initial commit

README.md

-# keshtgar-etal-2023-crh-uncertainty
+**Code repository for the publication "Uncertainties in cloud-radiative heating within an idealized extratropical cyclone".
 
+Author: Behrooz Keshtgar, IMK, Karlsruhe Institute of Technology, behrooz.keshtgar@kit.edu
 
+The repository contains:
 
-## Getting started
+* sims: ICON simulation runscripts
+  - Baroclinic life cycle simulation (ICON-NWP)
+  - Large Eddy Model Simulations (ICON-LEM)
 
-To make it easy for you to get started with GitLab, here's a list of recommended next steps.
+* offlineRT: scripts for running LibRadTran
+  - Scripts for post-processing LEM simulation output for use in offline radiative transfer calculations
+  - Python scripts for post-processing LibRadTran results
 
-Already a pro? Just edit this README.md and make it your own. Want to make it easy? [Use the template at the bottom](#editing-this-readme)!
+* plots4paper: jupyter notebooks for figures used in papers, also figure pdfs
 
-## Add your files
-
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-
-```
-cd existing_repo
-git remote add origin https://gitlab.phaidra.org/climate/keshtgar-etal-2023-crh-uncertainty.git
-git branch -M main
-git push -uf origin main
-```
-
-## Integrate with your tools
-
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-
-## Collaborate with your team
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-
-## Test and Deploy
-
-Use the built-in continuous integration in GitLab.
-
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-
-***
-
-# Editing this README
-
-When you're ready to make this README your own, just edit this file and use the handy template below (or feel free to structure it however you want - this is just a starting point!). Thank you to [makeareadme.com](https://www.makeareadme.com/) for this template.
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-## Authors and acknowledgment
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+The post-processed data used in the analysis and a copy of the code repository are available at ...

sims/planar_grid/grid.create_plane.run

+#!/bin/bash
+#=============================================================================
+#SBATCH --account=bb1135
+#SBATCH --job-name=grid.create_plane_grids.run
+#SBATCH --partition=compute
+####SBATCH --workdir=
+#SBATCH --nodes=1
+#SBATCH --threads-per-core=2
+#SBATCH --mem=120000
+#SBATCH --output=/work/bb1135/b381185/tools/GridGenerator_master/run/LOG.grid.create_plane_grids.run.%j.o
+#SBATCH --error=/work/bb1135/b381185/tools/GridGenerator_master/run/LOG.grid.create_plane_grids.run.%j.o
+#SBATCH --exclusive
+#=============================================================================
+#
+# ICON run script. Created by ./config/make_target_runscript
+# target machine is mpipc
+# target use_compiler is intel
+# with mpi=no
+# with openmp=yes
+# memory_model=huge
+# submit with 
+# 
+#=============================================================================
+set -x
+. ./add_run_routines
+#-----------------------------------------------------------------------------
+# target parameters
+# ----------------------------
+site="zmaw.de"
+target="mpipc"
+compiler="intel"
+loadmodule="gcc/5.1.0 intel/16.0.0 "
+with_mpi="no"
+with_openmp="yes"
+job_name="grid.create_channels.run"
+submit=""
+#-----------------------------------------------------------------------------
+# openmp environment variables
+# ----------------------------
+export OMP_NUM_THREADS=2
+export ICON_THREADS=2
+export OMP_SCHEDULE=static
+export OMP_DYNAMIC="false"
+export OMP_STACKSIZE=512M
+#-----------------------------------------------------------------------------
+# MPI variables
+# ----------------------------
+mpi_root=
+no_of_nodes=1
+mpi_procs_pernode=1
+mpi_total_procs=1
+START=""
+#-----------------------------------------------------------------------------
+# load ../setting if exists  
+if [ -a ../setting ]
+then
+  echo "Load Setting"
+  . ../setting
+fi
+#-----------------------------------------------------------------------------
+bindir="${basedir}/build/x86_64-unknown-linux-gnu/bin"   # binaries
+BUILDDIR=build/x86_64-unknown-linux-gnu
+#-----------------------------------------------------------------------------
+#=============================================================================
+# load profile
+if [ -a  /client/etc/profile.zmaw ] ; then
+. /client/etc/profile.zmaw
+#=============================================================================
+#=============================================================================
+# load modules
+# module purge
+module unload gcc intel nag 
+module load "$loadmodule"
+module list
+#=============================================================================
+fi
+#=============================================================================
+export LD_LIBRARY_PATH=/sw/wheezy-x64/netcdf-4.3.2-static-gccsys/lib:$LD_LIBRARY_PATH
+#=============================================================================
+nproma=64
+cdo="cdo"
+cdo_diff="cdo diffn"
+icon_data_rootFolder="/pool/data/ICON"
+icon_data_poolFolder="/pool/data/ICON"
+icon_data_buildbotFolder="/pool/data/ICON/buildbot_data"
+icon_data_buildbotFolder_aes="/pool/data/ICON/buildbot_data/aes"
+icon_data_buildbotFolder_oes="/pool/data/ICON/buildbot_data/oes"
+#!/bin/bash
+#=============================================================================
+WORKDIR=${basedir}/grids
+. ${thisdir}/create_grids_tools
+#-----------------------------------------------------------------------------
+set -x
+#-----------------------------------------------------------------------------
+# Defining grid properties
+
+#lon_center=40.0
+#lat_center=44.0
+#lon_range=10
+#lat_range=12
+
+# ideally length and width can be derived according to:
+#((x_length_km=lon_range*102))
+#((y_length_km=lat_range*96))
+
+# using latitude/longitude distance calculator (https://www.nhc.noaa.gov/gccalc.shtml)
+#x_length_km=785
+#y_length_km=1333
+
+#resolution=300
+#create_raggedOrthogonal_ofTriangles $x_length_km $y_length_km $resolution
+#create_limited_area_boundaries "raggedOrthogonal_${x_length_km}x${y_length_km}_${resolution}.nc" "raggedOrthogonal_${x_length_km}x${y_length_km}_${resolution}_with_boundary.nc"
+
+#----------------------------------------------------------------------------
+# Defining grid properties
+
+lon_center=40.0
+lat_center=44.0
+lon_range=6
+lat_range=6
+
+# ideally length and width can be derived according to:
+#((x_length_km=lon_range*102))
+#((y_length_km=lat_range*96))
+
+# using latitude/longitude distance calculator (https://www.nhc.noaa.gov/gccalc.shtml)
+x_length_km=471
+y_length_km=667
+
+resolution=300
+create_raggedOrthogonal_ofTriangles $x_length_km $y_length_km $resolution
+create_limited_area_boundaries "raggedOrthogonal_${x_length_km}x${y_length_km}_${resolution}.nc" "raggedOrthogonal_${x_length_km}x${y_length_km}_${resolution}_with_boundary.nc"
+
+exit
+

sims/runscripts/README

+simulations
+
+LC1-channel-4000x9000km-2km-0002        : cloud radiaton with two-moment microphysics, ecrad
+
+LC1-LES-471x667km-lon40-lat44-300m-0003 : cloud radiaton with two-moment microphysics, ecrad LATBC: NWP_0002
+LC1-LES-471x667km-lon50-lat48-300m-0004 : cloud radiaton with two-moment microphysics, ecrad LATBC: NWP_0002
+LC1-LES-471x667km-lon30-lat53-300m-0005 : cloud radiaton with two-moment microphysics, ecrad LATBC: NWP_0002
+LC1-LES-471x667km-lon25-lat40-300m-0006 : cloud radiaton with two-moment microphysics, ecrad LATBC: NWP_0002
+