From 0efcb9253588a0d33074b3121204730907d70b89 Mon Sep 17 00:00:00 2001
From: Marty Kandes <mkandes@sdsc.edu>
Date: Sun, 2 May 2021 22:53:27 +0000
Subject: [PATCH] Add Singularity.singularity-3.5.3
This is a testbed container to explore the potential use cases of
running Singularity within a Singularity container.
---
.../singularity/Singularity.singularity-3.5.3 | 151 ++++++++++++++++++
1 file changed, 151 insertions(+)
create mode 100644 definition-files/singularity/Singularity.singularity-3.5.3
diff --git a/definition-files/singularity/Singularity.singularity-3.5.3 b/definition-files/singularity/Singularity.singularity-3.5.3
new file mode 100644
index 0000000..b641920
--- /dev/null
+++ b/definition-files/singularity/Singularity.singularity-3.5.3
@@ -0,0 +1,151 @@
+Bootstrap: debootstrap
+MirrorURL: http://us.archive.ubuntu.com/ubuntu
+OSVersion: focal
+
+%labels
+
+ APPLICATION_NAME Singularity
+ APPLICATION_VERSION 3.5.3
+ APPLICATION_URL https://sylabs.io/guides/3.5/user-guide/
+
+ AUTHOR_NAME Marty Kandes
+ AUTHOR_EMAIL mkandes@sdsc.edu
+
+ LAST_UPDATED 20210425
+
+%setup
+
+%environment
+
+ # Set operating system mirror URL
+ export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
+
+ # Set operating system version
+ export OSVERSION='focal'
+
+ # Set system locale
+ export LC_ALL='C'
+
+ # Set debian frontend interface
+ export DEBIAN_FRONTEND='noninteractive'
+
+%post -c /bin/bash
+
+ # Set operating system mirror URL
+ export MIRRORURL='http://us.archive.ubuntu.com/ubuntu'
+
+ # Set operating system version
+ export OSVERSION='focal'
+
+ # Set system locale
+ export LC_ALL=C
+
+ # Set debian frontend interface
+ export DEBIAN_FRONTEND='noninteractive'
+
+ # Install system metapackages
+ apt-get -y install ubuntu-standard
+ apt-get -y install ubuntu-server
+
+ # Add repositories
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} main"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} universe"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} multiverse"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION} restricted"
+
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates main"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates universe"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates multiverse"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-updates restricted"
+
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports main"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports universe"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports multiverse"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-backports restricted"
+
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security main"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security universe"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security multiverse"
+ add-apt-repository -y "deb ${MIRRORURL} ${OSVERSION}-security restricted"
+
+ # Upgrade all software packages to their latest versions
+ apt-get -y update && apt-get -y upgrade
+
+ # Install common packages from 'main'
+ apt-get -y install autoconf
+ apt-get -y install automake
+ apt-get -y install build-essential
+ apt-get -y install cmake
+ apt-get -y install evince
+ apt-get -y install expect
+ apt-get -y install gfortran
+ apt-get -y install libtool
+ apt-get -y install mlocate
+ apt-get -y install pkg-config
+ apt-get -y install wget
+ apt-get -y install zip
+
+ # Install Singularity dependencies
+ apt-get -y install build-essential
+ apt-get -y install libssl-dev
+ apt-get -y install uuid-dev
+ apt-get -y install libgpgme-dev
+ apt-get -y install squashfs-tools
+ apt-get -y install libseccomp-dev
+ apt-get -y install wget
+ apt-get -y install pkg-config
+ apt-get -y install git
+ apt-get -y install cryptsetup-bin
+ apt-get -y install debootstrap
+ apt-get -y install uidmap
+
+ mkdir -p /tmp/go
+ cd /tmp/go
+
+ export CGO_ENABLED=0
+ wget https://dl.google.com/go/go1.4-bootstrap-20171003.tar.gz
+ tar -xf go1.4-bootstrap-20171003.tar.gz
+ mv go 1.4
+ cd 1.4/src
+ ./make.bash
+
+ export GOROOT_BOOTSTRAP='/tmp/go/1.4'
+
+ cd /tmp/go
+
+ export GO_VERSION='1.15.6'
+
+ export CGO_ENABLED=1
+ git clone https://go.googlesource.com/go "${GO_VERSION}"
+ cd "${GO_VERSION}"
+ git checkout "go${GO_VERSION}"
+ cd src
+ ./all.bash
+
+ export GOROOT="/tmp/go/${GO_VERSION}"
+ export PATH="${GOROOT}/bin:${PATH}"
+
+ cd /tmp
+
+ export SINGULARITY_VERSION='3.5.3'
+
+ # Installing Singularity
+ wget "https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz"
+ tar -xf "singularity-${SINGULARITY_VERSION}.tar.gz"
+ cd singularity
+ ./mconfig #--prefix=/opt/singularity
+ make -C ./builddir
+ make -C ./builddir install
+
+ # Cleanup
+ apt-get -y autoremove --purge
+ apt-get -y clean
+
+ # Update database for mlocate
+ updatedb
+
+%files
+
+%runscript
+
+%test
--
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