From 156c7fd3ffaee9bdc9b3071944bc788cf8872787 Mon Sep 17 00:00:00 2001
From: Marty Kandes <mkandes@sdsc.edu>
Date: Fri, 9 Jul 2021 20:20:04 +0000
Subject: [PATCH] Force upgrades of jupyter and scikit in latest TensorFlow def
file
Users reported a number of issues loading older versions of jupyter and
scikit available in apt repositories.
---
...low-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 | 15 +++++++++------
1 file changed, 9 insertions(+), 6 deletions(-)
diff --git a/definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5 b/definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5
index 7848261..b4e70d3 100644
--- a/definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5
+++ b/definition-files/tensorflow/Singularity.tensorflow-2.5.0-ubuntu-18.04-cuda-11.2-openmpi-4.0.5
@@ -10,7 +10,7 @@ From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2-openmpi-4.0.5
AUTHOR_NAME Marty Kandes
AUTHOR_EMAIL mkandes@sdsc.edu
- LAST_UPDATED 20200617
+ LAST_UPDATED 20200707
%setup
@@ -121,7 +121,9 @@ From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2-openmpi-4.0.5
apt-get -y install python3-scipy
apt-get -y install python3-pandas
apt-get -y install python3-sklearn
+ pip3 install --upgrade scikit-learn
apt-get -y install python3-skimage
+ pip3 install --upgrade scikit-image
apt-get -y install python3-statsmodels
apt-get -y install python3-matplotlib
apt-get -y install python3-plotly
@@ -134,10 +136,6 @@ From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2-openmpi-4.0.5
apt-get -y install python3-sympy
apt-get -y install python3-netcdf4
- # Install JupyterLab
- apt-get -y install jupyter
- pip3 install jupyterlab
-
# Install additioanl dependencies for TensorFlow
apt-get -y install python3-six
apt-get -y install python3-wheel
@@ -173,7 +171,7 @@ From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2-openmpi-4.0.5
export CC_OPT_FLAGS='-mtune=generic'
export TF_SET_ANDROID_WORKSPACE=0
- bazel build --local_ram_resources 2048 --local_cpu_resources 1 -c opt --config=cuda --config=numa --config=v2 --verbose_failures //tensorflow/tools/pip_package:build_pip_package
+ bazel build --local_ram_resources 8192 --local_cpu_resources 4 -c opt --config=cuda --config=numa --config=v2 --verbose_failures //tensorflow/tools/pip_package:build_pip_package
bazel-bin/tensorflow/tools/pip_package/build_pip_package tensorflow_pkg
pip3 install tensorflow_pkg/tensorflow-2.5.0-cp36-cp36m-linux_x86_64.whl
@@ -210,6 +208,11 @@ From: mkandes/naked-singularity:ubuntu-18.04-cuda-11.2-openmpi-4.0.5
pip3 install scikit-build
pip3 install -r official/requirements.txt
+ # Install JupyterLab
+ pip3 install jupyter
+ pip3 install jupyterlab
+ pip3 install --upgrade --force jupyter-console
+
# Cleanup
apt-get -y autoremove --purge
apt-get -y clean
--
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