From 5886a8cde3e7a09c5aef5091bd3bef4826faed78 Mon Sep 17 00:00:00 2001 From: MB <michael.blaschek@univie.ac.at> Date: Tue, 23 Nov 2021 22:04:03 +0100 Subject: [PATCH] MPI definitions --- .../centos/Singularity-centos8-IMPI | 23 +++++++++++++ ...ularity.miniconda3-py39-4.9.2-ubuntu-18.04 | 6 ++-- .../rocky/Singularity.rocky-8.4-OMPI | 34 +++++++++++++++++++ 3 files changed, 61 insertions(+), 2 deletions(-) create mode 100644 definition-files/centos/Singularity-centos8-IMPI create mode 100644 definition-files/rocky/Singularity.rocky-8.4-OMPI diff --git a/definition-files/centos/Singularity-centos8-IMPI b/definition-files/centos/Singularity-centos8-IMPI new file mode 100644 index 0000000..4a020e4 --- /dev/null +++ b/definition-files/centos/Singularity-centos8-IMPI @@ -0,0 +1,23 @@ +BootStrap: yum +OSVersion: 8 +MirrorURL: http://linux-ftp.jf.intel.com/pub/mirrors/centos/8/BaseOS/$basearch/os/ +Include: yum + +%environment + source /opt/intel/oneapi/mpi/latest/env/vars.sh +%post + export http_proxy=http://*** + yum repolist + yum install -y yum-utils + tee > /tmp/oneAPI.repo << EOF +[oneAPI] +name=Intel(R) oneAPI repository +baseurl=https://yum.repos.intel.com/oneapi +enabled=1 +gpgcheck=1 +repo_gpgcheck=1 +gpgkey=https://yum.repos.intel.com/intel-gpg-keys/GPG-PUB-KEY-INTEL-SW-PRODUCTS.PUB +EOF + mv /tmp/oneAPI.repo /etc/yum.repos.d + yum install -y intel-oneapi-mpi* + yum install -y sudo wget vi which numactl bzip2 tar gcc hostname util-linux redhat-lsb diff --git a/definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 b/definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 index ace3a08..085a222 100644 --- a/definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 +++ b/definition-files/miniconda/Singularity.miniconda3-py39-4.9.2-ubuntu-18.04 @@ -1,5 +1,7 @@ -Bootstrap: library -From: mblaschek/imgw/ubuntu:18.04 +# Bootstrap: library +# From: mblaschek/imgw/ubuntu:18.04 +Bootstrap: localimage +From: ubuntu.sif %labels diff --git a/definition-files/rocky/Singularity.rocky-8.4-OMPI b/definition-files/rocky/Singularity.rocky-8.4-OMPI new file mode 100644 index 0000000..d2460ae --- /dev/null +++ b/definition-files/rocky/Singularity.rocky-8.4-OMPI @@ -0,0 +1,34 @@ +BootStrap: docker +From: rockylinux/rockylinux:8.4 + +%setup + echo "Looking in directory '$SINGULARITY_ROOTFS' for /bin/sh" + if [ ! -x "$SINGULARITY_ROOTFS/bin/sh" ]; then + echo "Hrmm, this container does not have /bin/sh installed..." + exit 1 + fi + exit 0 + +%post + echo "Installing Development Tools YUM group" + yum -y groupinstall "Development Tools" + echo "Installing OpenMPI into container..." + mkdir -p /tmp/git + cd /tmp/git + # just clone that version + git clone -b v4.0.5 --depth 1 --recursive https://github.com/open-mpi/ompi.git + cd ompi + ./autogen.pl + ./configure --prefix=/usr/local + make + make install + /usr/local/bin/mpicc examples/ring_c.c -o /usr/bin/mpi_ring + cd / + rm -rf /tmp/git + exit 0 + +%runscript + exec /usr/bin/mpi_ring + +%test + /usr/local/bin/mpirun --allow-run-as-root /usr/bin/mpi_ring -- GitLab