From 3dd0d41719845344342090397e620cfb6fabfe98 Mon Sep 17 00:00:00 2001
From: Marko Mecina <marko.mecina@univie.ac.at>
Date: Wed, 13 Dec 2023 17:34:06 +0100
Subject: [PATCH] don't NaN entire image
---
Ccs/tools/dataprocessing/smile_raw_ce_converter.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/Ccs/tools/dataprocessing/smile_raw_ce_converter.py b/Ccs/tools/dataprocessing/smile_raw_ce_converter.py
index 9eccf34..7a8e256 100755
--- a/Ccs/tools/dataprocessing/smile_raw_ce_converter.py
+++ b/Ccs/tools/dataprocessing/smile_raw_ce_converter.py
@@ -99,7 +99,7 @@ def mk_ed(data):
except:
print(col, row, 'FAILED')
- nodes[:] = np.nan
+ nodes[nodes == 0] = np.nan
ed_img = _assemble_ft_frames_to_fp_view(nodes)
--
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