From 827481c6a9a0850b24def5438a6da20ba07cff0c Mon Sep 17 00:00:00 2001
From: Marty Kandes <mkandes@sdsc.edu>
Date: Fri, 3 Sep 2021 21:14:35 +0000
Subject: [PATCH] rm all older Ubuntu + MPI def files w/o separate MLNX_OFED
layer
---
README.md | 2 +-
...y.ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 | 98 ------------
...arity.ubuntu-18.04-cuda-10.2-openmpi-3.1.6 | 144 ------------------
...arity.ubuntu-18.04-cuda-11.2-openmpi-4.0.5 | 144 ------------------
.../Singularity.ubuntu-18.04-mvapich-2.3.2 | 94 ------------
.../Singularity.ubuntu-18.04-openmpi-3.1.4 | 94 ------------
.../Singularity.ubuntu-18.04-openmpi-3.1.6 | 134 ----------------
.../Singularity.ubuntu-18.04-openmpi-4.0.5 | 134 ----------------
8 files changed, 1 insertion(+), 843 deletions(-)
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-openmpi-3.1.6
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-openmpi-4.0.5
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-mvapich-2.3.2
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.4
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.6
delete mode 100644 definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-4.0.5
diff --git a/README.md b/README.md
index 57c757a..8fdb2f5 100644
--- a/README.md
+++ b/README.md
@@ -60,7 +60,7 @@ University of California, San Diego
## Version
-1.8.9
+1.9.1
## Last Updated
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4 b/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4
deleted file mode 100644
index bacf531..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.1.168-openmpi-3.1.4
+++ /dev/null
@@ -1,98 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04-cuda-10.1.168
-
-%labels
-
- APPLICATION_NAME ubuntu + cuda + openmpi
- APPLICATION_VERSION 18.04 + 10.1.168 + 3.1.4
- APPLICATION_URL https://www.open-mpi.org/faq/?category=runcuda
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20201227
-
-%setup
-
-%environment
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
- export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Set paths to CUDA binaries and libraries
- export CUDA_HOME='/usr/local/cuda-10.1'
- export PATH="${CUDA_HOME}/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="${CUDA_HOME}/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Install basic drivers for user space access to Ethernet, RDMA,
- # and Infiniband. See https://community.mellanox.com/docs/DOC-2431
- apt-get -y install dkms
- apt-get -y install infiniband-diags
- apt-get -y install libibverbs-dev
- apt-get -y install ibacm
- apt-get -y install librdmacm-dev
- #apt-get -y install libmlx4-dev
- #apt-get -y install libmlx5-dev
- apt-get -y install mstflint
- #apt-get -y install libibcm-dev
- apt-get -y install libibmad-dev
- apt-get -y install libibumad-dev
- apt-get -y install opensm
- apt-get -y install srptools
-
- # Install additional tools
- apt-get -y install ibutils
- apt-get -y install ibverbs-utils
- apt-get -y install rdmacm-utils
- apt-get -y install perftest
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install libnl
- apt-get -y install libnl-3-200
- apt-get -y install libnl-route-3-200
- apt-get -y install libnl-route-3-dev
- apt-get -y install libnl-utils
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Download, build, and install OpenMPI
- wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.4.tar.gz
- tar -xf openmpi-3.1.4.tar.gz
- cd openmpi-3.1.4
- ./configure --prefix=/opt/openmpi-3.1.4 --with-cuda
- make all install
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-openmpi-3.1.6 b/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-openmpi-3.1.6
deleted file mode 100644
index b996ba4..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-10.2-openmpi-3.1.6
+++ /dev/null
@@ -1,144 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04-cuda-10.2
-
-%labels
-
- APPLICATION_NAME ubuntu + cuda + openmpi
- APPLICATION_VERSION 18.04 + 10.2 + 3.1.6
- APPLICATION_URL https://www.open-mpi.org
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20210424
-
-%setup
-
-%environment
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='3'
- export OMPI_MINOR='1'
- export OMPI_REVISION='6'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
- export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Set CUDA version
- export CUDA_MAJOR='10'
- export CUDA_MINOR='2'
- export CUDA_VERSION="${CUDA_MAJOR}.${CUDA_MINOR}"
-
- # Set paths to CUDA binaries and libraries
- export CUDA_HOME="/usr/local/cuda-${CUDA_VERSION}"
- export PATH="${CUDA_HOME}/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="${CUDA_HOME}/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
-
- # Install all dependencies and/or prerequisites for Mellanox OFED
- apt-get -y install bison
- apt-get -y install chrpath
- apt-get -y install debhelper
- apt-get -y install dpatch
- apt-get -y install flex
- apt-get -y install graphviz
- apt-get -y install libnl-3-dev
- apt-get -y install libnl-route-3-200
- apt-get -y install tcl-dev
- apt-get -y install tk-dev
- apt-get -y install swig
-
- cd /tmp
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Download and install Mellanox OFED drivers and supporting
- # libraries for userspace access to Ethernet, RDMA, and Infiniband.
- # https://docs.mellanox.com/pages/releaseview.action?pageId=15049785
- wget "${MLNX_ROOT_URL}/MLNX_OFED-${MLNX_OFED_VERSION}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- tar -xf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- cd "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- ./mlnxofedinstall --user-space-only --without-fw-update --force
-
- cd /tmp
-
- # Remove Mellanox OFED archive directory and tarball
- rm -rf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- rm "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
-
- # Install additional tools
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='3'
- export OMPI_MINOR='1'
- export OMPI_REVISION='6'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Download, build, and install OpenMPI
- wget "${OMPI_ROOT_URL}/v${OMPI_MAJOR}.${OMPI_MINOR}/openmpi-${OMPI_VERSION}.tar.gz"
- tar -xf "openmpi-${OMPI_VERSION}.tar.gz"
- cd "openmpi-${OMPI_VERSION}"
- ./configure --prefix="${OMPI_INSTALL_DIR}" --with-cuda
- make all install
-
- cd /tmp
-
- # Remove OpenMPI build directory and source tarball
- rm -rf "openmpi-${OMPI_VERSION}"
- rm "openmpi-${OMPI_VERSION}.tar.gz"
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-openmpi-4.0.5 b/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-openmpi-4.0.5
deleted file mode 100644
index ab44f42..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-cuda-11.2-openmpi-4.0.5
+++ /dev/null
@@ -1,144 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2
-
-%labels
-
- APPLICATION_NAME ubuntu + cuda + openmpi
- APPLICATION_VERSION 18.04 + 11.2 + 4.0.5
- APPLICATION_URL https://www.open-mpi.org
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20210324
-
-%setup
-
-%environment
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='4'
- export OMPI_MINOR='0'
- export OMPI_REVISION='5'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
- export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Set CUDA version
- export CUDA_MAJOR='11'
- export CUDA_MINOR='2'
- export CUDA_VERSION="${CUDA_MAJOR}.${CUDA_MINOR}"
-
- # Set paths to CUDA binaries and libraries
- export CUDA_HOME="/usr/local/cuda-${CUDA_VERSION}"
- export PATH="${CUDA_HOME}/bin${PATH:+:${PATH}}"
- export LD_LIBRARY_PATH="${CUDA_HOME}/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
-
- # Install all dependencies and/or prerequisites for Mellanox OFED
- apt-get -y install bison
- apt-get -y install chrpath
- apt-get -y install debhelper
- apt-get -y install dpatch
- apt-get -y install flex
- apt-get -y install graphviz
- apt-get -y install libnl-3-dev
- apt-get -y install libnl-route-3-200
- apt-get -y install tcl-dev
- apt-get -y install tk-dev
- apt-get -y install swig
-
- cd /tmp
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Download and install Mellanox OFED drivers and supporting
- # libraries for userspace access to Ethernet, RDMA, and Infiniband.
- # https://docs.mellanox.com/pages/releaseview.action?pageId=15049785
- wget "${MLNX_ROOT_URL}/MLNX_OFED-${MLNX_OFED_VERSION}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- tar -xf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- cd "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- ./mlnxofedinstall --user-space-only --without-fw-update --force
-
- cd /tmp
-
- # Remove Mellanox OFED archive directory and tarball
- rm -rf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- rm "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
-
- # Install additional tools
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='4'
- export OMPI_MINOR='0'
- export OMPI_REVISION='5'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Download, build, and install OpenMPI
- wget "${OMPI_ROOT_URL}/v${OMPI_MAJOR}.${OMPI_MINOR}/openmpi-${OMPI_VERSION}.tar.gz"
- tar -xf "openmpi-${OMPI_VERSION}.tar.gz"
- cd "openmpi-${OMPI_VERSION}"
- ./configure --prefix="${OMPI_INSTALL_DIR}" --without-verbs --with-cuda
- make all install
-
- cd /tmp
-
- # Remove OpenMPI build directory and source tarball
- rm -rf "openmpi-${OMPI_VERSION}"
- rm "openmpi-${OMPI_VERSION}.tar.gz"
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-mvapich-2.3.2 b/definition-files/ubuntu/Singularity.ubuntu-18.04-mvapich-2.3.2
deleted file mode 100644
index 6668668..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-mvapich-2.3.2
+++ /dev/null
@@ -1,94 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04
-
-%labels
-
- APPLICATION_NAME ubuntu + mvapich
- APPLICATION_VERSION 18.04 + 2.3.2
- APPLICATION_URL https://mvapich.cse.ohio-state.edu
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20201226
-
-%setup
-
-%environment
-
- # Set paths to MVAPICH2 binaries and libraries
- export PATH="/opt/mvapich2-2.3.2/bin:${PATH}"
- export LD_LIBRARY_PATH="/opt/mvapich2-2.3.2/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Install basic drivers for user space access to Ethernet, RDMA,
- # and Infiniband. See https://community.mellanox.com/docs/DOC-2431
- apt-get -y install dkms
- apt-get -y install infiniband-diags
- apt-get -y install libibverbs-dev
- apt-get -y install ibacm
- apt-get -y install librdmacm-dev
- #apt-get -y install libmlx4-dev
- #apt-get -y install libmlx5-dev
- apt-get -y install mstflint
- #apt-get -y install libibcm-dev
- apt-get -y install libibmad-dev
- apt-get -y install libibumad-dev
- apt-get -y install opensm
- apt-get -y install srptools
-
- # Install additional tools
- apt-get -y install ibutils
- apt-get -y install ibverbs-utils
- apt-get -y install rdmacm-utils
- apt-get -y install perftest
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install libnl
- apt-get -y install libnl-3-200
- apt-get -y install libnl-route-3-200
- apt-get -y install libnl-route-3-dev
- apt-get -y install libnl-utils
-
- # Install mvapich2 (build) dependencies
- apt-get -y install bison
-
- cd /tmp
-
- # Download, build, and install mvapich2
- wget http://mvapich.cse.ohio-state.edu/download/mvapich/mv2/mvapich2-2.3.2.tar.gz
- tar -xzvf mvapich2-2.3.2.tar.gz
- cd mvapich2-2.3.2
- ./configure --prefix=/opt/mvapich2-2.3.2
- make
- make install
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.4 b/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.4
deleted file mode 100644
index 458c1ef..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.4
+++ /dev/null
@@ -1,94 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04
-
-%labels
-
- APPLICATION_NAME ubuntu + openmpi
- APPLICATION_VERSION 18.04 + 3.1.4
- APPLICATION_URL https://www.open-mpi.org
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20201226
-
-%setup
-
-%environment
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
- export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Install basic drivers for user space access to Ethernet, RDMA,
- # and Infiniband. See https://community.mellanox.com/docs/DOC-2431
- apt-get -y install dkms
-
- apt-get -y install infiniband-diags
- apt-get -y install libibverbs-dev
- apt-get -y install ibacm
- apt-get -y install librdmacm-dev
- #apt-get -y install libmlx4-dev
- #apt-get -y install libmlx5-dev
- apt-get -y install mstflint
- #apt-get -y install libibcm-dev
- apt-get -y install libibmad-dev
- apt-get -y install libibumad-dev
- apt-get -y install opensm
- apt-get -y install srptools
-
- # Install additional tools
- apt-get -y install ibutils
- apt-get -y install ibverbs-utils
- apt-get -y install rdmacm-utils
- apt-get -y install perftest
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install libnl
- apt-get -y install libnl-3-200
- apt-get -y install libnl-route-3-200
- apt-get -y install libnl-route-3-dev
- apt-get -y install libnl-utils
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Download, build, and install OpenMPI
- wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.4.tar.gz
- tar -xf openmpi-3.1.4.tar.gz
- cd openmpi-3.1.4
- ./configure --prefix=/opt/openmpi-3.1.4
- make all install
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.6 b/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.6
deleted file mode 100644
index 50be8d8..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-3.1.6
+++ /dev/null
@@ -1,134 +0,0 @@
-Bootstrap: oras
-From: ghcr.io/mkandes/naked-singularity:ubuntu-18.04
-
-%labels
-
- APPLICATION_NAME ubuntu + openmpi
- APPLICATION_VERSION 18.04 + 3.1.6
- APPLICATION_URL https://www.open-mpi.org
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20210803
-
-%setup
-
-%environment
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='3'
- export OMPI_MINOR='1'
- export OMPI_REVISION='6'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
- export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Install all dependencies and/or prerequisites for Mellanox OFED
- apt-get -y install bison
- apt-get -y install chrpath
- apt-get -y install debhelper
- apt-get -y install dpatch
- apt-get -y install flex
- apt-get -y install graphviz
- apt-get -y install libnl-3-dev
- apt-get -y install libnl-route-3-200
- apt-get -y install tcl-dev
- apt-get -y install tk-dev
- apt-get -y install swig
-
- cd /tmp
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Download and install Mellanox OFED drivers and supporting
- # libraries for userspace access to Ethernet, RDMA, and Infiniband.
- # https://docs.mellanox.com/pages/releaseview.action?pageId=15049785
- wget "${MLNX_ROOT_URL}/MLNX_OFED-${MLNX_OFED_VERSION}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- tar -xf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- cd "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- ./mlnxofedinstall --user-space-only --without-fw-update --force
-
- cd /tmp
-
- # Remove Mellanox OFED archive directory and tarball
- rm -rf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- rm "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
-
- # Install additional tools
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='3'
- export OMPI_MINOR='1'
- export OMPI_REVISION='6'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Download, build, and install OpenMPI
- wget "${OMPI_ROOT_URL}/v${OMPI_MAJOR}.${OMPI_MINOR}/openmpi-${OMPI_VERSION}.tar.gz"
- tar -xf "openmpi-${OMPI_VERSION}.tar.gz"
- cd "openmpi-${OMPI_VERSION}"
- ./configure --prefix="${OMPI_INSTALL_DIR}"
- make all install
-
- cd /tmp
-
- # Remove OpenMPI build directory and source tarball
- rm -rf "openmpi-${OMPI_VERSION}"
- rm "openmpi-${OMPI_VERSION}.tar.gz"
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
diff --git a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-4.0.5 b/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-4.0.5
deleted file mode 100644
index df94ed9..0000000
--- a/definition-files/ubuntu/Singularity.ubuntu-18.04-openmpi-4.0.5
+++ /dev/null
@@ -1,134 +0,0 @@
-Bootstrap: shub
-From: mkandes/naked-singularity:ubuntu-18.04
-
-%labels
-
- APPLICATION_NAME ubuntu + openmpi
- APPLICATION_VERSION 18.04 + 4.0.5
- APPLICATION_URL https://www.open-mpi.org
-
- AUTHOR_NAME Marty Kandes
- AUTHOR_EMAIL mkandes@sdsc.edu
-
- LAST_UPDATED 20210319
-
-%setup
-
-%environment
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='4'
- export OMPI_MINOR='0'
- export OMPI_REVISION='5'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Set paths to OpenMPI binaries and libraries
- export PATH="${OMPI_INSTALL_DIR}/bin:${PATH}"
- export LD_LIBRARY_PATH="${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH}"
-
-%post -c /bin/bash
-
- # Set operating system mirror URL
- export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
-
- # Set operating system version
- export OSVERSION='bionic'
-
- # Set system locale
- export LC_ALL='C'
-
- # Set debian frontend interface
- export DEBIAN_FRONTEND='noninteractive'
-
- # Upgrade all software packages to their latest versions
- apt-get -y update && apt-get -y upgrade
-
- # Install all dependencies and/or prerequisites for Mellanox OFED
- apt-get -y install bison
- apt-get -y install chrpath
- apt-get -y install debhelper
- apt-get -y install dpatch
- apt-get -y install flex
- apt-get -y install graphviz
- apt-get -y install libnl-3-dev
- apt-get -y install libnl-route-3-200
- apt-get -y install tcl-dev
- apt-get -y install tk-dev
- apt-get -y install swig
-
- cd /tmp
-
- # Set Mellanox OFED version, operating system, and hardware platform
- export MLNX_ROOT_URL='http://www.mellanox.com/downloads/ofed'
- export MLNX_OFED_VERSION='4.7-3.2.9.0'
- export MLNX_OS_VERSION='ubuntu18.04'
- export MLNX_PLATFORM='x86_64'
-
- # Download and install Mellanox OFED drivers and supporting
- # libraries for userspace access to Ethernet, RDMA, and Infiniband.
- # https://docs.mellanox.com/pages/releaseview.action?pageId=15049785
- wget "${MLNX_ROOT_URL}/MLNX_OFED-${MLNX_OFED_VERSION}/MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- tar -xf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
- cd "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- ./mlnxofedinstall --user-space-only --without-fw-update --force
-
- cd /tmp
-
- # Remove Mellanox OFED archive directory and tarball
- rm -rf "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}"
- rm "MLNX_OFED_LINUX-${MLNX_OFED_VERSION}-${MLNX_OS_VERSION}-${MLNX_PLATFORM}.tgz"
-
- # Install additional tools
- apt-get -y install numactl
- apt-get -y install libnuma-dev
-
- # Install OpenMPI dependencies
- apt-get -y install zlib1g-dev
-
- cd /tmp
-
- # Set OpenMPI major, minor, and revision numbers, root and
- # installation directories
- export OMPI_ROOT_URL='https://download.open-mpi.org/release/open-mpi'
- export OMPI_MAJOR='4'
- export OMPI_MINOR='0'
- export OMPI_REVISION='5'
- export OMPI_VERSION="${OMPI_MAJOR}.${OMPI_MINOR}.${OMPI_REVISION}"
- export OMPI_ROOT_DIR='/opt/openmpi'
- export OMPI_INSTALL_DIR="${OMPI_ROOT_DIR}/${OMPI_VERSION}"
-
- # Download, build, and install OpenMPI
- wget "${OMPI_ROOT_URL}/v${OMPI_MAJOR}.${OMPI_MINOR}/openmpi-${OMPI_VERSION}.tar.gz"
- tar -xf "openmpi-${OMPI_VERSION}.tar.gz"
- cd "openmpi-${OMPI_VERSION}"
- ./configure --prefix="${OMPI_INSTALL_DIR}" --without-verbs
- make all install
-
- cd /tmp
-
- # Remove OpenMPI build directory and source tarball
- rm -rf "openmpi-${OMPI_VERSION}"
- rm "openmpi-${OMPI_VERSION}.tar.gz"
-
- # Cleanup
- apt-get -y autoremove --purge
- apt-get -y clean
-
- # Update database for mlocate
- updatedb
-
-%files
-
-%runscript
-
-%test
--
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