update for publication release

README.md

 # Code repository for the publication "Uncertainties in cloud-radiative heating within an idealized extratropical cyclone".
 
-The preprint is submitted to the Atmospheric Chemistry and Physics (ACP) journal.
-https://egusphere.copernicus.org/preprints/2023/egusphere-2023-1699/
-
 **Author:** Behrooz Keshtgar, IMKTRO, Karlsruhe Institute of Technology, behrooz.keshtgar@kit.edu
 
 **The repository contains:**
@@ -19,4 +16,4 @@ https://egusphere.copernicus.org/preprints/2023/egusphere-2023-1699/
 
 * **plots4paper:** jupyter notebooks for figures used in papers, also figure pdfs
 
-The raw data from ICON simulations are archived n the High-Performance Storage System at the German Climate Computing Center (DKRZ). The post-processed data used in the analysis along with a copy of the Git repository will be published at the LMU open data server.
+The simulation’s raw outputs are archived on the High-Performance Storage System at the German Climate Computing Center (DKRZ). The post-processed data for producing the figures in the manuscript along with a copy of the Git repository are published in an online repository at https://doi.org/10.5281/zenodo.10807815 

offlineRT/README.md

@@ -11,13 +11,13 @@ This directory contains scripts for pre- and post-processing of input and output
  - c_cluster_solar/thermal_ipa3d_cg/dl: 1D radiative transfer calculations with the Delta-Eddington two-stream solver for NWP homogeneous grid-box clouds and homogeneous clouds with cloud fraction at a resolution of 2.5 km
  - solar/thermal_clear_sky: Clear-sky radiative transfer calculations with Delta-Eddington two-stream and MYSTIC solvers
 
-* To run the offline radiative transfer calculations, run the bash script *'step1_makeInpFiles.sh'* in the desired radiative transfer_subdirectory/ccSolar/thermal. This will automatically create input files for all subdomains and time steps to be used by the *'uvspec'* program of LibRadtran.Finally, run *'submit_runs.sh'* to distribute the runs to different nodes. The outputs are radiative heating rates written as ASCII files in the representative subdirectory.
+* To run the offline radiative transfer calculations, run the bash script *'step1_makeInpFiles.sh'* in the desired radiative transfer_subdirectory/ccSolar/thermal. This will automatically create input files for all subdomains and time steps to be used by the *'uvspec'* program of LibRadtran. Finally, run *'submit_runs.sh'* to distribute the runs to different nodes. The outputs are radiative heating rates written as ASCII files in the representative subdirectory.
 
-* The python scripts **convert_libradtran_data_to_netcdf().py** process the all-sky and clear-sky radiative heating rate outputs from each radiative transfer calculation and merge the outputs from all subdomains to get the cloud radiative heating over the entire LEM domain and save the result as a netcdf file.
+* The Python scripts **convert_libradtran_data_to_netcdf().py** process the all-sky and clear-sky radiative heating rate outputs from each radiative transfer calculation and merge the outputs from all subdomains to get the cloud radiative heating over the entire LEM domain and save the result as a netcdf file.
 
-* The python script **pre_process_data_for_archiving.py** is further post-processing the output data for archiving and using in the analysis.
+* The Python script **pre_process_data_for_archiving.py** is for further post-processing the output data for archiving and using in the analysis.
 
-* The python script **estimating_MC_noise_of_MYSTIC.py** estimates the Monte Carlo noise of the MYSTIC solver, please refer to the paper for more information.
+* The Python script **estimating_MC_noise_of_MYSTIC.py** estimates the Monte Carlo noise of the MYSTIC solver, please refer to the paper for more information.
 
 
  

sims/runscripts/README.md

@@ -6,8 +6,19 @@ LC1-channel-4000x9000km-2km-0002        : Only with cloud radiaton, two-moment m
 
 *Large eddy model simulations with ICON-LEM*
 
+WCB ascent:
+
 LC1-LES-471x667km-lon40-lat44-300m-0003 : Only with cloud radiaton, two-moment microphysics, ecrad, LATBC: NWP_0002
+
+WCB anticyclonic outflow:
+
 LC1-LES-471x667km-lon50-lat48-300m-0004 : Only with cloud radiaton, two-moment microphysics, ecrad, LATBC: NWP_0002
+
+WCB cyclonic outflow:
+
 LC1-LES-471x667km-lon30-lat53-300m-0005 : Only with cloud radiaton, two-moment microphysics, ecrad, LATBC: NWP_0002
+
+Shallow cumulus:
+
 LC1-LES-471x667km-lon25-lat40-300m-0006 : Only with cloud radiaton, two-moment microphysics, ecrad, LATBC: NWP_0002