diff --git a/08-submission/gff-04-convert_to_embl.sh b/08-submission/gff-04-convert_to_embl.sh index bbe13d8f08be27eb522d032908f2304757d8027f..8149726edeea6e7557ffee3c82ab01ca78e6b7c8 100644 --- a/08-submission/gff-04-convert_to_embl.sh +++ b/08-submission/gff-04-convert_to_embl.sh @@ -4,13 +4,12 @@ module load conda conda activate emblmygff3 GENOME=/lisc/project/zoology/pycnogonum/paper/zenodo/results/draft.fasta -GFF=/lisc/scratch/zoology/pycnogonum/genome/submission/merged_sorted_named_dedup_filtered.gff3 +GFF=/lisc/scratch/zoology/pycnogonum/genome/submission/merged_sorted_named_dedup_flagged.gff3 RESDIR=/lisc/scratch/zoology/pycnogonum/genome/submission cd $RESDIR || exit EMBLmyGFF3 $GFF $GENOME \ - --expose_translations \ --topology linear \ --molecule_type 'genomic DNA' \ --transl_table 1 \ @@ -18,7 +17,7 @@ EMBLmyGFF3 $GFF $GENOME \ --taxonomy INV \ --locus_tag VPG \ --project_id PRJEB80537 \ - -vvv \ + -v \ -o result.embl gzip result.embl \ No newline at end of file