From 9de56b3db45cf849eca050176d3dd66e01450f70 Mon Sep 17 00:00:00 2001 From: Michael Blaschek <michael.blaschek@univie.ac.at> Date: Wed, 24 Nov 2021 11:17:40 +0000 Subject: [PATCH] Update HandsOn.md --- workshop/HandsOn.md | 18 ++++++++++++++++-- 1 file changed, 16 insertions(+), 2 deletions(-) diff --git a/workshop/HandsOn.md b/workshop/HandsOn.md index 15fa8d5..14b990c 100644 --- a/workshop/HandsOn.md +++ b/workshop/HandsOn.md @@ -293,8 +293,22 @@ In order to include host paths into your container use the `SINGULARITY_BIND` va e.g. ```bash -# Binding /data on host to /mnt inside -singularity exec --bind /data:/mnt my_container.sif ls /mnt +# Directory does not exist by default +singularity exec my_container.sif ls /data +ls: cannot access '/data': No such file or directory +# Binding /data on host to /data inside +singularity exec --bind /data:/data my_container.sif ls /data +log.txt +``` + +or using the environment variables: + +```bash +# on the HOST system +export SINGULARITY_BIND=/data:/data +# execute singularity with no --bind options +singularity exec my_container.sif ls /data +log.txt ``` -- GitLab