From 1abeee81b103a37afa5679deaad3fc65deea9dc1 Mon Sep 17 00:00:00 2001
From: Niko <nikolaos.papadopoulos@univie.ac.at>
Date: Wed, 27 Nov 2024 20:51:36 +0100
Subject: [PATCH] makefile for ease of use

---
 08-submission/Makefile | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 08-submission/Makefile

diff --git a/08-submission/Makefile b/08-submission/Makefile
new file mode 100644
index 0000000..273236f
--- /dev/null
+++ b/08-submission/Makefile
@@ -0,0 +1,19 @@
+SHELL=/usr/bin/env bash
+
+compose:
+	bash gff-01-compose_gff.sh
+
+annotate:
+	module load conda
+	# a conda environment that has pandas and can run jupyter notebooks
+	conda activate jupyterhub-5.1.0
+	jupyter nbconvert --to notebook --execute gff-02-annotate.ipynb
+
+conform:
+	bash gff-03-ENA_conform.sh
+
+embl:
+	bash gff-04-convert_to_embl.sh
+
+validate:
+	bash gff-05-submit_to_ENA.sh validate
\ No newline at end of file
-- 
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