diff --git a/README b/README index 5ae41e9a647490b0330aa62f1ef14aeb5155f1d8..2cc77b1cb4fa3e0b6d5fdad09821afc6eedd8484 100644 --- a/README +++ b/README @@ -29,8 +29,8 @@ AUTHOR VERSION - 0.2.9 + 0.3.0 LAST UPDATED - Wednesday, April 10th, 2018 + Wednesday, April 18th, 2018 diff --git a/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-cpu.def b/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-cpu.def index ee9823ad17e3d2f3ed827d30bb6fbca9dc338271..e511bf1473e25dae00b0c2d5720ae26a51c7bf39 100644 --- a/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-cpu.def +++ b/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-cpu.def @@ -12,7 +12,7 @@ OSVersion: xenial SYSTEM_NAME comet SYSTEM_SINGULARITY_VERSION 2.3.2 SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html - LAST_UPDATED 20180404 + LAST_UPDATED 20180418 %setup @@ -203,6 +203,10 @@ OSVersion: xenial apt-get -y install libopencv-dev apt-get -y install python-opencv + # Install common python packages for the biological and biomedical sciences + apt-get -y install python-biopython + apt-get -y install python-biopython-sql + # Install common python3 packages for data science and machine learning applications apt-get -y install python3-scipy apt-get -y install python3-pandas @@ -214,15 +218,20 @@ OSVersion: xenial apt-get -y install python3-sklearn apt-get -y install python3-nltk + # Install common python3 packages for the biological and biomedical sciences + apt-get -y install python3-biopython + apt-get -y install python3-biopython-sql + # Install Keras dependencies for python(2) and python3 apt-get -y install python-yaml apt-get -y install python3-yaml + + cd /opt # Download, build, and install Keras - cd /opt wget https://github.com/keras-team/keras/archive/2.1.5.tar.gz tar -xzvf 2.1.5.tar.gz - cd keras-2.1.5 + cd /opt/keras-2.1.5 python setup.py install python3 setup.py install diff --git a/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-gpu.def b/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-gpu.def index 94800983aeaf2e2c14cbbc611afbf63dbf5428ab..ed9e9235fe7c31001f1ce7183af24a849cad10a3 100644 --- a/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-gpu.def +++ b/definition-files/us/ucsd/sdsc/comet/keras/keras-tensorflow-gpu.def @@ -12,7 +12,7 @@ OSVersion: xenial SYSTEM_NAME comet SYSTEM_SINGULARITY_VERSION 2.3.2 SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html - LAST_UPDATED 20180405 + LAST_UPDATED 20180418 %setup @@ -382,6 +382,10 @@ OSVersion: xenial apt-get -y install libopencv-dev apt-get -y install python-opencv + # Install common python packages for the biological and biomedical sciences + apt-get -y install python-biopython + apt-get -y install python-biopython-sql + # Install common python3 packages for data science and machine learning applications apt-get -y install python3-scipy apt-get -y install python3-pandas @@ -393,12 +397,17 @@ OSVersion: xenial apt-get -y install python3-sklearn apt-get -y install python3-nltk + # Install common python3 packages for the biological and biomedical sciences + apt-get -y install python3-biopython + apt-get -y install python3-biopython-sql + # Install Keras dependencies for python(2) and python3 apt-get -y install python-yaml apt-get -y install python3-yaml - # Download, build, and install Keras cd /opt + + # Download, build, and install Keras wget https://github.com/keras-team/keras/archive/2.1.5.tar.gz tar -xzvf 2.1.5.tar.gz cd /opt/keras-2.1.5