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This is an archived project. Repository and other project resources are read-only.
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FAIR Data Austria DB Repository
fda-docs
Commits
a61f246e
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Commit
a61f246e
authored
2 years ago
by
Martin Weise
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Stage: build
Stage: deploy
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docs/system.md
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a61f246e
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@@ -35,7 +35,7 @@ View the docker images for the documentation of the service.
* Ports: 5000/tcp
* Prometheus: `http://:5000/metrics`
* Swagger UI: `http://:5000/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/analyse)
* Swagger UI: `http://:5000/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/analyse" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
It suggests data types for the FAIR Portal when creating a table from a
*comma separated values*
(CSV) file. It
recommends enumerations for columns and returns e.g. a list of potential primary key candidates. The researcher is able
...
...
@@ -147,7 +147,7 @@ regular declares and offers a management interface at port `15672`.
* Info: `http://:9091/actuator/info`
* Health: `http://:9091/actuator/health`
* Prometheus: `http://:9091/actuator/prometheus`
* Swagger UI: `http://:9091/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/container)
* Swagger UI: `http://:9091/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/container" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
It is responsible for Docker container lifecycle operations and updating the local copy of the Docker images.
...
...
@@ -159,7 +159,7 @@ It is responsible for Docker container lifecycle operations and updating the loc
* Info: `http://:9092/actuator/info`
* Health: `http://:9092/actuator/health`
* Prometheus: `http://:9092/actuator/prometheus`
* Swagger UI: `http://:9092/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/database)
* Swagger UI: `http://:9092/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/database" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
It creates the databases inside a Docker container and the Query Store. Currently, we only
support
[
MariaDB
](
https://mariadb.org/
)
images that allow table versioning with low programmatic effort.
...
...
@@ -198,7 +198,7 @@ the [Spring Cloud Gateway](https://spring.io/projects/spring-cloud-gateway) to r
* Info: `http://:9096/actuator/info`
* Health: `http://:9096/actuator/health`
* Prometheus: `http://:9096/actuator/prometheus`
* Swagger UI: `http://:9096/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/identifier)
* Swagger UI: `http://:9096/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/identifier" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
This microservice is responsible for creating and resolving a
*persistent identifier*
(PID) attached to a query to
obtain the metadata attached to it and allow re-execution of a query. We store both the query and hashes of the query
...
...
@@ -229,7 +229,7 @@ The default credentials are `root:dbrepo` for the database `fda`. Connect to the
* Info: `http://:9099/actuator/info`
* Health: `http://:9099/actuator/health`
* Prometheus: `http://:9099/actuator/prometheus`
* Swagger UI: `http://:9099/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/metadata)
* Swagger UI: `http://:9099/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/metadata" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
This service provides an OAI-PMH endpoint for metadata crawler.
...
...
@@ -249,7 +249,7 @@ The NGINX reverse proxy bundles the services and enables SSL/TLS communication f
* Info: `http://:9093/actuator/info`
* Health: `http://:9093/actuator/health`
* Prometheus: `http://:9093/actuator/prometheus`
* Swagger UI: `http://:9093/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/query)
* Swagger UI: `http://:9093/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/query" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
It provides an interface to insert data into the tables created by the Table Service. It also allows for view-only,
paginated and versioned query execution to the raw data and consumes messages in the message queue from the Broker
...
...
@@ -275,7 +275,7 @@ All requests need to be authenticated, by default the credentials `elastic:elast
* Ports: 5010/tcp
* Prometheus: `http://:5010/metrics`
* Swagger UI: `http://:5010/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/semantics)
* Swagger UI: `http://:5010/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/semantics" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
It is designed to map terms in the domain of units of measurement to controlled vocabulary, modelled in
the
[
ontology of units of measure
](
https://github.com/HajoRijgersberg/OM
)
. This service validates researcher provided in
...
...
@@ -290,7 +290,7 @@ Furthermore, there is a method for auto-completing text and listing a descriptio
* Info: `http://:9094/actuator/info`
* Health: `http://:9094/actuator/health`
* Prometheus: `http://:9094/actuator/prometheus`
* Swagger UI: `http://:9094/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/table)
* Swagger UI: `http://:9094/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/table" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
This microservice handles table operations inside a database that is managed by the Database Service. We
use
[
Hibernate
](
https://hibernate.org/orm/
)
for schema and data ingest operations.
...
...
@@ -318,6 +318,6 @@ It provides a *graphical user interface* (GUI) for a researcher to interact with
* Info: `http://:9098/actuator/info`
* Health: `http://:9098/actuator/health`
* Prometheus: `http://:9098/actuator/prometheus`
* Swagger UI: `http://:9098/swagger-ui/index.html`
[
:fontawesome-solid-square-up-right: view online
](/infrastructures/dbrepo/swagger/user)
* Swagger UI: `http://:9098/swagger-ui/index.html`
<a href="/infrastructures/dbrepo/swagger/user" target="_blank">
:fontawesome-solid-square-up-right: view online
</a>
This microservice handles user information.
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