\ No newline at end of file

fda-authentication-service/mvnw

-#!/bin/sh
-# ----------------------------------------------------------------------------
-# Licensed to the Apache Software Foundation (ASF) under one
-# or more contributor license agreements.  See the NOTICE file
-# distributed with this work for additional information
-# regarding copyright ownership.  The ASF licenses this file
-# to you under the Apache License, Version 2.0 (the
-# "License"); you may not use this file except in compliance
-# with the License.  You may obtain a copy of the License at
-#
-#    https://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing,
-# software distributed under the License is distributed on an
-# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-# KIND, either express or implied.  See the License for the
-# specific language governing permissions and limitations
-# under the License.
-# ----------------------------------------------------------------------------
-
-# ----------------------------------------------------------------------------
-# Maven Start Up Batch script
-#
-# Required ENV vars:
-# ------------------
-#   JAVA_HOME - location of a JDK home dir
-#
-# Optional ENV vars
-# -----------------
-#   M2_HOME - location of maven2's installed home dir
-#   MAVEN_OPTS - parameters passed to the Java VM when running Maven
-#     e.g. to debug Maven itself, use
-#       set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000
-#   MAVEN_SKIP_RC - flag to disable loading of mavenrc files
-# ----------------------------------------------------------------------------
-
-if [ -z "$MAVEN_SKIP_RC" ] ; then
-
-  if [ -f /etc/mavenrc ] ; then
-    . /etc/mavenrc
-  fi
-
-  if [ -f "$HOME/.mavenrc" ] ; then
-    . "$HOME/.mavenrc"
-  fi
-
-fi
-
-# OS specific support.  $var _must_ be set to either true or false.
-cygwin=false;
-darwin=false;
-mingw=false
-case "`uname`" in
-  CYGWIN*) cygwin=true ;;
-  MINGW*) mingw=true;;
-  Darwin*) darwin=true
-    # Use /usr/libexec/java_home if available, otherwise fall back to /Library/Java/Home
-    # See https://developer.apple.com/library/mac/qa/qa1170/_index.html
-    if [ -z "$JAVA_HOME" ]; then
-      if [ -x "/usr/libexec/java_home" ]; then
-        export JAVA_HOME="`/usr/libexec/java_home`"
-      else
-        export JAVA_HOME="/Library/Java/Home"
-      fi
-    fi
-    ;;
-esac
-
-if [ -z "$JAVA_HOME" ] ; then
-  if [ -r /etc/gentoo-release ] ; then
-    JAVA_HOME=`java-config --jre-home`
-  fi
-fi
-
-if [ -z "$M2_HOME" ] ; then
-  ## resolve links - $0 may be a link to maven's home
-  PRG="$0"
-
-  # need this for relative symlinks
-  while [ -h "$PRG" ] ; do
-    ls=`ls -ld "$PRG"`
-    link=`expr "$ls" : '.*-> \(.*\)$'`
-    if expr "$link" : '/.*' > /dev/null; then
-      PRG="$link"
-    else
-      PRG="`dirname "$PRG"`/$link"
-    fi
-  done
-
-  saveddir=`pwd`
-
-  M2_HOME=`dirname "$PRG"`/..
-
-  # make it fully qualified
-  M2_HOME=`cd "$M2_HOME" && pwd`
-
-  cd "$saveddir"
-  # echo Using m2 at $M2_HOME
-fi
-
-# For Cygwin, ensure paths are in UNIX format before anything is touched
-if $cygwin ; then
-  [ -n "$M2_HOME" ] &&
-    M2_HOME=`cygpath --unix "$M2_HOME"`
-  [ -n "$JAVA_HOME" ] &&
-    JAVA_HOME=`cygpath --unix "$JAVA_HOME"`
-  [ -n "$CLASSPATH" ] &&
-    CLASSPATH=`cygpath --path --unix "$CLASSPATH"`
-fi
-
-# For Mingw, ensure paths are in UNIX format before anything is touched
-if $mingw ; then
-  [ -n "$M2_HOME" ] &&
-    M2_HOME="`(cd "$M2_HOME"; pwd)`"
-  [ -n "$JAVA_HOME" ] &&
-    JAVA_HOME="`(cd "$JAVA_HOME"; pwd)`"
-fi
-
-if [ -z "$JAVA_HOME" ]; then
-  javaExecutable="`which javac`"
-  if [ -n "$javaExecutable" ] && ! [ "`expr \"$javaExecutable\" : '\([^ ]*\)'`" = "no" ]; then
-    # readlink(1) is not available as standard on Solaris 10.
-    readLink=`which readlink`
-    if [ ! `expr "$readLink" : '\([^ ]*\)'` = "no" ]; then
-      if $darwin ; then
-        javaHome="`dirname \"$javaExecutable\"`"
-        javaExecutable="`cd \"$javaHome\" && pwd -P`/javac"
-      else
-        javaExecutable="`readlink -f \"$javaExecutable\"`"
-      fi
-      javaHome="`dirname \"$javaExecutable\"`"
-      javaHome=`expr "$javaHome" : '\(.*\)/bin'`
-      JAVA_HOME="$javaHome"
-      export JAVA_HOME
-    fi
-  fi
-fi
-
-if [ -z "$JAVACMD" ] ; then
-  if [ -n "$JAVA_HOME"  ] ; then
-    if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
-      # IBM's JDK on AIX uses strange locations for the executables
-      JAVACMD="$JAVA_HOME/jre/sh/java"
-    else
-      JAVACMD="$JAVA_HOME/bin/java"
-    fi
-  else
-    JAVACMD="`which java`"
-  fi
-fi
-
-if [ ! -x "$JAVACMD" ] ; then
-  echo "Error: JAVA_HOME is not defined correctly." >&2
-  echo "  We cannot execute $JAVACMD" >&2
-  exit 1
-fi
-
-if [ -z "$JAVA_HOME" ] ; then
-  echo "Warning: JAVA_HOME environment variable is not set."
-fi
-
-CLASSWORLDS_LAUNCHER=org.codehaus.plexus.classworlds.launcher.Launcher
-
-# traverses directory structure from process work directory to filesystem root
-# first directory with .mvn subdirectory is considered project base directory
-find_maven_basedir() {
-
-  if [ -z "$1" ]
-  then
-    echo "Path not specified to find_maven_basedir"
-    return 1
-  fi
-
-  basedir="$1"
-  wdir="$1"
-  while [ "$wdir" != '/' ] ; do
-    if [ -d "$wdir"/.mvn ] ; then
-      basedir=$wdir
-      break
-    fi
-    # workaround for JBEAP-8937 (on Solaris 10/Sparc)
-    if [ -d "${wdir}" ]; then
-      wdir=`cd "$wdir/.."; pwd`
-    fi
-    # end of workaround
-  done
-  echo "${basedir}"
-}
-
-# concatenates all lines of a file
-concat_lines() {
-  if [ -f "$1" ]; then
-    echo "$(tr -s '\n' ' ' < "$1")"
-  fi
-}
-
-BASE_DIR=`find_maven_basedir "$(pwd)"`
-if [ -z "$BASE_DIR" ]; then
-  exit 1;
-fi
-
-##########################################################################################
-# Extension to allow automatically downloading the maven-wrapper.jar from Maven-central
-# This allows using the maven wrapper in projects that prohibit checking in binary data.
-##########################################################################################
-if [ -r "$BASE_DIR/.mvn/wrapper/maven-wrapper.jar" ]; then
-    if [ "$MVNW_VERBOSE" = true ]; then
-      echo "Found .mvn/wrapper/maven-wrapper.jar"
-    fi
-else
-    if [ "$MVNW_VERBOSE" = true ]; then
-      echo "Couldn't find .mvn/wrapper/maven-wrapper.jar, downloading it ..."
-    fi
-    if [ -n "$MVNW_REPOURL" ]; then
-      jarUrl="$MVNW_REPOURL/io/takari/maven-wrapper/0.5.6/maven-wrapper-0.5.6.jar"
-    else
-      jarUrl="https://repo.maven.apache.org/maven2/io/takari/maven-wrapper/0.5.6/maven-wrapper-0.5.6.jar"
-    fi
-    while IFS="=" read key value; do
-      case "$key" in (wrapperUrl) jarUrl="$value"; break ;;
-      esac
-    done < "$BASE_DIR/.mvn/wrapper/maven-wrapper.properties"
-    if [ "$MVNW_VERBOSE" = true ]; then
-      echo "Downloading from: $jarUrl"
-    fi
-    wrapperJarPath="$BASE_DIR/.mvn/wrapper/maven-wrapper.jar"
-    if $cygwin; then
-      wrapperJarPath=`cygpath --path --windows "$wrapperJarPath"`
-    fi
-
-    if command -v wget > /dev/null; then
-        if [ "$MVNW_VERBOSE" = true ]; then
-          echo "Found wget ... using wget"
-        fi
-        if [ -z "$MVNW_USERNAME" ] || [ -z "$MVNW_PASSWORD" ]; then
-            wget "$jarUrl" -O "$wrapperJarPath"
-        else
-            wget --http-user=$MVNW_USERNAME --http-password=$MVNW_PASSWORD "$jarUrl" -O "$wrapperJarPath"
-        fi
-    elif command -v curl > /dev/null; then
-        if [ "$MVNW_VERBOSE" = true ]; then
-          echo "Found curl ... using curl"
-        fi
-        if [ -z "$MVNW_USERNAME" ] || [ -z "$MVNW_PASSWORD" ]; then
-            curl -o "$wrapperJarPath" "$jarUrl" -f
-        else
-            curl --user $MVNW_USERNAME:$MVNW_PASSWORD -o "$wrapperJarPath" "$jarUrl" -f
-        fi
-
-    else
-        if [ "$MVNW_VERBOSE" = true ]; then
-          echo "Falling back to using Java to download"
-        fi
-        javaClass="$BASE_DIR/.mvn/wrapper/MavenWrapperDownloader.java"
-        # For Cygwin, switch paths to Windows format before running javac
-        if $cygwin; then
-          javaClass=`cygpath --path --windows "$javaClass"`
-        fi
-        if [ -e "$javaClass" ]; then
-            if [ ! -e "$BASE_DIR/.mvn/wrapper/MavenWrapperDownloader.class" ]; then
-                if [ "$MVNW_VERBOSE" = true ]; then
-                  echo " - Compiling MavenWrapperDownloader.java ..."
-                fi
-                # Compiling the Java class
-                ("$JAVA_HOME/bin/javac" "$javaClass")
-            fi
-            if [ -e "$BASE_DIR/.mvn/wrapper/MavenWrapperDownloader.class" ]; then
-                # Running the downloader
-                if [ "$MVNW_VERBOSE" = true ]; then
-                  echo " - Running MavenWrapperDownloader.java ..."
-                fi
-                ("$JAVA_HOME/bin/java" -cp .mvn/wrapper MavenWrapperDownloader "$MAVEN_PROJECTBASEDIR")
-            fi
-        fi
-    fi
-fi
-##########################################################################################
-# End of extension
-##########################################################################################
-
-export MAVEN_PROJECTBASEDIR=${MAVEN_BASEDIR:-"$BASE_DIR"}
-if [ "$MVNW_VERBOSE" = true ]; then
-  echo $MAVEN_PROJECTBASEDIR
-fi
-MAVEN_OPTS="$(concat_lines "$MAVEN_PROJECTBASEDIR/.mvn/jvm.config") $MAVEN_OPTS"
-
-# For Cygwin, switch paths to Windows format before running java
-if $cygwin; then
-  [ -n "$M2_HOME" ] &&
-    M2_HOME=`cygpath --path --windows "$M2_HOME"`
-  [ -n "$JAVA_HOME" ] &&
-    JAVA_HOME=`cygpath --path --windows "$JAVA_HOME"`
-  [ -n "$CLASSPATH" ] &&
-    CLASSPATH=`cygpath --path --windows "$CLASSPATH"`
-  [ -n "$MAVEN_PROJECTBASEDIR" ] &&
-    MAVEN_PROJECTBASEDIR=`cygpath --path --windows "$MAVEN_PROJECTBASEDIR"`
-fi
-
-# Provide a "standardized" way to retrieve the CLI args that will
-# work with both Windows and non-Windows executions.
-MAVEN_CMD_LINE_ARGS="$MAVEN_CONFIG $@"
-export MAVEN_CMD_LINE_ARGS
-
-WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain
-
-exec "$JAVACMD" \
-  $MAVEN_OPTS \
-  -classpath "$MAVEN_PROJECTBASEDIR/.mvn/wrapper/maven-wrapper.jar" \
-  "-Dmaven.home=${M2_HOME}" "-Dmaven.multiModuleProjectDirectory=${MAVEN_PROJECTBASEDIR}" \
-  ${WRAPPER_LAUNCHER} $MAVEN_CONFIG "$@"

fda-authentication-service/mvnw.cmd

-@REM ----------------------------------------------------------------------------
-@REM Licensed to the Apache Software Foundation (ASF) under one
-@REM or more contributor license agreements.  See the NOTICE file
-@REM distributed with this work for additional information
-@REM regarding copyright ownership.  The ASF licenses this file
-@REM to you under the Apache License, Version 2.0 (the
-@REM "License"); you may not use this file except in compliance
-@REM with the License.  You may obtain a copy of the License at
-@REM
-@REM    https://www.apache.org/licenses/LICENSE-2.0
-@REM
-@REM Unless required by applicable law or agreed to in writing,
-@REM software distributed under the License is distributed on an
-@REM "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
-@REM KIND, either express or implied.  See the License for the
-@REM specific language governing permissions and limitations
-@REM under the License.
-@REM ----------------------------------------------------------------------------
-
-@REM ----------------------------------------------------------------------------
-@REM Maven Start Up Batch script
-@REM
-@REM Required ENV vars:
-@REM JAVA_HOME - location of a JDK home dir
-@REM
-@REM Optional ENV vars
-@REM M2_HOME - location of maven2's installed home dir
-@REM MAVEN_BATCH_ECHO - set to 'on' to enable the echoing of the batch commands
-@REM MAVEN_BATCH_PAUSE - set to 'on' to wait for a keystroke before ending
-@REM MAVEN_OPTS - parameters passed to the Java VM when running Maven
-@REM     e.g. to debug Maven itself, use
-@REM set MAVEN_OPTS=-Xdebug -Xrunjdwp:transport=dt_socket,server=y,suspend=y,address=8000
-@REM MAVEN_SKIP_RC - flag to disable loading of mavenrc files
-@REM ----------------------------------------------------------------------------
-
-@REM Begin all REM lines with '@' in case MAVEN_BATCH_ECHO is 'on'
-@echo off
-@REM set title of command window
-title %0
-@REM enable echoing by setting MAVEN_BATCH_ECHO to 'on'
-@if "%MAVEN_BATCH_ECHO%" == "on"  echo %MAVEN_BATCH_ECHO%
-
-@REM set %HOME% to equivalent of $HOME
-if "%HOME%" == "" (set "HOME=%HOMEDRIVE%%HOMEPATH%")
-
-@REM Execute a user defined script before this one
-if not "%MAVEN_SKIP_RC%" == "" goto skipRcPre
-@REM check for pre script, once with legacy .bat ending and once with .cmd ending
-if exist "%HOME%\mavenrc_pre.bat" call "%HOME%\mavenrc_pre.bat"
-if exist "%HOME%\mavenrc_pre.cmd" call "%HOME%\mavenrc_pre.cmd"
-:skipRcPre
-
-@setlocal
-
-set ERROR_CODE=0
-
-@REM To isolate internal variables from possible post scripts, we use another setlocal
-@setlocal
-
-@REM ==== START VALIDATION ====
-if not "%JAVA_HOME%" == "" goto OkJHome
-
-echo.
-echo Error: JAVA_HOME not found in your environment. >&2
-echo Please set the JAVA_HOME variable in your environment to match the >&2
-echo location of your Java installation. >&2
-echo.
-goto error
-
-:OkJHome
-if exist "%JAVA_HOME%\bin\java.exe" goto init
-
-echo.
-echo Error: JAVA_HOME is set to an invalid directory. >&2
-echo JAVA_HOME = "%JAVA_HOME%" >&2
-echo Please set the JAVA_HOME variable in your environment to match the >&2
-echo location of your Java installation. >&2
-echo.
-goto error
-
-@REM ==== END VALIDATION ====
-
-:init
-
-@REM Find the project base dir, i.e. the directory that contains the folder ".mvn".
-@REM Fallback to current working directory if not found.
-
-set MAVEN_PROJECTBASEDIR=%MAVEN_BASEDIR%
-IF NOT "%MAVEN_PROJECTBASEDIR%"=="" goto endDetectBaseDir
-
-set EXEC_DIR=%CD%
-set WDIR=%EXEC_DIR%
-:findBaseDir
-IF EXIST "%WDIR%"\.mvn goto baseDirFound
-cd ..
-IF "%WDIR%"=="%CD%" goto baseDirNotFound
-set WDIR=%CD%
-goto findBaseDir
-
-:baseDirFound
-set MAVEN_PROJECTBASEDIR=%WDIR%
-cd "%EXEC_DIR%"
-goto endDetectBaseDir
-
-:baseDirNotFound
-set MAVEN_PROJECTBASEDIR=%EXEC_DIR%
-cd "%EXEC_DIR%"
-
-:endDetectBaseDir
-
-IF NOT EXIST "%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config" goto endReadAdditionalConfig
-
-@setlocal EnableExtensions EnableDelayedExpansion
-for /F "usebackq delims=" %%a in ("%MAVEN_PROJECTBASEDIR%\.mvn\jvm.config") do set JVM_CONFIG_MAVEN_PROPS=!JVM_CONFIG_MAVEN_PROPS! %%a
-@endlocal & set JVM_CONFIG_MAVEN_PROPS=%JVM_CONFIG_MAVEN_PROPS%
-
-:endReadAdditionalConfig
-
-SET MAVEN_JAVA_EXE="%JAVA_HOME%\bin\java.exe"
-set WRAPPER_JAR="%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.jar"
-set WRAPPER_LAUNCHER=org.apache.maven.wrapper.MavenWrapperMain
-
-set DOWNLOAD_URL="https://repo.maven.apache.org/maven2/io/takari/maven-wrapper/0.5.6/maven-wrapper-0.5.6.jar"
-
-FOR /F "tokens=1,2 delims==" %%A IN ("%MAVEN_PROJECTBASEDIR%\.mvn\wrapper\maven-wrapper.properties") DO (
-    IF "%%A"=="wrapperUrl" SET DOWNLOAD_URL=%%B
-)
-
-@REM Extension to allow automatically downloading the maven-wrapper.jar from Maven-central
-@REM This allows using the maven wrapper in projects that prohibit checking in binary data.
-if exist %WRAPPER_JAR% (
-    if "%MVNW_VERBOSE%" == "true" (
-        echo Found %WRAPPER_JAR%
-    )
-) else (
-    if not "%MVNW_REPOURL%" == "" (
-        SET DOWNLOAD_URL="%MVNW_REPOURL%/io/takari/maven-wrapper/0.5.6/maven-wrapper-0.5.6.jar"
-    )
-    if "%MVNW_VERBOSE%" == "true" (
-        echo Couldn't find %WRAPPER_JAR%, downloading it ...
-        echo Downloading from: %DOWNLOAD_URL%
-    )
-
-    powershell -Command "&{"^
-		"$webclient = new-object System.Net.WebClient;"^
-		"if (-not ([string]::IsNullOrEmpty('%MVNW_USERNAME%') -and [string]::IsNullOrEmpty('%MVNW_PASSWORD%'))) {"^
-		"$webclient.Credentials = new-object System.Net.NetworkCredential('%MVNW_USERNAME%', '%MVNW_PASSWORD%');"^
-		"}"^
-		"[Net.ServicePointManager]::SecurityProtocol = [Net.SecurityProtocolType]::Tls12; $webclient.DownloadFile('%DOWNLOAD_URL%', '%WRAPPER_JAR%')"^
-		"}"
-    if "%MVNW_VERBOSE%" == "true" (
-        echo Finished downloading %WRAPPER_JAR%
-    )
-)
-@REM End of extension
-
-@REM Provide a "standardized" way to retrieve the CLI args that will
-@REM work with both Windows and non-Windows executions.
-set MAVEN_CMD_LINE_ARGS=%*
-
-%MAVEN_JAVA_EXE% %JVM_CONFIG_MAVEN_PROPS% %MAVEN_OPTS% %MAVEN_DEBUG_OPTS% -classpath %WRAPPER_JAR% "-Dmaven.multiModuleProjectDirectory=%MAVEN_PROJECTBASEDIR%" %WRAPPER_LAUNCHER% %MAVEN_CONFIG% %*
-if ERRORLEVEL 1 goto error
-goto end
-
-:error
-set ERROR_CODE=1
-
-:end
-@endlocal & set ERROR_CODE=%ERROR_CODE%
-
-if not "%MAVEN_SKIP_RC%" == "" goto skipRcPost
-@REM check for post script, once with legacy .bat ending and once with .cmd ending
-if exist "%HOME%\mavenrc_post.bat" call "%HOME%\mavenrc_post.bat"
-if exist "%HOME%\mavenrc_post.cmd" call "%HOME%\mavenrc_post.cmd"
-:skipRcPost
-
-@REM pause the script if MAVEN_BATCH_PAUSE is set to 'on'
-if "%MAVEN_BATCH_PAUSE%" == "on" pause
-
-if "%MAVEN_TERMINATE_CMD%" == "on" exit %ERROR_CODE%
-
-exit /B %ERROR_CODE%

fda-authentication-service/pom.xml

-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
-    <modelVersion>4.0.0</modelVersion>
-    <parent>
-        <groupId>org.springframework.boot</groupId>
-        <artifactId>spring-boot-starter-parent</artifactId>
-        <version>2.3.10.RELEASE</version>
-    </parent>
-
-    <groupId>at.tuwien</groupId>
-    <artifactId>fda-authentication-service</artifactId>
-    <version>1.1.0-alpha</version>
-    <name>fda-authentication-service</name>
-    <description>Demo project for Spring Boot</description>
-
-    <packaging>pom</packaging>
-    <modules>
-        <module>rest-service</module>
-        <module>services</module>
-        <module>report</module>
-    </modules>
-
-    <properties>
-        <java.version>11</java.version>
-        <spring-cloud.version>3.0.1</spring-cloud.version>
-        <mapstruct.version>1.4.2.Final</mapstruct.version>
-        <swagger.version>2.1.7</swagger.version>
-        <springfox.version>3.0.0</springfox.version>
-        <jacoco.version>0.8.7</jacoco.version>
-        <spring-saml.version>1.0.10.RELEASE</spring-saml.version>
-        <javax-rs.version>2.1.1</javax-rs.version>
-        <javax-mail.version>1.4.7</javax-mail.version>
-        <jwt.version>3.18.3</jwt.version>
-        <docker.version>3.2.7</docker.version>
-    </properties>
-
-    <dependencies>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-validation</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-web</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-security</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.cloud</groupId>
-            <artifactId>spring-cloud-starter-bootstrap</artifactId>
-            <version>${spring-cloud.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-mail</artifactId>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-actuator</artifactId>
-        </dependency>
-        <!-- Monitoring -->
-        <dependency>
-            <groupId>io.micrometer</groupId>
-            <artifactId>micrometer-registry-prometheus</artifactId>
-            <scope>runtime</scope>
-        </dependency>
-        <!-- Email Template -->
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-thymeleaf</artifactId>
-        </dependency>
-        <!-- Entity and API -->
-        <dependency>
-            <groupId>at.tuwien</groupId>
-            <artifactId>fda-metadata-db-api</artifactId>
-            <version>${project.version}</version>
-            <scope>compile</scope>
-        </dependency>
-        <dependency>
-            <groupId>at.tuwien</groupId>
-            <artifactId>fda-metadata-db-entites</artifactId>
-            <version>${project.version}</version>
-            <scope>compile</scope>
-        </dependency>
-        <!-- Testing -->
-        <dependency>
-            <groupId>javax.ws.rs</groupId>
-            <artifactId>javax.ws.rs-api</artifactId>
-            <version>${javax-rs.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.security</groupId>
-            <artifactId>spring-security-test</artifactId>
-            <scope>test</scope>
-        </dependency>
-        <dependency>
-            <groupId>org.springframework.boot</groupId>
-            <artifactId>spring-boot-starter-test</artifactId>
-            <scope>test</scope>
-            <exclusions>
-                <exclusion>
-                    <groupId>org.junit.jupiter</groupId>
-                    <artifactId>junit-vintage-engine</artifactId>
-                </exclusion>
-            </exclusions>
-        </dependency>
-        <dependency>
-            <groupId>org.jacoco</groupId>
-            <artifactId>jacoco-maven-plugin</artifactId>
-            <version>${jacoco.version}</version>
-        </dependency>
-        <!-- DataSource -->
-        <dependency>
-            <groupId>com.h2database</groupId>
-            <artifactId>h2</artifactId>
-            <scope>runtime</scope>
-        </dependency>
-        <dependency>
-            <groupId>org.mariadb.jdbc</groupId>
-            <artifactId>mariadb-java-client</artifactId>
-            <version>${mariadb.version}</version>
-        </dependency>
-        <!-- IDE -->
-        <dependency>
-            <groupId>org.projectlombok</groupId>
-            <artifactId>lombok</artifactId>
-        </dependency>
-        <!-- Mapping -->
-        <dependency>
-            <groupId>org.mapstruct</groupId>
-            <artifactId>mapstruct-processor</artifactId>
-            <version>${mapstruct.version}</version>
-            <optional>true</optional><!-- IntelliJ -->
-        </dependency>
-        <dependency>
-            <groupId>org.mapstruct</groupId>
-            <artifactId>mapstruct</artifactId>
-            <version>${mapstruct.version}</version>
-        </dependency>
-        <!-- AMPQ -->
-        <dependency>
-            <groupId>com.rabbitmq</groupId>
-            <artifactId>amqp-client</artifactId>
-            <version>${rabbit-amqp-client.version}</version>
-        </dependency>
-        <!-- JWT -->
-        <dependency>
-            <groupId>com.auth0</groupId>
-            <artifactId>java-jwt</artifactId>
-            <version>${jwt.version}</version>
-        </dependency>
-        <!-- Docker -->
-        <dependency>
-            <groupId>com.github.docker-java</groupId>
-            <artifactId>docker-java</artifactId>
-            <version>${docker.version}</version>
-            <scope>test</scope>
-            <exclusions>
-                <exclusion>
-                    <groupId>javax.ws.rs</groupId>
-                    <artifactId>jsr311-api</artifactId>
-                </exclusion>
-            </exclusions>
-        </dependency>
-        <dependency>
-            <groupId>com.github.docker-java</groupId>
-            <artifactId>docker-java-transport-httpclient5</artifactId>
-            <version>${docker.version}</version>
-            <scope>test</scope>
-        </dependency>
-    </dependencies>
-
-    <build>
-        <resources>
-            <resource>
-                <directory>${basedir}/src/main/resources</directory>
-                <filtering>true</filtering>
-                <includes>
-                    <include>**/application*.yml</include>
-                    <include>**/*-mail.txt</include>
-                </includes>
-            </resource>
-        </resources>
-        <plugins>
-            <plugin>
-                <groupId>org.jacoco</groupId>
-                <artifactId>jacoco-maven-plugin</artifactId>
-                <version>${jacoco.version}</version>
-                <configuration>
-                    <excludes>
-                        <exclude>at/tuwien/utils/**/*</exclude>
-                        <exclude>at/tuwien/seeder/**/*</exclude>
-                        <exclude>at/tuwien/mapper/**/*</exclude>
-                        <exclude>at/tuwien/exception/**/*</exclude>
-                        <exclude>at/tuwien/config/**/*</exclude>
-                        <exclude>at/tuwien/auth/MariaDbPassword.class</exclude>
-                        <exclude>**/FdaAuthenticationServiceApplication.class</exclude>
-                        <exclude>**/ApiExceptionHandler.class</exclude>
-                    </excludes>
-                </configuration>
-                <executions>
-                    <execution>
-                        <id>default-prepare-agent</id>
-                        <goals>
-                            <goal>prepare-agent</goal>
-                        </goals>
-                    </execution>
-                    <execution>
-                        <id>report</id>
-                        <phase>verify</phase>
-                        <goals>
-                            <goal>report</goal>
-                        </goals>
-                    </execution>
-                </executions>
-            </plugin>
-        </plugins>
-    </build>
-
-</project>

fda-authentication-service/report/pom.xml

-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0"
-         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-    <modelVersion>4.0.0</modelVersion>
-    <parent>
-        <groupId>at.tuwien</groupId>
-        <artifactId>fda-authentication-service</artifactId>
-        <version>1.1.0-alpha</version>
-    </parent>
-
-    <artifactId>api</artifactId>
-    <version>1.1.0-alpha</version>
-    <name>fda-authentication-service-api</name>
-    <description>
-        This module is only intended for the pipeline coverage report. See the detailed report in the
-        respective modules
-    </description>
-
-    <properties>
-        <jacoco.version>0.8.7</jacoco.version>
-    </properties>
-
-    <dependencies>
-        <dependency>
-            <groupId>at.tuwien</groupId>
-            <artifactId>rest-service</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-        <dependency>
-            <groupId>at.tuwien</groupId>
-            <artifactId>services</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-    </dependencies>
-
-    <build>
-        <plugins>
-            <plugin>
-                <groupId>org.jacoco</groupId>
-                <artifactId>jacoco-maven-plugin</artifactId>
-                <version>${jacoco.version}</version>
-                <executions>
-                    <execution>
-                        <id>report-aggregate</id>
-                        <phase>verify</phase>
-                        <goals>
-                            <goal>report-aggregate</goal>
-                        </goals>
-                    </execution>
-                </executions>
-            </plugin>
-        </plugins>
-    </build>
-
-</project>
\ No newline at end of file

fda-authentication-service/rest-service/pom.xml

-<?xml version="1.0" encoding="UTF-8"?>
-<project xmlns="http://maven.apache.org/POM/4.0.0"
-         xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
-         xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 http://maven.apache.org/xsd/maven-4.0.0.xsd">
-    <modelVersion>4.0.0</modelVersion>
-    <parent>
-        <groupId>at.tuwien</groupId>
-        <artifactId>fda-authentication-service</artifactId>
-        <version>1.1.0-alpha</version>
-    </parent>
-
-    <artifactId>rest-service</artifactId>
-    <version>1.1.0-alpha</version>
-    <name>fda-authentication-service-rest-service</name>
-
-    <properties>
-        <jacoco.version>0.8.7</jacoco.version>
-    </properties>
-
-    <dependencies>
-        <dependency>
-            <groupId>at.tuwien</groupId>
-            <artifactId>services</artifactId>
-            <version>${project.version}</version>
-        </dependency>
-    </dependencies>
-
-    <build>
-        <plugins>
-            <plugin>
-                <groupId>org.springframework.boot</groupId>
-                <artifactId>spring-boot-maven-plugin</artifactId>
-                <executions>
-                    <execution>
-                        <goals>
-                            <goal>repackage</goal><!-- to make it exuteable with $ java -jar ./app.jar -->
-                        </goals>
-                    </execution>
-                </executions>
-            </plugin>
-        </plugins>
-    </build>
-
-</project>
\ No newline at end of file

fda-authentication-service/rest-service/src/main/java/at/tuwien/FdaAuthenticationServiceApplication.java

-package at.tuwien;
-
-import org.springframework.boot.SpringApplication;
-import org.springframework.boot.autoconfigure.SpringBootApplication;
-import org.springframework.data.jpa.repository.config.EnableJpaAuditing;
-import org.springframework.security.config.annotation.web.configuration.EnableWebSecurity;
-
-@EnableWebSecurity
-@SpringBootApplication
-@EnableJpaAuditing
-public class FdaAuthenticationServiceApplication {
-
-    public static void main(String[] args) {
-        SpringApplication.run(FdaAuthenticationServiceApplication.class, args);
-    }
-
-}

fda-authentication-service/rest-service/src/main/java/at/tuwien/config/ReadyConfig.java

-package at.tuwien.config;
-
-import com.google.common.io.Files;
-import lombok.extern.log4j.Log4j2;
-import org.springframework.beans.factory.annotation.Value;
-import org.springframework.boot.context.event.ApplicationReadyEvent;
-import org.springframework.context.annotation.Configuration;
-import org.springframework.context.event.EventListener;
-
-import java.io.File;
-import java.io.IOException;
-
-@Log4j2
-@Configuration
-public class ReadyConfig {
-
-    @Value("${fda.ready.path}")
-    private String readyPath;
-
-    @EventListener(ApplicationReadyEvent.class)
-    public void init() throws IOException {
-        Files.touch(new File(readyPath));
-    }
-
-}

fda-authentication-service/rest-service/src/main/java/at/tuwien/config/SwaggerConfig.java

-package at.tuwien.config;
-
-import io.swagger.v3.oas.models.ExternalDocumentation;
-import io.swagger.v3.oas.models.OpenAPI;
-import io.swagger.v3.oas.models.info.Contact;
-import io.swagger.v3.oas.models.info.Info;
-import io.swagger.v3.oas.models.info.License;
-import org.springdoc.core.GroupedOpenApi;
-import org.springframework.beans.factory.annotation.Value;
-import org.springframework.context.annotation.Bean;
-import org.springframework.context.annotation.Configuration;
-
-@Configuration
-public class SwaggerConfig {
-
-    @Value("${app.version:unknown}")
-    private String version;
-
-    @Bean
-    public OpenAPI springShopOpenAPI() {
-        return new OpenAPI()
-                .info(new Info()
-                        .title("Database Repository Authentication Service API")
-                        .contact(new Contact()
-                                .name("Prof. Andreas Rauber")
-                                .email("andreas.rauber@tuwien.ac.at"))
-                        .description("Service that manages the authentication")
-                        .version(version)
-                        .license(new License()
-                                .name("Apache 2.0")
-                                .url("https://www.apache.org/licenses/LICENSE-2.0")))
-                .externalDocs(new ExternalDocumentation()
-                        .description("Wiki Documentation")
-                        .url("https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/wikis"));
-    }
-
-    @Bean
-    public GroupedOpenApi publicApi() {
-        return GroupedOpenApi.builder()
-                .group("container-service")
-                .pathsToMatch("/api/**")
-                .build();
-    }
-
-}

fda-authentication-service/rest-service/src/main/java/at/tuwien/endpoints/AuthenticationEndpoint.java

-package at.tuwien.endpoints;
-
-import at.tuwien.api.auth.JwtResponseDto;
-import at.tuwien.api.auth.LoginRequestDto;
-import at.tuwien.api.user.UserDto;
-import at.tuwien.entities.user.User;
-import at.tuwien.exception.OrcidMalformedException;
-import at.tuwien.exception.TokenRevokedException;
-import at.tuwien.exception.UserEmailNotVerifiedException;
-import at.tuwien.exception.UserNotFoundException;
-import at.tuwien.mapper.UserMapper;
-import at.tuwien.service.AuthenticationService;
-import at.tuwien.service.UserService;
-import io.micrometer.core.annotation.Timed;
-import io.swagger.v3.oas.annotations.Operation;
-import io.swagger.v3.oas.annotations.security.SecurityRequirement;
-import lombok.extern.log4j.Log4j2;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.http.HttpHeaders;
-import org.springframework.http.ResponseEntity;
-import org.springframework.security.access.prepost.PreAuthorize;
-import org.springframework.transaction.annotation.Transactional;
-import org.springframework.web.bind.annotation.*;
-
-import javax.validation.Valid;
-import javax.validation.constraints.NotNull;
-import java.security.Principal;
-
-@Log4j2
-@RestController
-@CrossOrigin(origins = "*")
-@ControllerAdvice
-@RequestMapping("/api/auth")
-public class AuthenticationEndpoint {
-
-    private final UserMapper userMapper;
-    private final UserService userService;
-    private final AuthenticationService authenticationService;
-
-    @Autowired
-    public AuthenticationEndpoint(UserMapper userMapper, UserService userService,
-                                  AuthenticationService authenticationService) {
-        this.userMapper = userMapper;
-        this.userService = userService;
-        this.authenticationService = authenticationService;
-    }
-
-    @PostMapping
-    @Timed(value = "auth.create", description = "Time needed to create an authentication token")
-    @Operation(summary = "Create authentication token")
-    public ResponseEntity<JwtResponseDto> authenticateUser(@Valid @RequestBody LoginRequestDto data)
-            throws UserNotFoundException, UserEmailNotVerifiedException {
-        log.debug("endpoint create authentication token, data={}", data);
-        final JwtResponseDto response = authenticationService.authenticate(data);
-        return ResponseEntity.accepted()
-                .body(response);
-    }
-
-    @PutMapping
-    @Transactional
-    @Timed(value = "auth.validate", description = "Time needed to validate an authentication token")
-    @Operation(summary = "Validate authentication token", security = @SecurityRequirement(name = "bearerAuth"))
-    public ResponseEntity<UserDto> authenticateUser(@NotNull Principal principal,
-                                                    @RequestHeader(HttpHeaders.AUTHORIZATION) String authorization)
-            throws UserNotFoundException, OrcidMalformedException, TokenRevokedException {
-        log.debug("endpoint validate authentication token, principal={}, authorization={}", principal, authorization);
-        final User user = userService.findByUsername(principal.getName());
-        log.trace("authentication for principal name {} retrieved user {}", principal.getName(), user);
-        final UserDto dto = userMapper.userToUserDto(user);
-        log.trace("mapped user to dto {}", dto);
-        authenticationService.verifyToken(authorization);
-        return ResponseEntity.accepted()
-                .body(dto);
-    }
-
-    @PostMapping("/renew")
-    @Timed(value = "auth.renew", description = "Time needed to renew an authentication token")
-    @PreAuthorize("isAuthenticated()")
-    @Operation(summary = "Renew authentication token", security = @SecurityRequirement(name = "bearerAuth"))
-    public ResponseEntity<JwtResponseDto> reAuthenticateUser(Principal principal) {
-        log.debug("endpoint renew authentication token, principal={}", principal);
-        final JwtResponseDto response = authenticationService.renew(principal);
-        return ResponseEntity.ok()
-                .body(response);
-    }
-
-}
\ No newline at end of file

fda-authentication-service/rest-service/src/main/java/at/tuwien/endpoints/TimeSecretEndpoint.java

-package at.tuwien.endpoints;
-
-import at.tuwien.api.user.UserForgotDto;
-import at.tuwien.config.SecurityConfig;
-import at.tuwien.entities.user.TimeSecret;
-import at.tuwien.entities.user.User;
-import at.tuwien.exception.*;
-import at.tuwien.service.MailService;
-import at.tuwien.service.TimeSecretService;
-import at.tuwien.service.UserService;
-import io.micrometer.core.annotation.Timed;
-import io.swagger.v3.oas.annotations.Operation;
-import lombok.extern.log4j.Log4j2;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.http.HttpStatus;
-import org.springframework.http.ResponseEntity;
-import org.springframework.transaction.annotation.Transactional;
-import org.springframework.web.bind.annotation.*;
-import org.thymeleaf.context.Context;
-
-import javax.servlet.http.HttpServletResponse;
-import javax.validation.Valid;
-import javax.validation.constraints.NotNull;
-import javax.validation.constraints.Null;
-import java.security.Principal;
-
-@Log4j2
-@RestController
-@CrossOrigin(origins = "*")
-@ControllerAdvice
-@RequestMapping("/api/user/secret")
-public class TimeSecretEndpoint {
-
-    private final UserService userService;
-    private final MailService mailService;
-    private final TimeSecretService tokenService;
-    private final SecurityConfig securityConfig;
-
-    @Autowired
-    public TimeSecretEndpoint(UserService userService, MailService mailService, TimeSecretService tokenService,
-                              SecurityConfig securityConfig) {
-        this.userService = userService;
-        this.mailService = mailService;
-        this.tokenService = tokenService;
-        this.securityConfig = securityConfig;
-    }
-
-    @GetMapping
-    @Transactional
-    @Timed(value = "email.verify", description = "Time needed to verify the user email")
-    @Operation(summary = "verify user email")
-    public void verifyEmail(@NotNull @RequestParam String token,
-                            @NotNull HttpServletResponse httpServletResponse,
-                            @Null Principal principal) throws SecretInvalidException, NotAllowedException {
-        log.debug("endpoint verify user email, token={}, principal={}", token, principal);
-        if (principal != null) {
-            log.error("Failed to verify e-mail while being logged-in");
-            throw new NotAllowedException("Failed to verify e-mail while being logged-in");
-        }
-        tokenService.invalidate(token);
-        httpServletResponse.setHeader("Location", securityConfig.getWebsite() + "/login?email_verified");
-        log.debug("redirect user to website {}", securityConfig.getWebsite() + "/login?email_verified");
-        httpServletResponse.setStatus(302);
-    }
-
-    @PostMapping("/resend")
-    @Transactional
-    @Timed(value = "email.resend", description = "Time needed to re-send the user email verification")
-    @Operation(summary = "resend user token")
-    public ResponseEntity<?> resend(@NotNull @Valid @RequestBody UserForgotDto data,
-                                    @Null Principal principal) throws UserNotFoundException, UserEmailFailedException,
-            UserEmailAlreadyVerifiedException, NotAllowedException {
-        log.debug("endpoint resend user token, data={}, principal={}", data, principal);
-        if (principal != null) {
-            log.error("Failed to verify e-mail while being logged-in");
-            throw new NotAllowedException("Failed to verify e-mail while being logged-in");
-        }
-        final User user = userService.findByUsernameOrEmail(data.getUsername(), data.getEmail());
-        if (user.getEmailVerified()) {
-            log.error("Failed to resend user token for email {}, already verified", user.getEmail());
-            log.trace("failed to resend user token for user {}", user);
-            throw new UserEmailAlreadyVerifiedException("Failed to resend user token, email already verified");
-        }
-        final TimeSecret token = tokenService.create(user);
-        final Context context = new Context();
-        context.setVariable("username", user.getUsername());
-        context.setVariable("token", token.getToken());
-        mailService.send(user, "E-Mail Verification", "mail-verify-email.txt", context);
-        return ResponseEntity.status(HttpStatus.OK)
-                .build();
-    }
-
-}
\ No newline at end of file

fda-authentication-service/rest-service/src/main/java/at/tuwien/endpoints/TokenEndpoint.java

-package at.tuwien.endpoints;
-
-import at.tuwien.api.auth.TokenBriefDto;
-import at.tuwien.api.auth.TokenDto;
-import at.tuwien.config.AuthenticationConfig;
-import at.tuwien.entities.user.Token;
-import at.tuwien.entities.user.User;
-import at.tuwien.exception.NotAllowedException;
-import at.tuwien.exception.TokenNotEligableException;
-import at.tuwien.exception.TokenNotFoundException;
-import at.tuwien.exception.UserNotFoundException;
-import at.tuwien.mapper.UserMapper;
-import at.tuwien.service.TokenService;
-import at.tuwien.service.UserService;
-import io.micrometer.core.annotation.Timed;
-import io.swagger.v3.oas.annotations.Operation;
-import io.swagger.v3.oas.annotations.security.SecurityRequirement;
-import lombok.extern.log4j.Log4j2;
-import org.springframework.beans.factory.annotation.Autowired;
-import org.springframework.http.HttpStatus;
-import org.springframework.http.ResponseEntity;
-import org.springframework.security.access.prepost.PreAuthorize;
-import org.springframework.transaction.annotation.Transactional;
-import org.springframework.web.bind.annotation.*;
-
-import javax.validation.constraints.NotNull;
-import java.security.Principal;
-import java.util.List;
-import java.util.stream.Collectors;
-
-@Log4j2
-@RestController
-@CrossOrigin(origins = "*")
-@ControllerAdvice
-@RequestMapping("/api/user/token")
-public class TokenEndpoint {
-
-    private final UserMapper userMapper;
-    private final UserService userService;
-    private final TokenService tokenService;
-    private final AuthenticationConfig authenticationConfig;
-
-    @Autowired
-    public TokenEndpoint(UserMapper userMapper, UserService userService, TokenService tokenService,
-                         AuthenticationConfig authenticationConfig) {
-        this.userMapper = userMapper;
-        this.userService = userService;
-        this.tokenService = tokenService;
-        this.authenticationConfig = authenticationConfig;
-    }
-
-    @GetMapping
-    @Transactional(readOnly = true)
-    @PreAuthorize("isAuthenticated()")
-    @Timed(value = "token.list", description = "Time needed to list the developer tokens")
-    @Operation(summary = "Lists developer tokens for user", security = @SecurityRequirement(name = "bearerAuth"))
-    public ResponseEntity<List<TokenBriefDto>> listAll(@NotNull Principal principal) throws UserNotFoundException {
-        log.debug("endpoint list developer tokens, principal={}", principal);
-        final List<Token> tokens = tokenService.findAll(principal);
-        log.trace("found all tokens {}", tokens);
-        final List<TokenBriefDto> dtos = tokens.stream()
-                .map(userMapper::tokenToTokenBriefDto)
-                .collect(Collectors.toList());
-        log.info("Found {} tokens", dtos.size());
-        return ResponseEntity.ok(dtos);
-    }
-
-    @PostMapping
-    @Transactional
-    @PreAuthorize("hasRole('ROLE_RESEARCHER') or hasRole('ROLE_DEVELOPER')")
-    @Timed(value = "token.create", description = "Time needed to create a developer token")
-    @Operation(summary = "Create developer token", security = @SecurityRequirement(name = "bearerAuth"))
-    public ResponseEntity<TokenDto> create(@NotNull Principal principal) throws UserNotFoundException,
-            TokenNotEligableException {
-        log.debug("endpoint create developer token, principal={}", principal);
-        /* check */
-        final List<Token> tokens = tokenService.findAll(principal);
-        log.trace("found all tokens {}", tokens);
-        if (tokens.size() >= authenticationConfig.getTokenCount()) {
-            log.error("Failed to create token, already exceeded maximum quota of {}", authenticationConfig.getTokenCount());
-            throw new TokenNotEligableException("Failed to create token");
-        }
-        /* create */
-        final Token token = tokenService.create(principal);
-        final TokenDto dto = userMapper.tokenToTokenDto(token);
-        log.trace("created developer token and resulting in {}", dto);
-        return ResponseEntity.status(HttpStatus.CREATED)
-                .body(dto);
-    }
-
-    @DeleteMapping("/{id}")
-    @Transactional
-    @PreAuthorize("hasRole('ROLE_RESEARCHER') or hasRole('ROLE_DEVELOPER')")
-    @Timed(value = "token.delete", description = "Time needed to delete the developer tokens")
-    @Operation(summary = "Delete developer token", security = @SecurityRequirement(name = "bearerAuth"))
-    public ResponseEntity<?> delete(@NotNull @PathVariable("id") Long id,
-                                    @NotNull Principal principal) throws TokenNotFoundException, UserNotFoundException,
-            NotAllowedException {
-        log.debug("endpoint delete developer token, id={}, principal={}", id, principal);
-        final Token token = tokenService.findOne(id);
-        final User user = userService.findByUsername(principal.getName());
-        if (!token.getCreator().equals(user.getId())) {
-            log.error("Failed to delete token because it is not owned by the current user");
-            throw new NotAllowedException("Failed to delete token because it is not owned by the current user");
-        }
-        tokenService.delete(token.getTokenHash(), principal);
-        return ResponseEntity.status(HttpStatus.ACCEPTED)
-                .build();
-    }
-
-}
\ No newline at end of file