From 39081b36ff0015601b8795a35e0a71030959a9a8 Mon Sep 17 00:00:00 2001
From: Voigt Aiko <avoigt_teach@l40.vsc.xcat>
Date: Tue, 9 Apr 2024 09:50:20 +0200
Subject: [PATCH] Adss Intel MPI processing pinning to amip run script
---
runs/amip/exp.amip.run | 11 +++++++----
1 file changed, 7 insertions(+), 4 deletions(-)
diff --git a/runs/amip/exp.amip.run b/runs/amip/exp.amip.run
index 50c0d7f..24fd9ca 100755
--- a/runs/amip/exp.amip.run
+++ b/runs/amip/exp.amip.run
@@ -10,7 +10,7 @@
#SBATCH --output=/home/fs72044/avoigt_teach/climlab_s2024/msc-climmodlab-s2024/runs/amip/logfiles/LOG.exp.amip.run.%j.o
#SBATCH --error=/home/fs72044/avoigt_teach/climlab_s2024/msc-climmodlab-s2024/runs/amip/logfiles/LOG.exp.amip.run.%j.o
#SBATCH --exclusive
-#SBATCH --time=00:10:00
+#SBATCH --time=02:30:00
#SBATCH --mail-user=aiko.voigt@univie.ac.at
#SBATCH --mail-type=BEGIN,END,FAIL
@@ -22,13 +22,16 @@ ulimit -s unlimited # unsets limits for RAM
no_of_nodes=3
mpi_procs_pernode=48
((mpi_total_procs=no_of_nodes * mpi_procs_pernode))
+
+# manual fix for mpi pinning with intel mpirun on vsc
+# see https://wiki.vsc.ac.at/doku.php?id=doku:vsc5quickstart#intel_mpi
+export I_MPI_PIN_RESPECT_CPUSET=0
+
#
# blocking length
# ---------------
nproma=16
-
-
#=============================================================================
# Input variables:
@@ -246,7 +249,7 @@ cat > NAMELIST_atm << EOF
ltransport = .true. ! transport
iforcing = 2 ! 0: none, 1: HS, 2: ECHAM, 3: NWP
output = 'nml'
- msg_level = 12 ! level of details report during integration
+ msg_level = 8 ! level of details report during integration
restart_filename = 'AMIP-VSC4_restart_atm_<rsttime>.nc'
activate_sync_timers = .true.
/
--
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