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COMMAND.alternative

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  • Forked from Flexpart / Flexpart
    Source project has a limited visibility.
    run_ens.vsc.mem_0096.sh 1.26 KiB
    
    module purge
    module load intel-mpi/2019.6 intel/19.1.0 netcdf-fortran/4.4.5-intel-19.0.5.281-qye4cqn zlib/1.2.11-intel-19.1.0.166-hs6m2qh  hdf5/1.10.5-intel-19.0.5.281-qyzojtm netcdf/4.7.0-intel-19.0.5.281-75t52g6
    export I_MPI_DEBUG=4
    export OMP_NUM_THREADS=1
    mem_per_task=10G
    cpu_per_task=12
    
    echo "SLURM_ARRAY_TASK_ID:"$SLURM_ARRAY_TASK_ID
    EXPNAME=<exp.expname> 
    
    MAINDIR=<cluster.wrf_rundir_base> 
    pinning=(0-11 12-23 24-35 36-47)
    
    mytasks=4
    for n in `seq 1 $mytasks`
    do
       IENS="$(((($SLURM_ARRAY_TASK_ID - 1)* 4) + $n))"  # ensemble number (5,6,7,8 for job array element 2)
       RUNDIR=$MAINDIR/$EXPNAME/$IENS
       echo "ENSEMBLE NR: "$IENS" in "$RUNDIR
       cd $RUNDIR
       rm -rf rsl.out.0* 
       echo "srun --mem=$mem_per_task --cpus-per-task=$cpu_per_task --cpu_bind=map_cpu:${pinning[$n-1]} --ntasks=1 ./wrf.exe &"
       srun --mem=$mem_per_task --cpus-per-task=$cpu_per_task --cpu_bind=map_cpu:${pinning[$n-1]} --ntasks=1 ./wrf.exe &
       cd ../
    done
    wait
    
    # error checking
    for ((n=1; n<=4; n++))
    do
       IENS="$(((($SLURM_ARRAY_TASK_ID - 1)* 4) + $n))"
       RUNDIR=$MAINDIR/$EXPNAME/$IENS
       cd $RUNDIR
       line=`tail -n 1 rsl.out.0000`
       if [[ $line == *"SUCCESS COMPLETE WRF"* ]]; 
       then 
          echo $RUNDIR 'SUCCESS COMPLETE WRF'
       else  
          echo $RUNDIR $line
          exit 1
       fi
    done