diff --git a/08-submission/Makefile b/08-submission/Makefile new file mode 100644 index 0000000000000000000000000000000000000000..273236f20d831ee27c234f5460d318f1b2410f98 --- /dev/null +++ b/08-submission/Makefile @@ -0,0 +1,19 @@ +SHELL=/usr/bin/env bash + +compose: + bash gff-01-compose_gff.sh + +annotate: + module load conda + # a conda environment that has pandas and can run jupyter notebooks + conda activate jupyterhub-5.1.0 + jupyter nbconvert --to notebook --execute gff-02-annotate.ipynb + +conform: + bash gff-03-ENA_conform.sh + +embl: + bash gff-04-convert_to_embl.sh + +validate: + bash gff-05-submit_to_ENA.sh validate \ No newline at end of file