From 74ef0b5079fd7e9a4814bf13c991839ca7001f9f Mon Sep 17 00:00:00 2001
From: Niko <nikolaos.papadopoulos@univie.ac.at>
Date: Fri, 29 Nov 2024 17:37:05 +0100
Subject: [PATCH] emapper source now noted as text in the EMBL file "source:"
is how the third column of the GFF is translated; therefore we changed how we
refer to the Emapper origin of the functional annotation
---
08-submission/gff-02-functional_annot.ipynb | 8 ++++----
1 file changed, 4 insertions(+), 4 deletions(-)
diff --git a/08-submission/gff-02-functional_annot.ipynb b/08-submission/gff-02-functional_annot.ipynb
index 394b059..590383e 100644
--- a/08-submission/gff-02-functional_annot.ipynb
+++ b/08-submission/gff-02-functional_annot.ipynb
@@ -206,7 +206,7 @@
" if description:\n",
" line = f'{line};function={description}'\n",
" if name != f'Uncharacterised protein {gene}' or description:\n",
- " line = f'{line};note=source:EggNOG-mapper'\n",
+ " line = f'{line};note=function predicted by EggNOG-mapper'\n",
"\n",
" if feature_type == 'mRNA':\n",
" mRNA = attributes['ID']\n",
@@ -215,14 +215,14 @@
" if description:\n",
" line = f'{line};function={description}'\n",
" if name != f'Uncharacterised protein {gene}' or description:\n",
- " line = f'{line};note=source:EggNOG-mapper'\n",
+ " line = f'{line};note=function predicted by EggNOG-mapper'\n",
"\n",
" if feature_type == 'CDS' or feature_type == 'exon':\n",
- " line = f'{line};gene={name};product={name};'\n",
+ " line = f'{line};gene={name};product={name}'\n",
" if description:\n",
" line = f'{line};function={description}'\n",
" if name != f'Uncharacterised protein {gene}' or description:\n",
- " line = f'{line};note=source:EggNOG-mapper'\n",
+ " line = f'{line};note=function predicted by EggNOG-mapper'\n",
" named.write(line + '\\n')"
]
}
--
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