fix logging bugs

src/cats/actions/cats_actions.c

src/cats/actions/setup_actions.c

src/cats/configuration/check_configuration.c

src/cats/configuration/configuration.c

src/cats/configuration/load_configuration.c

src/cats/configuration/load_configuration_environments.c

src/cats/data/cats_datatypes.c

src/cats/debug/debug.c

src/cats/environment/environment.c

src/cats/environment/environment_set.c

src/cats/grids/cats_grid.c

src/cats/hybrid/scalefactor.c

src/cats/inline_population.h

src/cats/misc/cats_random.c

src/cats/mpi/mpi_grid_helpers.c

src/cats/populations/carrying_capacity.c

src/cats/vital_rates/setup_rates.c