diff --git a/README b/README
index 4142c3e1f8d74d05fbfedffe50a8479c14042446..6e6ffb518ded0e8936f63396d43c0439d0831a7a 100644
--- a/README
+++ b/README
@@ -46,7 +46,7 @@ AUTHOR
VERSION
- 0.9.1
+ 0.9.2
LAST UPDATED
diff --git a/definition-files/comet/centos/centos-cuda-openmpi.def b/definition-files/comet/centos/centos-cuda-openmpi.def
new file mode 100644
index 0000000000000000000000000000000000000000..0e3446177105181c02aa70cb3909b7468b3fb7aa
--- /dev/null
+++ b/definition-files/comet/centos/centos-cuda-openmpi.def
@@ -0,0 +1,392 @@
+Bootstrap: yum
+OSVersion: 7
+MirrorURL: http://mirror.centos.org/centos-7/7/os/x86_64/
+Include: yum
+
+%labels
+
+ APPLICATION_NAME centos + cuda + openmpi
+ APPLICATION_VERSION 7.7.1908 + 10.1.168 + 3.1.4
+ APPLICATION_URL https://www.open-mpi.org/faq/?category=runcuda
+
+ SINGULARITY_VERSION 2.6.1
+ SINGULARITY_IMAGE_SIZE 16384
+
+ AUTHOR_NAME Marty Kandes
+ AUTHOR_EMAIL mkandes@sdsc.edu
+
+ LAST_UPDATED 20200212
+
+%setup
+
+%environment
+
+ # Set system locale
+ export LC_ALL=C
+
+ # Set paths to CUDA binaries and libraries
+ export PATH="/usr/local/cuda-10.1/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-10.1/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+
+ # Set paths to OpenMPI binaries and libraries
+ export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
+
+ # Set default miniconda environment
+ export PATH="/opt/miniconda3/bin:${PATH}"
+
+%post -c /bin/bash
+
+ # Set system locale
+ export LC_ALL=C
+
+ # Add repositories
+ yum -y install epel-release
+
+ # Install system metapackages
+ yum -y groupinstall "Development Tools"
+ yum -y groupinstall "Additional Development"
+ yum -y groupinstall "Compatibility Libraries"
+
+ # Update all packages to their latest versions
+ yum -y update
+
+ # Install common packages
+ yum -y install bc
+ yum -y install cmake
+ yum -y install curl
+ yum -y install mlocate
+ yum -y install rsync
+ yum -y install time
+ yum -y install wget
+ yum -y install which
+
+ # Install expect to automate responses for interactive build questions
+ yum -y install expect
+
+ # Use /tmp to store temporary files within the container during the
+ # bootstraping process
+ cd /tmp
+
+ # Install miniconda3
+ wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
+ chmod +x Miniconda3-latest-Linux-x86_64.sh
+ ./Miniconda3-latest-Linux-x86_64.sh -b -p /opt/miniconda3
+
+ # Location of NVIDIA repositories
+ declare -r NVIDIA_ROOT_URL='http://developer.download.nvidia.com/compute'
+ declare -r CUDA_REPO_URL="${NVIDIA_ROOT_URL}/cuda/repos/rhel7/x86_64"
+ declare -r ML_REPO_URL="${NVIDIA_ROOT_URL}/machine-learning/repos/rhel7/x86_64"
+
+ # Install NVIDIA package dependencies
+ yum -y install xorg-x11-server-Xorg
+ yum -y install xorg-x11-server-common
+ yum -y install xorg-x11-apps
+ yum -y install xorg-x11-utils
+ yum -y install xorg-x11-xauth
+ yum -y install xorg-x11-xkb-utils
+ yum -y install cmake
+ yum -y install make
+ yum -y install dkms
+ yum -y install kernel-headers
+ yum -y install glibc-devel
+ yum -y install glibc-headers
+ yum -y install glibc-utils
+ yum -y install libwayland-client
+ yum -y install libwayland-server
+ yum -y install pkgconfig
+ yum -y install libvdpau
+ yum -y install libva-vdpau-driver
+ yum -y install atk
+ yum -y install atk-devel
+ yum -y install cairo
+ yum -y install cairo-devel
+ yum -y install cairo-gobject
+ yum -y install cairo-gobject-devel
+ yum -y install cairo-tools
+ yum -y install fontconfig
+ yum -y install fontconfig-devel
+ yum -y install gdk-pixbuf2
+ yum -y install gdk-pixbuf2-devel
+ yum -y install gtk3
+ yum -y install gtk3-devel
+ yum -y install gtk2
+ yum -y install gtk2-devel
+ yum -y install jansson
+ yum -y install freeglut
+ yum -y install freeglut-devel
+ yum -y install libX11
+ yum -y install libX11-devel
+ yum -y install libX11-common
+ yum -y install libXmu
+ yum -y install libXmu-devel
+ yum -y install libXi
+ yum -y install libXi-devel
+ yum -y install mesa-libGLU
+ yum -y install mesa-libGLU-devel
+ yum -y install java-latest-openjdk
+ yum -y install java-latest-openjdk-devel
+
+ yum -y install grubby
+ yum -y install libtirpc
+ yum -y install ocl-icd
+ yum -y install opencl-filesystem
+ yum -y install vulkan-filesystem
+
+ # Download NVIDIA driver, libraries, and packages
+ wget --wait=10 "https://developer.nvidia.com/compute/cuda/10.1/Prod/local_installers/cuda-repo-rhel7-10-1-local-10.1.168-418.67-1.0-1.x86_64.rpm"
+ rpm -i cuda-repo-rhel7-10-1-local-10.1.168-418.67-1.0-1.x86_64.rpm
+ yum clean all
+
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-cuda-libs-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-libs-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/dkms-nvidia-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-devel-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-persistenced-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-cuda-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-diagnostic-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-NVML-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-driver-NvFBCOpenGL-418.67-4.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-libXNVCtrl-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-libXNVCtrl-devel-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-modprobe-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-settings-418.67-1.el7.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/nvidia-xconfig-418.67-1.el7.x86_64.rpm"
+
+ # Download CUDA libraries and packages
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-compat-10-1-418.67-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-license-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-misc-headers-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvcc-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cuobjdump-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprune-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-compiler-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-driver-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cudart-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvdisasm-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gdb-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvprof-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-memcheck-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cupti-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-gpu-library-advisor-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvtx-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-sanitizer-api-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-command-line-tools-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvrtc-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvml-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvgraph-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvjpeg-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvjpeg-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusolver-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/libcublas10-10.2.0.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/libcublas-devel-10.2.0.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cufft-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-curand-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-cusparse-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-npp-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-samples-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-documentation-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-compute-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nsight-systems-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-nvvp-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-visual-tools-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-tools-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-dev-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-toolkit-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-libraries-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-drivers-418.67-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-runtime-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-demo-suite-10-1-10.1.168-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/cuda-10-1-10.1.168-1.x86_64.rpm"
+
+ wget --wait=10 "${CUDA_REPO_URL}/libcutensor1-1.0.0-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/libcutensor-devel-1.0.0-1.x86_64.rpm"
+ wget --wait=10 "${CUDA_REPO_URL}/libcutensor-doc-1.0.0-1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7-7.6.5.32-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libcudnn7-devel-7.6.5.32-1.cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libnccl-2.5.6-1+cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libnccl-devel-2.5.6-1+cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libnvinfer6-6.0.1-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libnvinfer-plugin6-6.0.1-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libnvinfer-plugin-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libnvonnxparsers6-6.0.1-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libnvonnxparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/libnvparsers6-6.0.1-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/libnvparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
+ wget --wait=10 "${ML_REPO_URL}/python3-libnvinfer-6.0.1-1.cuda10.1.x86_64.rpm"
+ wget --wait=10 "${ML_REPO_URL}/python3-libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
+ # Install NVIDIA drivers, libraries, and packages
+ rpm -i nvidia-driver-cuda-libs-418.67-4.el7.x86_64.rpm
+ rpm -i nvidia-driver-libs-418.67-4.el7.x86_64.rpm
+ yum -y install dkms-nvidia
+ yum -y install nvidia-driver
+ rpm -i nvidia-driver-NVML-418.67-4.el7.x86_64.rpm
+ rpm -i nvidia-driver-NvFBCOpenGL-418.67-4.el7.x86_64.rpm
+ rpm -i nvidia-libXNVCtrl-418.67-1.el7.x86_64.rpm
+ rpm -i nvidia-libXNVCtrl-devel-418.67-1.el7.x86_64.rpm
+ rpm -i nvidia-driver-devel-418.67-4.el7.x86_64.rpm
+ rpm -i nvidia-driver-diagnostic-418.67-4.el7.x86_64.rpm
+ rpm -i nvidia-modprobe-418.67-1.el7.x86_64.rpm
+ rpm -i nvidia-settings-418.67-1.el7.x86_64.rpm
+ rpm -i nvidia-xconfig-418.67-1.el7.x86_64.rpm
+ yum -y install nvidia-persistenced
+ yum -y install nvidia-driver-cuda
+
+ rpm -i cuda-compat-10-1-418.67-1.x86_64.rpm
+ rpm -i cuda-license-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-misc-headers-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvcc-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cuobjdump-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvprune-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-compiler-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cudart-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-driver-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cudart-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvdisasm-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-gdb-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvprof-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-memcheck-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cupti-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-gpu-library-advisor-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvtx-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-sanitizer-api-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-command-line-tools-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvrtc-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvrtc-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvml-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvgraph-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvgraph-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvjpeg-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvjpeg-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cusolver-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cusolver-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i libcublas10-10.2.0.168-1.x86_64.rpm
+ rpm -i libcublas-devel-10.2.0.168-1.x86_64.rpm
+ rpm -i cuda-cufft-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cufft-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-curand-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-curand-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cusparse-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-cusparse-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-npp-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-npp-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-samples-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-documentation-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nsight-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nsight-compute-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nsight-systems-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-nvvp-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-visual-tools-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-tools-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-libraries-dev-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-toolkit-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-libraries-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-drivers-418.67-1.x86_64.rpm
+ rpm -i cuda-runtime-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-demo-suite-10-1-10.1.168-1.x86_64.rpm
+ rpm -i cuda-10-1-10.1.168-1.x86_64.rpm
+
+ rpm -i libcutensor1-1.0.0-1.x86_64.rpm
+ rpm -i libcutensor-devel-1.0.0-1.x86_64.rpm
+ rpm -i libcutensor-doc-1.0.0-1.x86_64.rpm
+
+ rpm -i libcudnn7-7.6.5.32-1.cuda10.1.x86_64.rpm
+ rpm -i libcudnn7-devel-7.6.5.32-1.cuda10.1.x86_64.rpm
+
+ rpm -i libnccl-2.5.6-1+cuda10.1.x86_64.rpm
+ rpm -i libnccl-devel-2.5.6-1+cuda10.1.x86_64.rpm
+
+ rpm -i libnvinfer6-6.0.1-1.cuda10.1.x86_64.rpm
+ rpm -i libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm
+
+ rpm -i libnvinfer-plugin6-6.0.1-1.cuda10.1.x86_64.rpm
+ rpm -i libnvinfer-plugin-devel-6.0.1-1.cuda10.1.x86_64.rpm
+
+ rpm -i libnvonnxparsers6-6.0.1-1.cuda10.1.x86_64.rpm
+ rpm -i libnvonnxparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm
+
+ rpm -i libnvparsers6-6.0.1-1.cuda10.1.x86_64.rpm
+ rpm -i libnvparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm
+
+ rpm -i python3-libnvinfer-6.0.1-1.cuda10.1.x86_64.rpm
+ rpm -i python3-libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm
+
+ # Set paths to CUDA binaries and libraries
+ export PATH="/usr/local/cuda-10.1/bin${PATH:+:${PATH}}"
+ export LD_LIBRARY_PATH="/usr/local/cuda-10.1/lib64${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}"
+
+ # Install basic drivers for user space access to Ethernet, RDMA,
+ # and Infiniband. See https://community.mellanox.com/docs/DOC-2431
+ yum -y install dkms
+ yum -y install infiniband-diags
+ yum -y install infiniband-diags-devel
+ yum -y install libibverbs
+ yum -y install libibverbs-devel
+ yum -y install ibacm
+ yum -y install librdmacm
+ yum -y install librdmacm-devel
+ yum -y install libmlx4
+ yum -y install libmlx5
+ yum -y install msflint
+ yum -y install libibcm
+ yum -y install libibmad
+ yum -y install libibmad-devel
+ yum -y install libibumad
+ yum -y install libibumad-devel
+ yum -y install opensm
+ yum -y install srptools
+
+ # Install additional tools
+ yum -y install ibutils
+ yum -y install libibverbs-utils
+ yum -y install rdmacm-utils
+ yum -y install librdmacm-utils
+ yum -y install perftest
+ yum -y install numactl
+
+ # Install libnl
+ yum -y install libnl3
+ yum -y install libnl3-devel
+
+ # Install OpenMPI dependencies
+ yum -y install zlib
+ yum -y install zlib-devel
+
+ # Download, build, and install OpenMPI
+ wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.4.tar.gz
+ tar -xzvf openmpi-3.1.4.tar.gz
+ cd openmpi-3.1.4
+ ./configure --prefix=/opt/openmpi-3.1.4
+ make all install
+
+ # Set paths to OpenMPI binaries and libraries
+ export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
+
+ # Update database for mlocate
+ updatedb
+
+%files
+
+%runscript
+
+%test
diff --git a/definition-files/comet/centos/centos-cuda.def b/definition-files/comet/centos/centos-cuda.def
index 74552d1cdd59a6666133de878738dda383cb961c..5bdc8781ce7bc871a3bc522207fa842ee3c39e3d 100644
--- a/definition-files/comet/centos/centos-cuda.def
+++ b/definition-files/comet/centos/centos-cuda.def
@@ -15,7 +15,7 @@ Include: yum
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20200203
+ LAST_UPDATED 20200213
%setup
@@ -217,14 +217,19 @@ Include: yum
wget --wait=10 "${ML_REPO_URL}/libnvinfer6-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
wget --wait=10 "${ML_REPO_URL}/libnvinfer-plugin6-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/libnvinfer-plugin-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
wget --wait=10 "${ML_REPO_URL}/libnvonnxparsers6-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/libnvonnxparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
wget --wait=10 "${ML_REPO_URL}/libnvparsers6-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/libnvparsers-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
wget --wait=10 "${ML_REPO_URL}/python3-libnvinfer-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/python3-libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm"
+
wget --wait=10 "${ML_REPO_URL}/python-libnvinfer-6.0.1-1.cuda10.1.x86_64.rpm"
wget --wait=10 "${ML_REPO_URL}/python-libnvinfer-devel-6.0.1-1.cuda10.1.x86_64.rpm"
diff --git a/definition-files/comet/centos/centos-openmpi.def b/definition-files/comet/centos/centos-openmpi.def
index eb2f2253a3e50b7fce96573478f0206a326a3772..e88430db0a06b5c962e638942821dd63573a504c 100644
--- a/definition-files/comet/centos/centos-openmpi.def
+++ b/definition-files/comet/centos/centos-openmpi.def
@@ -6,19 +6,16 @@ Include: yum
%labels
APPLICATION_NAME centos + openmpi
- APPLICATION_VERSION 7.7.1908 + 1.8.4
+ APPLICATION_VERSION 7.7.1908 + 3.1.4
APPLICATION_URL https://www.open-mpi.org/
- SYSTEM_NAME comet
- SYSTEM_SINGULARITY_VERSION 2.6.1
- SYSTEM_URL http://www.sdsc.edu/support/user_guides/comet.html
-
- SINGULARITY_IMAGE_SIZE 8192
+ SINGULARITY_VERSION 2.6.1
+ SINGULARITY_IMAGE_SIZE 4096
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20190919
+ LAST_UPDATED 20200211
%setup
@@ -28,8 +25,8 @@ Include: yum
export LC_ALL=C
# Set paths to OpenMPI binaries and libraries
- export PATH="/opt/openmpi-1.8.4/bin:${PATH}"
- export LD_LIBRARY_PATH="/opt/openmpi-1.8.4/lib:${LD_LIBRARY_PATH}"
+ export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
# Set default miniconda environment
export PATH="/opt/miniconda3/bin:${PATH}"
@@ -47,7 +44,7 @@ Include: yum
yum -y groupinstall "Additional Development"
yum -y groupinstall "Compatibility Libraries"
- # Upgrade all packages to their latest versions
+ # Update all packages to their latest versions
yum -y update
# Install common packages
@@ -63,18 +60,10 @@ Include: yum
# Install expect to automate responses for interactive build questions
yum -y install expect
- # Make filesystem mount points
- mkdir /cvmfs /oasis /projects /scratch
-
# Use /tmp to store temporary files within the container during the
# bootstraping process
cd /tmp
- # Install miniconda2
- wget https://repo.continuum.io/miniconda/Miniconda2-latest-Linux-x86_64.sh
- chmod +x Miniconda2-latest-Linux-x86_64.sh
- ./Miniconda2-latest-Linux-x86_64.sh -b -p /opt/miniconda2
-
# Install miniconda3
wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh
chmod +x Miniconda3-latest-Linux-x86_64.sh
@@ -118,12 +107,16 @@ Include: yum
yum -y install zlib-devel
# Download, build, and install OpenMPI
- wget https://www.open-mpi.org/software/ompi/v1.8/downloads/openmpi-1.8.4.tar.gz
- tar -xzvf openmpi-1.8.4.tar.gz
- cd openmpi-1.8.4
- ./configure --prefix=/opt/openmpi-1.8.4
+ wget https://download.open-mpi.org/release/open-mpi/v3.1/openmpi-3.1.4.tar.gz
+ tar -xzvf openmpi-3.1.4.tar.gz
+ cd openmpi-3.1.4
+ ./configure --prefix=/opt/openmpi-3.1.4
make all install
+ # Set paths to OpenMPI binaries and libraries
+ export PATH="/opt/openmpi-3.1.4/bin:${PATH}"
+ export LD_LIBRARY_PATH="/opt/openmpi-3.1.4/lib:${LD_LIBRARY_PATH}"
+
# Update database for mlocate
updatedb
@@ -131,12 +124,4 @@ Include: yum
%runscript
- echo " "
- echo " __________________ __ _______________ "
- echo " -----/ ____/ __ \/ |/ / ____/_ __/ "
- echo " --/ / / / / / /|_/ / __/ / / "
- echo " / /___/ /_/ / / / / /___ / / "
- echo " \____/\____/_/ /_/_____/ /_/ "
- echo " "
-
%test