From 9d537918942d4143042c69afd3603d164c54ea9d Mon Sep 17 00:00:00 2001
From: Marty Kandes <mkandes@sdsc.edu>
Date: Thu, 4 Oct 2018 13:29:37 -0700
Subject: [PATCH] naked-singularity-v0.4.3 :: set default singularity version
to 2.5.2 in naked_install function within naked-singularity.sh; minor changes
to ubuntu.def and ubuntu-cuda.def for comet; updated ubuntu-cuda-openmpi.def,
ubuntu-cuda-opencl.def, and ubuntu-cuda-opencl-openmpi.def for comet to cuda
9.2
---
README | 4 +-
.../ubuntu/ubuntu-cuda-opencl-openmpi.def | 225 ++++++++++--------
.../sdsc/comet/ubuntu/ubuntu-cuda-opencl.def | 205 +++++++++-------
.../sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def | 219 +++++++++--------
.../us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def | 12 +-
.../us/ucsd/sdsc/comet/ubuntu/ubuntu.def | 7 +-
naked-singularity.sh | 2 +-
7 files changed, 390 insertions(+), 284 deletions(-)
diff --git a/README b/README
index 5333cb7..51ba992 100644
--- a/README
+++ b/README
@@ -46,8 +46,8 @@ AUTHOR
VERSION
- 0.4.2
+ 0.4.3
LAST UPDATED
- Tuesday, October 2nd, 2018
+ Thursday, October 4th, 2018
diff --git a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl-openmpi.def b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl-openmpi.def
index f3eafbb..3042f5b 100644
--- a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl-openmpi.def
+++ b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl-openmpi.def
@@ -5,11 +5,11 @@ OSVersion: xenial
%labels
APPLICATION_NAME ubuntu + cuda + opencl + openmpi
- APPLICATION_VERSION 16.04 + 8.0.44 + 16.1.2 + 1.8.4
+ APPLICATION_VERSION 16.04 + 9.2.88 + 16.1.2 + 1.8.4
APPLICATION_URL https://software.intel.com/en-us/articles/opencl-drivers#latest_CPU_runtime
SYSTEM_NAME comet
- SYSTEM_SINGULARITY_VERSION 2.5.1
+ SYSTEM_SINGULARITY_VERSION 2.5.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 8192
@@ -17,7 +17,7 @@ OSVersion: xenial
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20180706
+ LAST_UPDATED 20181003
%setup
@@ -25,6 +25,11 @@ OSVersion: xenial
# Set system locale
export LC_ALL=C
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
+ export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
%post -c /bin/bash
@@ -128,7 +133,7 @@ OSVersion: xenial
apt-get -y install default-jre
# Download NVIDIA drivers, libraries, and packages
- wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-396-dev_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-modprobe_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/libcuda1-396_396.26-0ubuntu1_amd64.deb"
@@ -138,42 +143,58 @@ OSVersion: xenial
wget --wait=10 "${CUDA_REPO_URL}/nvidia-settings_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/cuda-drivers_396.26-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-license-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-core-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-8-0_8.0.44-1_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libnccl2_2.2.12-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.2.12-1+cuda8.0_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-license-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvcc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cuobjdump-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprune-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-compiler-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-core-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvdisasm-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gdb-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprof-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-memcheck-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cupti-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvtx-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvvp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-9-2_9.2.88-1_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libnccl2_2.3.4-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.3.4-1+cuda9.2_amd64.deb"
# Fix for "update-alternatives: error: error creating symbolic link '/usr/lib/nvidia/alternate-install-present.dpkg-tmp': No such file or directory"
mkdir -p /usr/lib/nvidia
@@ -189,46 +210,63 @@ OSVersion: xenial
dpkg -i nvidia-settings_396.26-0ubuntu1_amd64.deb
dpkg -i cuda-drivers_396.26-1_amd64.deb
- dpkg -i cuda-license-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-misc-headers-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-core-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-driver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-command-line-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvml-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-samples-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-documentation-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-visual-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-toolkit-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-runtime-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-demo-suite-8-0_8.0.44-1_amd64.deb
-
- dpkg -i libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb
- dpkg -i libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb
-
- dpkg -i libnccl2_2.2.12-1+cuda8.0_amd64.deb
- dpkg -i libnccl-dev_2.2.12-1+cuda8.0_amd64.deb
+ dpkg -i cuda-license-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-misc-headers-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvcc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cuobjdump-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprune-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-compiler-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-core-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-driver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvdisasm-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gdb-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprof-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-memcheck-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cupti-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvtx-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-command-line-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvml-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-samples-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-documentation-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nsight-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvvp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-visual-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-toolkit-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-runtime-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-demo-suite-9-2_9.2.88-1_amd64.deb
+
+ dpkg -i libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb
+ dpkg -i libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb
+
+ dpkg -i libnccl2_2.3.4-1+cuda9.2_amd64.deb
+ dpkg -i libnccl-dev_2.3.4-1+cuda9.2_amd64.deb
# Set paths to CUDA binaries and libraries
- export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
# Location of Intel repository
declare -r INTEL_ROOT_URL='http://registrationcenter-download.intel.com'
@@ -264,6 +302,9 @@ OSVersion: xenial
ln /opt/intel/opencl-1.2-6.4.0.37/etc/intel64.icd /etc/OpenCL/vendors/intel64.icd
ldconfig
+ # Test OpenCL installation
+ clinfo
+
# Install basic drivers for user space access to Ethernet, RDMA,
# and Infiniband. See https://community.mellanox.com/docs/DOC-2431
apt-get -y install dkms
@@ -302,19 +343,12 @@ OSVersion: xenial
tar -xzvf openmpi-1.8.4.tar.gz
cd openmpi-1.8.4
./configure --prefix=/opt/openmpi-1.8.4 --with-cuda
- make all install
+ make all install
# Set paths to OpenMPI binaries and libraries
export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
- # Set container environment variables
- cd /.singularity.d/env
- echo 'export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"' >> 90-environment.sh
- echo 'export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"' >> 90-environment.sh
- echo 'export PATH="/opt/openmpi-1.8.4/bin:${PATH}"' >> 90-environment.sh
- echo 'export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"' >> 90-environment.sh
-
# Update database for mlocate
updatedb
@@ -322,15 +356,12 @@ OSVersion: xenial
%runscript
-%test
-
- export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
- nvcc --version
-
- # Test OpenCL installation
- clinfo
+ echo " "
+ echo " __________________ __ _______________ "
+ echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
+ echo " --/ / / / / / /|_/ / __/ / / "
+ echo " / /___/ /_/ / / / / /___ / / "
+ echo " \____/\____/_/ /_/_____/ /_/ "
+ echo " "
- #export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
- #export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
- #mpirun --version
+%test
diff --git a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl.def b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl.def
index 73fe5de..23bafbf 100644
--- a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl.def
+++ b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-opencl.def
@@ -5,11 +5,11 @@ OSVersion: xenial
%labels
APPLICATION_NAME ubuntu + cuda + opencl
- APPLICATION_VERSION 16.04 + 8.0.44 + 16.1.2
+ APPLICATION_VERSION 16.04 + 9.2.88 + 16.1.2
APPLICATION_URL https://software.intel.com/en-us/articles/opencl-drivers#latest_CPU_runtime
SYSTEM_NAME comet
- SYSTEM_SINGULARITY_VERSION 2.5.1
+ SYSTEM_SINGULARITY_VERSION 2.5.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 8192
@@ -17,7 +17,7 @@ OSVersion: xenial
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20180706
+ LAST_UPDATED 20181003
%setup
@@ -25,6 +25,9 @@ OSVersion: xenial
# Set system locale
export LC_ALL=C
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
%post -c /bin/bash
@@ -128,7 +131,7 @@ OSVersion: xenial
apt-get -y install default-jre
# Download NVIDIA drivers, libraries, and packages
- wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-396-dev_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-modprobe_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/libcuda1-396_396.26-0ubuntu1_amd64.deb"
@@ -138,42 +141,58 @@ OSVersion: xenial
wget --wait=10 "${CUDA_REPO_URL}/nvidia-settings_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/cuda-drivers_396.26-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-license-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-core-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-8-0_8.0.44-1_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libnccl2_2.2.12-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.2.12-1+cuda8.0_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-license-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvcc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cuobjdump-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprune-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-compiler-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-core-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvdisasm-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gdb-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprof-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-memcheck-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cupti-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvtx-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvvp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-9-2_9.2.88-1_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libnccl2_2.3.4-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.3.4-1+cuda9.2_amd64.deb"
# Fix for "update-alternatives: error: error creating symbolic link '/usr/lib/nvidia/alternate-install-present.dpkg-tmp': No such file or directory"
mkdir -p /usr/lib/nvidia
@@ -189,46 +208,63 @@ OSVersion: xenial
dpkg -i nvidia-settings_396.26-0ubuntu1_amd64.deb
dpkg -i cuda-drivers_396.26-1_amd64.deb
- dpkg -i cuda-license-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-misc-headers-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-core-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-driver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-command-line-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvml-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-samples-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-documentation-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-visual-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-toolkit-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-runtime-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-demo-suite-8-0_8.0.44-1_amd64.deb
-
- dpkg -i libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb
- dpkg -i libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb
-
- dpkg -i libnccl2_2.2.12-1+cuda8.0_amd64.deb
- dpkg -i libnccl-dev_2.2.12-1+cuda8.0_amd64.deb
+ dpkg -i cuda-license-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-misc-headers-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvcc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cuobjdump-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprune-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-compiler-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-core-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-driver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvdisasm-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gdb-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprof-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-memcheck-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cupti-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvtx-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-command-line-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvml-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-samples-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-documentation-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nsight-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvvp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-visual-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-toolkit-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-runtime-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-demo-suite-9-2_9.2.88-1_amd64.deb
+
+ dpkg -i libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb
+ dpkg -i libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb
+
+ dpkg -i libnccl2_2.3.4-1+cuda9.2_amd64.deb
+ dpkg -i libnccl-dev_2.3.4-1+cuda9.2_amd64.deb
# Set paths to CUDA binaries and libraries
- export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
# Location of Intel repository
declare -r INTEL_ROOT_URL='http://registrationcenter-download.intel.com'
@@ -267,11 +303,6 @@ OSVersion: xenial
# Test OpenCL installation
clinfo
- # Set container environment variables
- cd /.singularity.d/env
- echo 'export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"' >> 90-environment.sh
- echo 'export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"' >> 90-environment.sh
-
# Update database for mlocate
updatedb
@@ -279,4 +310,12 @@ OSVersion: xenial
%runscript
+ echo " "
+ echo " __________________ __ _______________ "
+ echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
+ echo " --/ / / / / / /|_/ / __/ / / "
+ echo " / /___/ /_/ / / / / /___ / / "
+ echo " \____/\____/_/ /_/_____/ /_/ "
+ echo " "
+
%test
diff --git a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def
index 4698c38..bcbb955 100644
--- a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def
+++ b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda-openmpi.def
@@ -5,11 +5,11 @@ OSVersion: xenial
%labels
APPLICATION_NAME ubuntu + cuda + openmpi
- APPLICATION_VERSION 16.04 + 8.0.44 + 1.8.4
+ APPLICATION_VERSION 16.04 + 9.2.88 + 1.8.4
APPLICATION_URL https://www.open-mpi.org/faq/?category=runcuda
SYSTEM_NAME comet
- SYSTEM_SINGULARITY_VERSION 2.5.1
+ SYSTEM_SINGULARITY_VERSION 2.5.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 8192
@@ -17,7 +17,7 @@ OSVersion: xenial
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20180619
+ LAST_UPDATED 20181003
%setup
@@ -25,6 +25,11 @@ OSVersion: xenial
# Set system locale
export LC_ALL=C
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
+ export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
%post -c /bin/bash
@@ -128,7 +133,7 @@ OSVersion: xenial
apt-get -y install default-jre
# Download NVIDIA drivers, libraries, and packages
- wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-396_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-396-dev_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/nvidia-modprobe_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/libcuda1-396_396.26-0ubuntu1_amd64.deb"
@@ -138,42 +143,58 @@ OSVersion: xenial
wget --wait=10 "${CUDA_REPO_URL}/nvidia-settings_396.26-0ubuntu1_amd64.deb"
wget --wait=10 "${CUDA_REPO_URL}/cuda-drivers_396.26-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-license-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-core-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-8-0_8.0.44-1_amd64.deb"
- wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-8-0_8.0.44-1_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb"
-
- wget --wait=10 "${ML_REPO_URL}/libnccl2_2.2.12-1+cuda8.0_amd64.deb"
- wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.2.12-1+cuda8.0_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-license-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvcc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cuobjdump-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprune-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-compiler-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-core-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvdisasm-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gdb-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprof-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-memcheck-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cupti-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvtx-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cublas-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvvp-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-tools-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-dev-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-9-2_9.2.88-1_amd64.deb"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-9-2_9.2.88-1_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb"
+
+ wget --wait=10 "${ML_REPO_URL}/libnccl2_2.3.4-1+cuda9.2_amd64.deb"
+ wget --wait=10 "${ML_REPO_URL}/libnccl-dev_2.3.4-1+cuda9.2_amd64.deb"
# Fix for "update-alternatives: error: error creating symbolic link '/usr/lib/nvidia/alternate-install-present.dpkg-tmp': No such file or directory"
mkdir -p /usr/lib/nvidia
@@ -189,46 +210,63 @@ OSVersion: xenial
dpkg -i nvidia-settings_396.26-0ubuntu1_amd64.deb
dpkg -i cuda-drivers_396.26-1_amd64.deb
- dpkg -i cuda-license-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-misc-headers-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-core-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-driver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cudart-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-command-line-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvrtc-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvml-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-nvgraph-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusolver-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cublas-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cufft-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-curand-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-cusparse-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-npp-dev-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-samples-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-documentation-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-visual-tools-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-toolkit-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-runtime-8-0_8.0.44-1_amd64.deb
- dpkg -i cuda-demo-suite-8-0_8.0.44-1_amd64.deb
-
- dpkg -i libcudnn7_7.1.4.18-1+cuda8.0_amd64.deb
- dpkg -i libcudnn7-dev_7.1.4.18-1+cuda8.0_amd64.deb
-
- dpkg -i libnccl2_2.2.12-1+cuda8.0_amd64.deb
- dpkg -i libnccl-dev_2.2.12-1+cuda8.0_amd64.deb
+ dpkg -i cuda-license-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-misc-headers-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvcc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cuobjdump-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprune-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-compiler-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-core-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-driver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cudart-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvdisasm-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gdb-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvprof-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-memcheck-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cupti-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-gpu-library-advisor-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvtx-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-command-line-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvrtc-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvml-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvgraph-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusolver-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cublas-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cufft-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-curand-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-cusparse-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-npp-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-samples-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-documentation-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nsight-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-nvvp-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-visual-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-tools-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-dev-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-toolkit-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-libraries-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-runtime-9-2_9.2.88-1_amd64.deb
+ dpkg -i cuda-demo-suite-9-2_9.2.88-1_amd64.deb
+
+ dpkg -i libcudnn7_7.2.1.38-1+cuda9.2_amd64.deb
+ dpkg -i libcudnn7-dev_7.2.1.38-1+cuda9.2_amd64.deb
+
+ dpkg -i libnccl2_2.3.4-1+cuda9.2_amd64.deb
+ dpkg -i libnccl-dev_2.3.4-1+cuda9.2_amd64.deb
# Set paths to CUDA binaries and libraries
- export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export PATH="/usr/local/cuda-9.2/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-9.2/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+ export LD_LIBRARY_PATH="${LD_LIBRARY_PATH}:/usr/local/cuda/extras/CUPTI/lib64"
# Install basic drivers for user space access to Ethernet, RDMA,
# and Infiniband. See https://community.mellanox.com/docs/DOC-2431
@@ -268,19 +306,12 @@ OSVersion: xenial
tar -xzvf openmpi-1.8.4.tar.gz
cd openmpi-1.8.4
./configure --prefix=/opt/openmpi-1.8.4 --with-cuda
- make all install
+ make all install
# Set paths to OpenMPI binaries and libraries
export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
- # Set container environment variables
- cd /.singularity.d/env
- echo 'export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"' >> 90-environment.sh
- echo 'export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"' >> 90-environment.sh
- echo 'export PATH="/opt/openmpi-1.8.4/bin:${PATH}"' >> 90-environment.sh
- echo 'export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"' >> 90-environment.sh
-
# Update database for mlocate
updatedb
@@ -288,12 +319,12 @@ OSVersion: xenial
%runscript
-%test
-
- export PATH="/usr/local/cuda-8.0/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="/usr/local/cuda-8.0/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
- nvcc --version
+ echo " "
+ echo " __________________ __ _______________ "
+ echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
+ echo " --/ / / / / / /|_/ / __/ / / "
+ echo " / /___/ /_/ / / / / /___ / / "
+ echo " \____/\____/_/ /_/_____/ /_/ "
+ echo " "
- #export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
- #export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
- #mpirun --version
+%test
diff --git a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def
index d37b794..cc2ff93 100644
--- a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def
+++ b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu-cuda.def
@@ -5,7 +5,7 @@ OSVersion: xenial
%labels
APPLICATION_NAME ubuntu + cuda
- APPLICATION_VERSION 16.04 + 9.2.8
+ APPLICATION_VERSION 16.04 + 9.2.88
APPLICATION_URL https://developer.nvidia.com/cuda-zone
SYSTEM_NAME comet
@@ -17,7 +17,7 @@ OSVersion: xenial
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20180927
+ LAST_UPDATED 20181003
%setup
@@ -273,4 +273,12 @@ OSVersion: xenial
%runscript
+ echo " "
+ echo " __________________ __ _______________ "
+ echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
+ echo " --/ / / / / / /|_/ / __/ / / "
+ echo " / /___/ /_/ / / / / /___ / / "
+ echo " \____/\____/_/ /_/_____/ /_/ "
+ echo " "
+
%test
diff --git a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def
index 376ef18..254df0f 100644
--- a/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def
+++ b/definition-files/us/ucsd/sdsc/comet/ubuntu/ubuntu.def
@@ -9,7 +9,7 @@ OSVersion: xenial
APPLICATION_URL https://www.ubuntu.com/
SYSTEM_NAME comet
- SYSTEM_SINGULARITY_VERSION 2.5.1
+ SYSTEM_SINGULARITY_VERSION 2.5.2
SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
SINGULARITY_IMAGE_SIZE 2048
@@ -17,7 +17,7 @@ OSVersion: xenial
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20180718
+ LAST_UPDATED 20181003
%setup
@@ -89,9 +89,6 @@ OSVersion: xenial
chmod +x Miniconda3-latest-Linux-x86_64.sh
./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
- # Set container environment variables
- cd /.singularity.d/env
-
# Update database for mlocate
updatedb
diff --git a/naked-singularity.sh b/naked-singularity.sh
index d09a239..b971713 100755
--- a/naked-singularity.sh
+++ b/naked-singularity.sh
@@ -326,7 +326,7 @@ naked_install() {
local operating_system='ubuntu'
local prefix='/usr/local'
- local version='2.5.1'
+ local version='2.5.2'
naked_out "Read in all command-line options of the 'install' command ..."
--
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