diff --git a/README b/README index c01017bae0d8fe8ff069b2e70914e00c6d7ec0c4..bb23a7901faa0818d7d858083bb89db999b9106e 100644 --- a/README +++ b/README @@ -46,7 +46,7 @@ AUTHOR VERSION - 0.7.3 + 0.7.4 LAST UPDATED diff --git a/definition-files/comet/jupyter/jupyter-cpu.def b/definition-files/comet/jupyter/jupyter-cpu.def index defb6dd5afb8118f937645a4e340e0995524835a..1dc79a31a556c16a9a11fa7e0138985dffc2735f 100644 --- a/definition-files/comet/jupyter/jupyter-cpu.def +++ b/definition-files/comet/jupyter/jupyter-cpu.def @@ -6,18 +6,18 @@ OSVersion: xenial APPLICATION_NAME jupyter APPLICATION_VERSION 4.4.0 - APPLICATION_URL https://www.ubuntu.com/ + APPLICATION_URL https://jupyter.org/index.html SYSTEM_NAME comet - SYSTEM_SINGULARITY_VERSION 2.5.2 + SYSTEM_SINGULARITY_VERSION 2.6.1 SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html - SINGULARITY_IMAGE_SIZE 4096 + SINGULARITY_IMAGE_SIZE 16384 AUTHOR_NAME Marty Kandes AUTHOR_EMAIL mkandes@sdsc.edu - LAST_UPDATED 20190118 + LAST_UPDATED 20190516 %setup @@ -25,7 +25,7 @@ OSVersion: xenial # Set system locale export LC_ALL=C - export PATH="/opt/miniconda3/bin:${PATH}" + export PATH="/opt/anaconda3/bin:${PATH}" %post -c /bin/bash @@ -80,52 +80,23 @@ OSVersion: xenial # bootstraping process cd /tmp - # Install miniconda2 - wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh - chmod +x Miniconda2-latest-Linux-x86_64.sh - ./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2 - - # Install miniconda3 - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh - chmod +x Miniconda3-latest-Linux-x86_64.sh - ./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3 - - # Install common python(2) packages for data science and machine - # learning applications - export PATH="/opt/miniconda2/bin:${PATH}" - conda install -y numpy - conda install -y mkl - conda install -y mkl-include - conda install -y pandas - conda install -y matplotlib - conda install -y ipython - conda install -y ipython-notebook - conda install -y jupyter - conda install -y sympy - conda install -y nose - conda install -y scikit-learn - conda install -y scikit-image - conda install -y nltk - conda install -y statsmodels - conda install -y opencv - - # Install common python3 packages for data science and machine - # learning applications - export PATH="/opt/miniconda3/bin:${PATH}" - conda install -y numpy - conda install -y mkl - conda install -y mkl-include - conda install -y pandas - conda install -y matplotlib - conda install -y ipython - conda install -y jupyter - conda install -y sympy - conda install -y nose - conda install -y scikit-learn - conda install -y scikit-image - conda install -y nltk - conda install -y statsmodels - conda install -y opencv + # Install Anaconda2 + wget https://repo.anaconda.com/archive/Anaconda2-2019.03-Linux-x86_64.sh + chmod +x Anaconda2-2019.03-Linux-x86_64.sh + ./Anaconda2-2019.03-Linux-x86_64.sh -b -p /opt/anaconda2 + + # Install Anaconda3 + wget https://repo.anaconda.com/archive/Anaconda3-2019.03-Linux-x86_64.sh + chmod +x Anaconda3-2019.03-Linux-x86_64.sh + ./Anaconda3-2019.03-Linux-x86_64.sh -b -p /opt/anaconda3 + + # Install additional python(2) packages with Anaconda2 + export PATH="/opt/anaconda2/bin:${PATH}" + conda install -y jupyterhub + + # Install additional python3 packages with Anaconda3 + export PATH="/opt/anaconda3/bin:${PATH}" + conda install -y jupyterhub # Update database for mlocate updatedb