From eca358dfa8af364441310b89aa1acf483b280f9a Mon Sep 17 00:00:00 2001
From: Anne Philipp <anne.philipp@univie.ac.at>
Date: Sat, 1 Feb 2020 22:32:17 +0100
Subject: [PATCH] updated online documentation with links on index page
---
.../html/Documentation/Api/api_python.html | 179 +++++++--------
.../html/Documentation/Input/run.html | 8 +-
.../html/Documentation/Input/setup.html | 2 +-
Documentation/html/_modules/ControlFile.html | 27 +--
Documentation/html/_modules/EcFlexpart.html | 205 ++++++++++--------
Documentation/html/_modules/GribUtil.html | 46 ++--
.../html/_modules/MarsRetrieval.html | 5 +-
Documentation/html/_modules/UioFiles.html | 27 ++-
Documentation/html/_modules/checks.html | 51 ++---
.../html/_modules/disaggregation.html | 40 ++--
.../html/_modules/get_mars_data.html | 27 ++-
Documentation/html/_modules/install.html | 113 +++++-----
.../html/_modules/prepare_flexpart.html | 21 +-
Documentation/html/_modules/submit.html | 9 +-
Documentation/html/_modules/tools.html | 24 +-
Documentation/html/_sources/index.rst.txt | 24 +-
Documentation/html/genindex.html | 2 -
Documentation/html/index.html | 24 +-
Documentation/html/objects.inv | Bin 7175 -> 7170 bytes
Documentation/html/searchindex.js | 2 +-
For_developers/Sphinx/source/index.rst | 24 +-
21 files changed, 415 insertions(+), 445 deletions(-)
diff --git a/Documentation/html/Documentation/Api/api_python.html b/Documentation/html/Documentation/Api/api_python.html
index ed6d660..7c49ea2 100644
--- a/Documentation/html/Documentation/Api/api_python.html
+++ b/Documentation/html/Documentation/Api/api_python.html
@@ -188,33 +188,33 @@
<h1>Python’s Auto Generated Documentation<a class="headerlink" href="#python-s-auto-generated-documentation" title="Permalink to this headline">¶</a></h1>
<div class="contents local topic" id="contents">
<ul class="simple">
-<li><a class="reference internal" href="#programs" id="id1">Programs</a><ul>
-<li><a class="reference internal" href="#module-install" id="id2">install</a></li>
-<li><a class="reference internal" href="#module-submit" id="id3">submit</a></li>
+<li><a class="reference internal" href="#programs" id="id3">Programs</a><ul>
+<li><a class="reference internal" href="#module-install" id="id4">install</a></li>
+<li><a class="reference internal" href="#module-submit" id="id5">submit</a></li>
</ul>
</li>
-<li><a class="reference internal" href="#classes" id="id4">Classes</a><ul>
-<li><a class="reference internal" href="#module-ControlFile" id="id5">ControlFile</a></li>
-<li><a class="reference internal" href="#module-EcFlexpart" id="id6">EcFlexpart</a></li>
-<li><a class="reference internal" href="#module-GribUtil" id="id7">GribUtil</a></li>
-<li><a class="reference internal" href="#module-MarsRetrieval" id="id8">MarsRetrieval</a></li>
-<li><a class="reference internal" href="#module-UioFiles" id="id9">UioFiles</a></li>
+<li><a class="reference internal" href="#classes" id="id6">Classes</a><ul>
+<li><a class="reference internal" href="#module-ControlFile" id="id7">ControlFile</a></li>
+<li><a class="reference internal" href="#module-EcFlexpart" id="id8">EcFlexpart</a></li>
+<li><a class="reference internal" href="#module-GribUtil" id="id9">GribUtil</a></li>
+<li><a class="reference internal" href="#module-MarsRetrieval" id="id10">MarsRetrieval</a></li>
+<li><a class="reference internal" href="#module-UioFiles" id="id11">UioFiles</a></li>
</ul>
</li>
-<li><a class="reference internal" href="#modules" id="id10">Modules</a><ul>
-<li><a class="reference internal" href="#module-get_mars_data" id="id11">get_mars_data</a></li>
-<li><a class="reference internal" href="#module-prepare_flexpart" id="id12">prepare_flexpart</a></li>
-<li><a class="reference internal" href="#module-tools" id="id13">tools</a></li>
-<li><a class="reference internal" href="#module-checks" id="id14">checks</a></li>
-<li><a class="reference internal" href="#module-disaggregation" id="id15">disaggregation</a></li>
+<li><a class="reference internal" href="#modules" id="id12">Modules</a><ul>
+<li><a class="reference internal" href="#module-get_mars_data" id="id13">get_mars_data</a></li>
+<li><a class="reference internal" href="#module-prepare_flexpart" id="id14">prepare_flexpart</a></li>
+<li><a class="reference internal" href="#module-tools" id="id15">tools</a></li>
+<li><a class="reference internal" href="#module-checks" id="id16">checks</a></li>
+<li><a class="reference internal" href="#module-disaggregation" id="id17">disaggregation</a></li>
</ul>
</li>
</ul>
</div>
<div class="section" id="programs">
-<h2><a class="toc-backref" href="#id1">Programs</a><a class="headerlink" href="#programs" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id3">Programs</a><a class="headerlink" href="#programs" title="Permalink to this headline">¶</a></h2>
<div class="section" id="module-install">
-<span id="install"></span><h3><a class="toc-backref" href="#id2">install</a><a class="headerlink" href="#module-install" title="Permalink to this headline">¶</a></h3>
+<span id="install"></span><h3><a class="toc-backref" href="#id4">install</a><a class="headerlink" href="#module-install" title="Permalink to this headline">¶</a></h3>
<p>This script installs the flex_extract program.</p>
<p>Depending on the selected installation environment (locally or on the
ECMWF server ecgate or cca) the program extracts the commandline
@@ -318,7 +318,7 @@ if target is specified.</p>
<dl class="function">
<dt id="install.mk_compilejob">
-<code class="descclassname">install.</code><code class="descname">mk_compilejob</code><span class="sig-paren">(</span><em>makefile</em>, <em>target</em>, <em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_compilejob"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_compilejob" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">install.</code><code class="descname">mk_compilejob</code><span class="sig-paren">(</span><em>makefile</em>, <em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_compilejob"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_compilejob" title="Permalink to this definition">¶</a></dt>
<dd><p>Modifies the original job template file so that it is specified
for the user and the environment were it will be applied. Result
is stored in a new file “job.temp” in the python directory.</p>
@@ -329,7 +329,6 @@ is stored in a new file “job.temp” in the python directory.</p>
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>makefile</strong> (<em>str</em>) – Name of the makefile which should be used to compile FORTRAN
CONVERT2 program.</li>
-<li><strong>target</strong> (<em>str</em>) – The target where the installation should be done, e.g. the queue.</li>
<li><strong>ecuid</strong> (<em>str</em>) – The user id on ECMWF server.</li>
<li><strong>ecgid</strong> (<em>str</em>) – The group id on ECMWF server.</li>
<li><strong>fp_root</strong> (<em>str</em>) – Path to the root directory of FLEXPART environment or flex_extract
@@ -384,7 +383,7 @@ from ECMWF server to local gateway server.</li>
<dl class="function">
<dt id="install.mk_job_template">
-<code class="descclassname">install.</code><code class="descname">mk_job_template</code><span class="sig-paren">(</span><em>ecuid</em>, <em>ecgid</em>, <em>gateway</em>, <em>destination</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_job_template"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_job_template" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">install.</code><code class="descname">mk_job_template</code><span class="sig-paren">(</span><em>ecuid</em>, <em>ecgid</em>, <em>fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_job_template"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_job_template" title="Permalink to this definition">¶</a></dt>
<dd><p>Modifies the original job template file so that it is specified
for the user and the environment were it will be applied. Result
is stored in a new file.</p>
@@ -395,9 +394,6 @@ is stored in a new file.</p>
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>ecuid</strong> (<em>str</em>) – The user id on ECMWF server.</li>
<li><strong>ecgid</strong> (<em>str</em>) – The group id on ECMWF server.</li>
-<li><strong>gateway</strong> (<em>str</em>) – The gateway server the user is using.</li>
-<li><strong>destination</strong> (<em>str</em>) – The remote destination which is used to transfer files
-from ECMWF server to local gateway server.</li>
<li><strong>fp_root</strong> (<em>str</em>) – Path to the root directory of FLEXPART environment or flex_extract
environment.</li>
</ul>
@@ -448,7 +444,7 @@ relevant data for flex_extract.</td>
</div>
<div class="section" id="module-submit">
-<span id="submit"></span><h3><a class="toc-backref" href="#id3">submit</a><a class="headerlink" href="#module-submit" title="Permalink to this headline">¶</a></h3>
+<span id="submit"></span><h3><a class="toc-backref" href="#id5">submit</a><a class="headerlink" href="#module-submit" title="Permalink to this headline">¶</a></h3>
<p>This script allows the user to extract meteorological fields from the ECMWF.</p>
<p>It prepares the settings for retrieving the data from ECMWF servers and
process the resulting files to prepare them for the use with FLEXPART or
@@ -529,9 +525,9 @@ command line.</li>
</div>
</div>
<div class="section" id="classes">
-<h2><a class="toc-backref" href="#id4">Classes</a><a class="headerlink" href="#classes" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id6">Classes</a><a class="headerlink" href="#classes" title="Permalink to this headline">¶</a></h2>
<div class="section" id="module-ControlFile">
-<span id="controlfile"></span><h3><a class="toc-backref" href="#id5">ControlFile</a><a class="headerlink" href="#module-ControlFile" title="Permalink to this headline">¶</a></h3>
+<span id="controlfile"></span><h3><a class="toc-backref" href="#id7">ControlFile</a><a class="headerlink" href="#module-ControlFile" title="Permalink to this headline">¶</a></h3>
<dl class="class">
<dt id="ControlFile.ControlFile">
<em class="property">class </em><code class="descclassname">ControlFile.</code><code class="descname">ControlFile</code><span class="sig-paren">(</span><em>filename</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/ControlFile.html#ControlFile"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#ControlFile.ControlFile" title="Permalink to this definition">¶</a></dt>
@@ -540,7 +536,7 @@ command line.</li>
software. All necessary parameters needed to retrieve the data fields
from the MARS archive for driving FLEXPART are set in a CONTROL file.
Some specific parameters like the start and end dates can be overwritten
-by the command line parameters, but in generel all parameters needed
+by the command line parameters, but in generall all parameters needed
for a complete set of fields for FLEXPART can be set in the CONTROL file.</p>
<dl class="attribute">
<dt id="ControlFile.ControlFile.controlfile">
@@ -1205,22 +1201,6 @@ Default value is [‘${USER}’].</p>
</table>
</dd></dl>
-<dl class="attribute">
-<dt id="ControlFile.ControlFile.grib2flexpart">
-<code class="descname">grib2flexpart</code><a class="headerlink" href="#ControlFile.ControlFile.grib2flexpart" title="Permalink to this definition">¶</a></dt>
-<dd><p>Switch to select generation of preprocessed FLEXPART files “.fp”.
-If it is selected, the program grib2flexpart will try
-to convert the flex_extract output files into “.fp” format.</p>
-<table class="docutils field-list" frame="void" rules="none">
-<col class="field-name" />
-<col class="field-body" />
-<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Type:</th><td class="field-body">int 0</td>
-</tr>
-</tbody>
-</table>
-</dd></dl>
-
<dl class="attribute">
<dt id="ControlFile.ControlFile.ecstorage">
<code class="descname">ecstorage</code><a class="headerlink" href="#ControlFile.ControlFile.ecstorage" title="Permalink to this definition">¶</a></dt>
@@ -1556,7 +1536,7 @@ ELDA stream. It doubles the amount of retrieved ensemble members.</p>
<code class="descname">logicals</code><a class="headerlink" href="#ControlFile.ControlFile.logicals" title="Permalink to this definition">¶</a></dt>
<dd><p>List of the names of logical switches which controls the flow
of the program. Default list is [‘gauss’, ‘omega’, ‘omegadiff’, ‘eta’,
-‘etadiff’, ‘dpdeta’, ‘cwc’, ‘wrf’, ‘grib2flexpart’, ‘ecstorage’,
+‘etadiff’, ‘dpdeta’, ‘cwc’, ‘wrf’, ‘ecstorage’,
‘ectrans’, ‘debug’, ‘request’, ‘public’, ‘purefc’, ‘rrint’, ‘doubleelda’]</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
@@ -1641,7 +1621,7 @@ their values except the attributes “_expanded”, “exedir”,
</div>
<div class="section" id="module-EcFlexpart">
-<span id="ecflexpart"></span><h3><a class="toc-backref" href="#id6">EcFlexpart</a><a class="headerlink" href="#module-EcFlexpart" title="Permalink to this headline">¶</a></h3>
+<span id="ecflexpart"></span><h3><a class="toc-backref" href="#id8">EcFlexpart</a><a class="headerlink" href="#module-EcFlexpart" title="Permalink to this headline">¶</a></h3>
<dl class="class">
<dt id="EcFlexpart.EcFlexpart">
<em class="property">class </em><code class="descclassname">EcFlexpart.</code><code class="descname">EcFlexpart</code><span class="sig-paren">(</span><em>c</em>, <em>fluxes=False</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/EcFlexpart.html#EcFlexpart"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#EcFlexpart.EcFlexpart" title="Permalink to this definition">¶</a></dt>
@@ -2210,7 +2190,7 @@ command line.</li>
</div>
<div class="section" id="module-GribUtil">
-<span id="gributil"></span><h3><a class="toc-backref" href="#id7">GribUtil</a><a class="headerlink" href="#module-GribUtil" title="Permalink to this headline">¶</a></h3>
+<span id="gributil"></span><h3><a class="toc-backref" href="#id9">GribUtil</a><a class="headerlink" href="#module-GribUtil" title="Permalink to this headline">¶</a></h3>
<dl class="class">
<dt id="GribUtil.GribUtil">
<em class="property">class </em><code class="descclassname">GribUtil.</code><code class="descname">GribUtil</code><span class="sig-paren">(</span><em>filenames</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil" title="Permalink to this definition">¶</a></dt>
@@ -2225,7 +2205,7 @@ class objects without having to think about how the actual GRIB API
tools have to be arranged.</p>
<dl class="method">
<dt id="GribUtil.GribUtil.copy_dummy_msg">
-<code class="descname">copy_dummy_msg</code><span class="sig-paren">(</span><em>filename_in</em>, <em>selectWhere=True</em>, <em>keynames=[]</em>, <em>keyvalues=[]</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.copy_dummy_msg"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.copy_dummy_msg" title="Permalink to this definition">¶</a></dt>
+<code class="descname">copy_dummy_msg</code><span class="sig-paren">(</span><em>filename_in</em>, <em>keynames</em>, <em>keyvalues</em>, <em>selectwhere=True</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.copy_dummy_msg"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.copy_dummy_msg" title="Permalink to this definition">¶</a></dt>
<dd><p>Add the content of another input grib file to the objects file but
only messages corresponding to keys/values passed to the function.
The selectWhere switch decides if to copy the keys equal to (True) or
@@ -2236,11 +2216,11 @@ different to (False) the keynames/keyvalues list passed to the function.</p>
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first last simple">
<li><strong>filename_in</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – Filename of the input file to read the grib messages from.</li>
-<li><strong>selectWhere</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if to copy the keynames and values equal to (True) or
+<li><strong>selectwhere</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if to copy the keynames and values equal to (True) or
different to (False) the keynames/keyvalues list passed to the
function. Default is True.</li>
-<li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keynames. Default is an empty list.</li>
-<li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keyvalues. Default is an empty list.</li>
+<li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames.</li>
+<li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues.</li>
<li><strong>filemode</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Sets the mode for the output file. Default is “wb”.</li>
</ul>
</td>
@@ -2251,7 +2231,7 @@ function. Default is True.</li>
<dl class="method">
<dt id="GribUtil.GribUtil.get_keys">
-<code class="descname">get_keys</code><span class="sig-paren">(</span><em>keynames</em>, <em>wherekeynames=[]</em>, <em>wherekeyvalues=[]</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.get_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.get_keys" title="Permalink to this definition">¶</a></dt>
+<code class="descname">get_keys</code><span class="sig-paren">(</span><em>keynames</em>, <em>wherekeynames</em>, <em>wherekeyvalues</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.get_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.get_keys" title="Permalink to this definition">¶</a></dt>
<dd><p>Get keyvalues for a given list of keynames a where statement
can be given (list of key and list of values)</p>
<table class="docutils field-list" frame="void" rules="none">
@@ -2260,8 +2240,8 @@ can be given (list of key and list of values)</p>
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
<li><strong>keynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames.</li>
-<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Default value is an empty list.</li>
-<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Default value is an empty list.</li>
+<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of key names for indexing grib message parameter.</li>
+<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of key values corresponding the key names.</li>
</ul>
</td>
</tr>
@@ -2277,7 +2257,7 @@ can be given (list of key and list of values)</p>
<dl class="method">
<dt id="GribUtil.GribUtil.index">
-<code class="descname">index</code><span class="sig-paren">(</span><em>index_keys=['mars'], index_file='my.idx'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.index" title="Permalink to this definition">¶</a></dt>
+<code class="descname">index</code><span class="sig-paren">(</span><em>index_keys</em>, <em>index_file='my.idx'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.index"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.index" title="Permalink to this definition">¶</a></dt>
<dd><p>Create index file from a list of files if it does not exist or
read an index file.</p>
<table class="docutils field-list" frame="void" rules="none">
@@ -2285,9 +2265,8 @@ read an index file.</p>
<col class="field-body" />
<tbody valign="top">
<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>index_keys</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Contains the list of key parameter names from
-which the index is to be created.
-Default is a list with a single entry string “mars”.</li>
+<li><strong>index_keys</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – Contains the list of key parameter names from
+which the index is to be created.</li>
<li><strong>index_file</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Filename where the indices are stored.
Default is “my.idx”.</li>
</ul>
@@ -2305,7 +2284,7 @@ Default is “my.idx”.</li>
<dl class="method">
<dt id="GribUtil.GribUtil.set_keys">
-<code class="descname">set_keys</code><span class="sig-paren">(</span><em>fromfile</em>, <em>keynames</em>, <em>keyvalues</em>, <em>wherekeynames=[]</em>, <em>wherekeyvalues=[]</em>, <em>strict=False</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
+<code class="descname">set_keys</code><span class="sig-paren">(</span><em>fromfile</em>, <em>keynames</em>, <em>keyvalues</em>, <em>wherekeynames</em>, <em>wherekeyvalues</em>, <em>filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
<dd><p>Opens the file to read the grib messages and then write
the selected messages (with wherekeys) to a new output file.
Also, the keyvalues of the passed list of keynames are set.</p>
@@ -2319,13 +2298,8 @@ Also, the keyvalues of the passed list of keynames are set.</p>
Default is an empty list.</li>
<li><strong>keyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues to set in the selected messages.
Default is an empty list.</li>
-<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keynames to select correct message.
-Default value is an empty list.</li>
-<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – List of keyvalues for keynames to select correct message.
-Default value is an empty list.</li>
-<li><strong>strict</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">boolean</span></code>, optional) – Decides if everything from keynames and keyvalues
-is written out the grib file (False) or only those
-meeting the where statement (True). Default is False.</li>
+<li><strong>wherekeynames</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keynames to select correct message.</li>
+<li><strong>wherekeyvalues</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">list</span></code> of <code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>) – List of keyvalues for keynames to select correct message.</li>
<li><strong>filemode</strong> (<code class="xref py py-obj docutils literal notranslate"><span class="pre">string</span></code>, optional) – Sets the mode for the output file. Default is “wb”.</li>
</ul>
</td>
@@ -2338,7 +2312,7 @@ meeting the where statement (True). Default is False.</li>
</div>
<div class="section" id="module-MarsRetrieval">
-<span id="marsretrieval"></span><h3><a class="toc-backref" href="#id8">MarsRetrieval</a><a class="headerlink" href="#module-MarsRetrieval" title="Permalink to this headline">¶</a></h3>
+<span id="marsretrieval"></span><h3><a class="toc-backref" href="#id10">MarsRetrieval</a><a class="headerlink" href="#module-MarsRetrieval" title="Permalink to this headline">¶</a></h3>
<dl class="class">
<dt id="MarsRetrieval.MarsRetrieval">
<em class="property">class </em><code class="descclassname">MarsRetrieval.</code><code class="descname">MarsRetrieval</code><span class="sig-paren">(</span><em>server</em>, <em>public</em>, <em>marsclass='EA'</em>, <em>dataset=''</em>, <em>type=''</em>, <em>levtype=''</em>, <em>levelist=''</em>, <em>repres=''</em>, <em>date=''</em>, <em>resol=''</em>, <em>stream=''</em>, <em>area=''</em>, <em>time=''</em>, <em>step=''</em>, <em>expver='1'</em>, <em>number=''</em>, <em>accuracy=''</em>, <em>grid=''</em>, <em>gaussian=''</em>, <em>target=''</em>, <em>param=''</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/MarsRetrieval.html#MarsRetrieval"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#MarsRetrieval.MarsRetrieval" title="Permalink to this definition">¶</a></dt>
@@ -2691,7 +2665,7 @@ standard output.</p>
</div>
<div class="section" id="module-UioFiles">
-<span id="uiofiles"></span><h3><a class="toc-backref" href="#id9">UioFiles</a><a class="headerlink" href="#module-UioFiles" title="Permalink to this headline">¶</a></h3>
+<span id="uiofiles"></span><h3><a class="toc-backref" href="#id11">UioFiles</a><a class="headerlink" href="#module-UioFiles" title="Permalink to this headline">¶</a></h3>
<dl class="class">
<dt id="UioFiles.UioFiles">
<em class="property">class </em><code class="descclassname">UioFiles.</code><code class="descname">UioFiles</code><span class="sig-paren">(</span><em>path</em>, <em>pattern</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/UioFiles.html#UioFiles"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#UioFiles.UioFiles" title="Permalink to this definition">¶</a></dt>
@@ -2716,7 +2690,7 @@ they can be deleted.</p>
<dl class="attribute">
<dt id="UioFiles.UioFiles.pattern">
<code class="descname">pattern</code><a class="headerlink" href="#UioFiles.UioFiles.pattern" title="Permalink to this definition">¶</a></dt>
-<dd><p>Regular expression pattern. For example: ‘*.grb’</p>
+<dd><p>Regular expression pattern. For example: ‘<a href="#id1"><span class="problematic" id="id2">*</span></a>.grb’</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
@@ -2752,9 +2726,9 @@ they can be deleted.</p>
</div>
</div>
<div class="section" id="modules">
-<h2><a class="toc-backref" href="#id10">Modules</a><a class="headerlink" href="#modules" title="Permalink to this headline">¶</a></h2>
+<h2><a class="toc-backref" href="#id12">Modules</a><a class="headerlink" href="#modules" title="Permalink to this headline">¶</a></h2>
<div class="section" id="module-get_mars_data">
-<span id="get-mars-data"></span><h3><a class="toc-backref" href="#id11">get_mars_data</a><a class="headerlink" href="#module-get_mars_data" title="Permalink to this headline">¶</a></h3>
+<span id="get-mars-data"></span><h3><a class="toc-backref" href="#id13">get_mars_data</a><a class="headerlink" href="#module-get_mars_data" title="Permalink to this headline">¶</a></h3>
<p>This script extracts MARS data from ECMWF servers.</p>
<p>At first, the necessary parameters from command line and CONTROL files are
extracted. They define the data set to be extracted from MARS.</p>
@@ -2777,7 +2751,26 @@ Read the documentation for usage instructions.</p>
<dl class="function">
<dt id="get_mars_data.check_dates_for_nonflux_fc_times">
<code class="descclassname">get_mars_data.</code><code class="descname">check_dates_for_nonflux_fc_times</code><span class="sig-paren">(</span><em>types</em>, <em>times</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/get_mars_data.html#check_dates_for_nonflux_fc_times"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#get_mars_data.check_dates_for_nonflux_fc_times" title="Permalink to this definition">¶</a></dt>
-<dd></dd></dl>
+<dd><p>Checks if the time 18UTC corresponds to forecast field.</p>
+<table class="docutils field-list" frame="void" rules="none">
+<col class="field-name" />
+<col class="field-body" />
+<tbody valign="top">
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
+<li><strong>types</strong> (<em>list of str</em>) – List of field types.</li>
+<li><strong>times</strong> (<em>list of str</em><em> or </em><em>str</em>) – The time in hours of the field.</li>
+</ul>
+</td>
+</tr>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"></p>
+</td>
+</tr>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">True or False</p>
+</td>
+</tr>
+</tbody>
+</table>
+</dd></dl>
<dl class="function">
<dt id="get_mars_data.do_retrievement">
@@ -2845,7 +2838,7 @@ collect accumulation data (flux data) with the exact start and end date
(disaggregation will be done for the exact time period with
boundary conditions)</p>
<p>Since for basetime the extraction contains the 12 hours upfront,
-if basetime is 0, the starting date has to be the day before and</p>
+if basetime is 0, the starting date has to be the day before</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
@@ -2928,7 +2921,7 @@ matching the pattern.</p>
</div>
<div class="section" id="module-prepare_flexpart">
-<span id="prepare-flexpart"></span><h3><a class="toc-backref" href="#id12">prepare_flexpart</a><a class="headerlink" href="#module-prepare_flexpart" title="Permalink to this headline">¶</a></h3>
+<span id="prepare-flexpart"></span><h3><a class="toc-backref" href="#id14">prepare_flexpart</a><a class="headerlink" href="#module-prepare_flexpart" title="Permalink to this headline">¶</a></h3>
<p>This script prepares the final version of the grib files which are
then used by FLEXPART.</p>
<p>It converts the bunch of grib files extracted via get_mars_data before,
@@ -2981,7 +2974,7 @@ command line.</li>
</div>
<div class="section" id="module-tools">
-<span id="tools"></span><h3><a class="toc-backref" href="#id13">tools</a><a class="headerlink" href="#module-tools" title="Permalink to this headline">¶</a></h3>
+<span id="tools"></span><h3><a class="toc-backref" href="#id15">tools</a><a class="headerlink" href="#module-tools" title="Permalink to this headline">¶</a></h3>
<p>This module contains a collection of diverse tasks within flex_extract.</p>
<dl class="function">
<dt id="tools.clean_up">
@@ -3490,7 +3483,7 @@ parameter ids in the format of integer.</p>
</div>
<div class="section" id="module-checks">
-<span id="checks"></span><h3><a class="toc-backref" href="#id14">checks</a><a class="headerlink" href="#module-checks" title="Permalink to this headline">¶</a></h3>
+<span id="checks"></span><h3><a class="toc-backref" href="#id16">checks</a><a class="headerlink" href="#module-checks" title="Permalink to this headline">¶</a></h3>
<p>This module contains check methods for the CONTROL paramaters.</p>
<dl class="function">
<dt id="checks.check_accmaxstep">
@@ -3845,25 +3838,17 @@ This is the maximum step for non flux (accumulated) forecast data.</p>
<dl class="function">
<dt id="checks.check_number">
-<code class="descclassname">checks.</code><code class="descname">check_number</code><span class="sig-paren">(</span><em>number</em>, <em>mailfail</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_number"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_number" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">checks.</code><code class="descname">check_number</code><span class="sig-paren">(</span><em>number</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_number"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_number" title="Permalink to this definition">¶</a></dt>
<dd><p>Check for correct string format of ensemble member numbers.</p>
<table class="docutils field-list" frame="void" rules="none">
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>number</strong> (<em>str</em>) – List of ensemble member forecast runs.</li>
-<li><strong>mailfail</strong> (<em>list of str</em>) – Contains all email addresses which should be notified.
-It might also contain just the ecmwf user name which will trigger
-mailing to the associated email address for this user.</li>
-</ul>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>number</strong> (<em>str</em>) – List of ensemble member forecast runs.</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"><strong>number</strong> – String with list of ensemble member forecast runs. E.g. ‘01/02/03/04’</p>
-</td>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><strong>number</strong> – String with list of ensemble member forecast runs. E.g. ‘01/02/03/04’</td>
</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">str</p>
-</td>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">str</td>
</tr>
</tbody>
</table>
@@ -4004,7 +3989,7 @@ transfer through ectrans. E.g. <a class="reference external" href="mailto:name&#
<dl class="function">
<dt id="checks.check_step">
-<code class="descclassname">checks.</code><code class="descname">check_step</code><span class="sig-paren">(</span><em>step</em>, <em>mailfail</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_step"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_step" title="Permalink to this definition">¶</a></dt>
+<code class="descclassname">checks.</code><code class="descname">check_step</code><span class="sig-paren">(</span><em>step</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_step"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_step" title="Permalink to this definition">¶</a></dt>
<dd><p>Checks on step format and convert into a list of steps.</p>
<p>If the steps were defined with “to” and “by” they are converted into
a list of steps. If the steps were set in a string, it is
@@ -4013,20 +3998,12 @@ converted into a list.</p>
<col class="field-name" />
<col class="field-body" />
<tbody valign="top">
-<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><ul class="first simple">
-<li><strong>step</strong> (<em>list of str</em><em> or </em><em>str</em>) – Specifies the forecast time step from forecast base time.
-Valid values are hours (HH) from forecast base time.</li>
-<li><strong>mailfail</strong> (<em>list of str</em>) – Contains all email addresses which should be notified.
-It might also contain just the ecmwf user name which will trigger
-mailing to the associated email address for this user.</li>
-</ul>
-</td>
+<tr class="field-odd field"><th class="field-name">Parameters:</th><td class="field-body"><strong>step</strong> (<em>list of str</em><em> or </em><em>str</em>) – Specifies the forecast time step from forecast base time.
+Valid values are hours (HH) from forecast base time.</td>
</tr>
-<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><p class="first"><strong>step</strong> – List of forecast steps in format e.g. [001, 002, …]</p>
-</td>
+<tr class="field-even field"><th class="field-name">Returns:</th><td class="field-body"><strong>step</strong> – List of forecast steps in format e.g. [001, 002, …]</td>
</tr>
-<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body"><p class="first last">list of str</p>
-</td>
+<tr class="field-odd field"><th class="field-name">Return type:</th><td class="field-body">list of str</td>
</tr>
</tbody>
</table>
@@ -4078,7 +4055,7 @@ Valid values are hours (HH) from forecast base time.</li>
</div>
<div class="section" id="module-disaggregation">
-<span id="disaggregation"></span><h3><a class="toc-backref" href="#id15">disaggregation</a><a class="headerlink" href="#module-disaggregation" title="Permalink to this headline">¶</a></h3>
+<span id="disaggregation"></span><h3><a class="toc-backref" href="#id17">disaggregation</a><a class="headerlink" href="#module-disaggregation" title="Permalink to this headline">¶</a></h3>
<p>Disaggregation of deaccumulated flux data from an ECMWF model FG field.</p>
<dl class="docutils">
<dt>Initially the flux data to be concerned are:</dt>
diff --git a/Documentation/html/Documentation/Input/run.html b/Documentation/html/Documentation/Input/run.html
index e7bb568..d9a9b17 100644
--- a/Documentation/html/Documentation/Input/run.html
+++ b/Documentation/html/Documentation/Input/run.html
@@ -507,8 +507,8 @@ the command line parameters and the so-called <code class="docutils literal notr
<span class="c1"># THE USER HAS TO SPECIFY THESE PARAMETERS:</span>
<span class="nv">QUEUE</span><span class="o">=</span><span class="s1">'ecgate'</span>
-<span class="nv">START_DATE</span><span class="o">=</span>None
-<span class="nv">END_DATE</span><span class="o">=</span>None
+<span class="nv">START_DATE</span><span class="o">=</span><span class="m">20190101</span>
+<span class="nv">END_DATE</span><span class="o">=</span><span class="m">20190101</span>
<span class="nv">DATE_CHUNK</span><span class="o">=</span>None
<span class="nv">JOB_CHUNK</span><span class="o">=</span><span class="m">3</span>
<span class="nv">BASETIME</span><span class="o">=</span>None
@@ -520,8 +520,8 @@ the command line parameters and the so-called <code class="docutils literal notr
<span class="nv">PP_ID</span><span class="o">=</span>None
<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">'job.temp'</span>
<span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">'CONTROL_EA5'</span>
-<span class="nv">DEBUG</span><span class="o">=</span><span class="m">0</span>
-<span class="nv">REQUEST</span><span class="o">=</span><span class="m">0</span>
+<span class="nv">DEBUG</span><span class="o">=</span><span class="m">1</span>
+<span class="nv">REQUEST</span><span class="o">=</span><span class="m">2</span>
<span class="nv">PUBLIC</span><span class="o">=</span><span class="m">0</span>
<span class="c1"># -----------------------------------------------------------------</span>
diff --git a/Documentation/html/Documentation/Input/setup.html b/Documentation/html/Documentation/Input/setup.html
index 6bf0a9a..410473d 100644
--- a/Documentation/html/Documentation/Input/setup.html
+++ b/Documentation/html/Documentation/Input/setup.html
@@ -366,7 +366,7 @@ It calls the top-level Python script <code class="docutils literal notranslate">
<span class="c1"># THE USER HAS TO SPECIFY THESE PARAMETERS</span>
<span class="c1">#</span>
<span class="nv">TARGET</span><span class="o">=</span><span class="s1">'ecgate'</span>
-<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">'makefile.eccodes'</span>
+<span class="nv">MAKEFILE</span><span class="o">=</span><span class="s1">'makefile_ecgate'</span>
<span class="nv">ECUID</span><span class="o">=</span><span class="s1">'km4a'</span>
<span class="nv">ECGID</span><span class="o">=</span><span class="s1">'at'</span>
<span class="nv">GATEWAY</span><span class="o">=</span><span class="s1">'srvx8.img.univie.ac.at'</span>
diff --git a/Documentation/html/_modules/ControlFile.html b/Documentation/html/_modules/ControlFile.html
index d9a507c..4b5f326 100644
--- a/Documentation/html/_modules/ControlFile.html
+++ b/Documentation/html/_modules/ControlFile.html
@@ -199,14 +199,13 @@
<span class="kn">from</span> <span class="nn">__future__</span> <span class="k">import</span> <span class="n">print_function</span>
<span class="kn">import</span> <span class="nn">os</span>
-<span class="kn">import</span> <span class="nn">re</span>
<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
<span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">'../'</span><span class="p">)</span>
<span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">silent_remove</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span>
<span class="kn">from</span> <span class="nn">Mods.checks</span> <span class="k">import</span> <span class="p">(</span><span class="n">check_grid</span><span class="p">,</span> <span class="n">check_area</span><span class="p">,</span> <span class="n">check_levels</span><span class="p">,</span> <span class="n">check_purefc</span><span class="p">,</span>
<span class="n">check_step</span><span class="p">,</span> <span class="n">check_mail</span><span class="p">,</span> <span class="n">check_queue</span><span class="p">,</span> <span class="n">check_pathes</span><span class="p">,</span>
<span class="n">check_dates</span><span class="p">,</span> <span class="n">check_maxstep</span><span class="p">,</span> <span class="n">check_type</span><span class="p">,</span> <span class="n">check_request</span><span class="p">,</span>
@@ -214,6 +213,7 @@
<span class="n">check_acctime</span><span class="p">,</span> <span class="n">check_accmaxstep</span><span class="p">,</span> <span class="n">check_time</span><span class="p">,</span>
<span class="n">check_logicals_type</span><span class="p">,</span> <span class="n">check_len_type_time_step</span><span class="p">,</span>
<span class="n">check_addpar</span><span class="p">,</span> <span class="n">check_job_chunk</span><span class="p">,</span> <span class="n">check_number</span><span class="p">)</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># CLASS</span>
@@ -226,7 +226,7 @@
<span class="sd"> software. All necessary parameters needed to retrieve the data fields</span>
<span class="sd"> from the MARS archive for driving FLEXPART are set in a CONTROL file.</span>
<span class="sd"> Some specific parameters like the start and end dates can be overwritten</span>
-<span class="sd"> by the command line parameters, but in generel all parameters needed</span>
+<span class="sd"> by the command line parameters, but in generall all parameters needed</span>
<span class="sd"> for a complete set of fields for FLEXPART can be set in the CONTROL file.</span>
<span class="sd"> Attributes</span>
@@ -399,11 +399,6 @@
<span class="sd"> The email addresses should be seperated by a comma.</span>
<span class="sd"> Default value is ['${USER}'].</span>
-<span class="sd"> grib2flexpart : int 0</span>
-<span class="sd"> Switch to select generation of preprocessed FLEXPART files ".fp".</span>
-<span class="sd"> If it is selected, the program grib2flexpart will try</span>
-<span class="sd"> to convert the flex_extract output files into ".fp" format.</span>
-
<span class="sd"> ecstorage : int</span>
<span class="sd"> Switch to select storage of FLEXPART ready output files</span>
<span class="sd"> in the ECFS file system. Default value is 0.</span>
@@ -495,7 +490,7 @@
<span class="sd"> logicals : list of str</span>
<span class="sd"> List of the names of logical switches which controls the flow</span>
<span class="sd"> of the program. Default list is ['gauss', 'omega', 'omegadiff', 'eta',</span>
-<span class="sd"> 'etadiff', 'dpdeta', 'cwc', 'wrf', 'grib2flexpart', 'ecstorage',</span>
+<span class="sd"> 'etadiff', 'dpdeta', 'cwc', 'wrf', 'ecstorage',</span>
<span class="sd"> 'ectrans', 'debug', 'request', 'public', 'purefc', 'rrint', 'doubleelda']</span>
<span class="sd"> '''</span>
@@ -561,7 +556,6 @@
<span class="bp">self</span><span class="o">.</span><span class="n">ecfsdir</span> <span class="o">=</span> <span class="s1">'ectmp:/$</span><span class="si">{USER}</span><span class="s1">/econdemand/'</span>
<span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'$</span><span class="si">{USER}</span><span class="s1">'</span><span class="p">]</span>
<span class="bp">self</span><span class="o">.</span><span class="n">mailops</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'$</span><span class="si">{USER}</span><span class="s1">'</span><span class="p">]</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">grib2flexpart</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">ecstorage</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">ectrans</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_INPUT_DIR</span>
@@ -586,7 +580,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">doubleelda</span> <span class="o">=</span> <span class="mi">0</span>
<span class="bp">self</span><span class="o">.</span><span class="n">logicals</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'gauss'</span><span class="p">,</span> <span class="s1">'omega'</span><span class="p">,</span> <span class="s1">'omegadiff'</span><span class="p">,</span> <span class="s1">'eta'</span><span class="p">,</span> <span class="s1">'etadiff'</span><span class="p">,</span>
- <span class="s1">'dpdeta'</span><span class="p">,</span> <span class="s1">'cwc'</span><span class="p">,</span> <span class="s1">'wrf'</span><span class="p">,</span> <span class="s1">'grib2flexpart'</span><span class="p">,</span> <span class="s1">'ecstorage'</span><span class="p">,</span>
+ <span class="s1">'dpdeta'</span><span class="p">,</span> <span class="s1">'cwc'</span><span class="p">,</span> <span class="s1">'wrf'</span><span class="p">,</span> <span class="s1">'ecstorage'</span><span class="p">,</span>
<span class="s1">'ectrans'</span><span class="p">,</span> <span class="s1">'debug'</span><span class="p">,</span> <span class="s1">'oper'</span><span class="p">,</span> <span class="s1">'request'</span><span class="p">,</span> <span class="s1">'public'</span><span class="p">,</span>
<span class="s1">'purefc'</span><span class="p">,</span> <span class="s1">'rrint'</span><span class="p">,</span> <span class="s1">'doubleelda'</span><span class="p">]</span>
@@ -763,7 +757,9 @@
<span class="bp">self</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">ecgid</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">check_pathes</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">flexextractdir</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">outputdir</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">flexextractdir</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="n">check_dates</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">start_date</span><span class="p">,</span>
<span class="bp">self</span><span class="o">.</span><span class="n">end_date</span><span class="p">)</span>
@@ -772,7 +768,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">level</span> <span class="o">=</span> <span class="n">check_levels</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">)</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="n">check_step</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">step</span> <span class="o">=</span> <span class="n">check_step</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">maxstep</span> <span class="o">=</span> <span class="n">check_maxstep</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">maxstep</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
@@ -810,7 +806,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">job_chunk</span> <span class="o">=</span> <span class="n">check_job_chunk</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">job_chunk</span><span class="p">)</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">number</span> <span class="o">=</span> <span class="n">check_number</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">number</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">mailfail</span><span class="p">)</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">number</span> <span class="o">=</span> <span class="n">check_number</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">number</span><span class="p">)</span>
<span class="k">return</span></div>
@@ -856,7 +852,6 @@
<span class="n">l</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s2">"</span><span class="si">%s</span><span class="s2"> </span><span class="si">%s</span><span class="se">\n</span><span class="s2">"</span> <span class="o">%</span> <span class="n">item</span><span class="p">)</span>
<span class="k">return</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">l</span><span class="p">)</span></div></div>
-
</pre></div>
</div>
diff --git a/Documentation/html/_modules/EcFlexpart.html b/Documentation/html/_modules/EcFlexpart.html
index 2f9bfe7..a7d385c 100644
--- a/Documentation/html/_modules/EcFlexpart.html
+++ b/Documentation/html/_modules/EcFlexpart.html
@@ -214,6 +214,10 @@
<span class="c1"># this is disabled because for this specific case its an error in pylint</span>
<span class="c1">#pylint: disable=consider-using-enumerate</span>
<span class="c1"># this is not useful in this case</span>
+<span class="c1">#pylint: disable=unsubscriptable-object</span>
+<span class="c1"># this error is a bug</span>
+<span class="c1">#pylint: disable=ungrouped-imports</span>
+<span class="c1"># not necessary that we group the imports</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># MODULES</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
@@ -223,21 +227,21 @@
<span class="kn">import</span> <span class="nn">sys</span>
<span class="kn">import</span> <span class="nn">glob</span>
<span class="kn">import</span> <span class="nn">shutil</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
<span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">'../'</span><span class="p">)</span>
<span class="kn">import</span> <span class="nn">_config</span>
<span class="kn">from</span> <span class="nn">Classes.GribUtil</span> <span class="k">import</span> <span class="n">GribUtil</span>
<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">init128</span><span class="p">,</span> <span class="n">to_param_id</span><span class="p">,</span> <span class="n">silent_remove</span><span class="p">,</span> <span class="n">product</span><span class="p">,</span>
- <span class="n">my_error</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">get_informations</span><span class="p">,</span> <span class="n">get_dimensions</span><span class="p">,</span>
+ <span class="n">my_error</span><span class="p">,</span> <span class="n">get_informations</span><span class="p">,</span> <span class="n">get_dimensions</span><span class="p">,</span>
<span class="n">execute_subprocess</span><span class="p">,</span> <span class="n">to_param_id_with_tablenumber</span><span class="p">,</span>
<span class="n">generate_retrieval_period_boundary</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Classes.MarsRetrieval</span> <span class="k">import</span> <span class="n">MarsRetrieval</span>
<span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
<span class="kn">import</span> <span class="nn">Mods.disaggregation</span> <span class="k">as</span> <span class="nn">disaggregation</span>
-
+<span class="c1">#pylint: enable=wrong-import-position</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># CLASS</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
@@ -478,11 +482,16 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
+ <span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span>
+ <span class="c1"># need to retrieve forecasts for step 000 in case of pure forecast</span>
+ <span class="n">steps</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">steps</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)</span>
+
<span class="bp">self</span><span class="o">.</span><span class="n">types</span><span class="p">[</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">acctype</span><span class="p">)]</span> <span class="o">=</span> <span class="p">{</span><span class="s1">'times'</span><span class="p">:</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">acctime</span><span class="p">),</span>
- <span class="s1">'steps'</span><span class="p">:</span> <span class="s1">'</span><span class="si">{}</span><span class="s1">/to/</span><span class="si">{}</span><span class="s1">/by/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">,</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">accmaxstep</span><span class="p">,</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">dtime</span><span class="p">)}</span>
+ <span class="s1">'steps'</span><span class="p">:</span> <span class="n">steps</span><span class="p">}</span>
<span class="k">return</span>
<span class="k">def</span> <span class="nf">_create_params</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">gauss</span><span class="p">,</span> <span class="n">eta</span><span class="p">,</span> <span class="n">omega</span><span class="p">,</span> <span class="n">cwc</span><span class="p">,</span> <span class="n">wrf</span><span class="p">):</span>
@@ -562,8 +571,8 @@
<span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">[</span><span class="s1">'OG__ML'</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+=</span> <span class="s1">'/U/V'</span>
<span class="k">else</span><span class="p">:</span> <span class="c1"># GAUSS and ETA</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Warning: Collecting etadot and parameters for gaussian grid '</span>
- <span class="s1">'is a very costly parameter combination, '</span>
- <span class="s1">'use this combination only for debugging!'</span><span class="p">)</span>
+ <span class="s1">'is a very costly parameter combination, '</span>
+ <span class="s1">'use this combination only for debugging!'</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">[</span><span class="s1">'GG__SL'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'Q'</span><span class="p">,</span> <span class="s1">'ML'</span><span class="p">,</span> <span class="s1">'1'</span><span class="p">,</span>
<span class="s1">'</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">((</span><span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">)</span> <span class="o">+</span> <span class="mi">1</span><span class="p">)</span> <span class="o">//</span> <span class="mi">2</span><span class="p">)]</span>
<span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">[</span><span class="s1">'GG__ML'</span><span class="p">]</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'U/V/D/ETADOT'</span><span class="p">,</span> <span class="s1">'ML'</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">glevelist</span><span class="p">,</span>
@@ -576,7 +585,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">params</span><span class="p">[</span><span class="s1">'OG__ML'</span><span class="p">][</span><span class="mi">0</span><span class="p">]</span> <span class="o">+=</span> <span class="s1">'/CLWC/CIWC'</span>
<span class="c1"># ADDITIONAL FIELDS FOR FLEXPART-WRF MODEL (IF QUESTIONED)</span>
- <span class="c1"># -----------------------------------------------------------------------</span>
+ <span class="c1"># ----------------------------------------------------------------------</span>
<span class="k">if</span> <span class="n">wrf</span><span class="p">:</span>
<span class="c1"># @WRF</span>
<span class="c1"># THIS IS NOT YET CORRECTLY IMPLEMENTED !!!</span>
@@ -871,7 +880,8 @@
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'step'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'000'</span>
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">dates</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'target'</span><span class="p">]</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_mk_targetname</span><span class="p">(</span><span class="s1">''</span><span class="p">,</span>
- <span class="n">pk</span><span class="p">,</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">])</span>
+ <span class="n">pk</span><span class="p">,</span>
+ <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">])</span>
<span class="k">elif</span> <span class="n">pk</span> <span class="o">==</span> <span class="s1">'OG_OROLSM__SL'</span> <span class="ow">and</span> <span class="n">oro</span><span class="p">:</span>
<span class="k">continue</span>
<span class="k">if</span> <span class="n">pk</span> <span class="o">==</span> <span class="s1">'GG__SL'</span> <span class="ow">and</span> <span class="n">pv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">==</span> <span class="s1">'Q'</span><span class="p">:</span>
@@ -913,7 +923,7 @@
<span class="c1"># -------------- flux data ----------------------------</span>
<span class="k">if</span> <span class="s1">'acc'</span> <span class="ow">in</span> <span class="n">pk</span><span class="p">:</span>
<span class="n">startdate</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
- <span class="n">enddate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
+ <span class="n">enddate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'/'</span><span class="o">.</span><span class="n">join</span><span class="p">([</span><span class="n">startdate</span><span class="p">,</span>
<span class="s1">'to'</span><span class="p">,</span>
<span class="n">enddate</span><span class="p">])</span>
@@ -937,14 +947,14 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_start_retrievement</span><span class="p">(</span><span class="n">request</span><span class="p">,</span> <span class="n">retr_param_dict</span><span class="p">)</span>
<span class="k">elif</span> <span class="bp">self</span><span class="o">.</span><span class="n">basetime</span> <span class="o">==</span> <span class="mi">0</span><span class="p">:</span>
- <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> \
- <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span> <span class="o">-</span> <span class="n">t24h</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
+<span class="c1"># retr_param_dict['date'] = \</span>
+<span class="c1"># datetime.strftime(elimit - t24h, '%Y%m%d')</span>
<span class="n">timesave</span> <span class="o">=</span> <span class="s1">''</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'time'</span><span class="p">])</span>
- <span class="k">if</span> <span class="p">(</span><span class="s1">'/'</span> <span class="ow">in</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'time'</span><span class="p">]</span> <span class="ow">and</span>
- <span class="n">pk</span> <span class="o">!=</span> <span class="s1">'OG_OROLSM__SL'</span> <span class="ow">and</span>
- <span class="s1">'acc'</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">pk</span> <span class="p">)</span> <span class="p">:</span>
+ <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="s1">'/'</span> <span class="ow">in</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'time'</span><span class="p">],</span>
+ <span class="n">pk</span> <span class="o">!=</span> <span class="s1">'OG_OROLSM__SL'</span><span class="p">,</span>
+ <span class="s1">'acc'</span> <span class="ow">not</span> <span class="ow">in</span> <span class="n">pk</span><span class="p">]):</span>
<span class="n">times</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'time'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
<span class="n">steps</span> <span class="o">=</span> <span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'step'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
@@ -955,9 +965,9 @@
<span class="k">else</span><span class="p">:</span>
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'time'</span><span class="p">]</span> <span class="o">=</span> <span class="n">times</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span>
- <span class="k">if</span> <span class="p">(</span><span class="n">pk</span> <span class="o">!=</span> <span class="s1">'OG_OROLSM__SL'</span> <span class="ow">and</span>
- <span class="nb">int</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'step'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">and</span>
- <span class="nb">int</span><span class="p">(</span><span class="n">timesave</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">):</span>
+ <span class="k">if</span> <span class="nb">all</span><span class="p">([</span><span class="n">pk</span> <span class="o">!=</span> <span class="s1">'OG_OROLSM__SL'</span><span class="p">,</span>
+ <span class="nb">int</span><span class="p">(</span><span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'step'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">,</span>
+ <span class="nb">int</span><span class="p">(</span><span class="n">timesave</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span> <span class="o">==</span> <span class="mi">0</span><span class="p">]):</span>
<span class="n">retr_param_dict</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span> <span class="o">=</span> \
<span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">elimit</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
@@ -971,7 +981,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">_start_retrievement</span><span class="p">(</span><span class="n">request</span><span class="p">,</span> <span class="n">retr_param_dict</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'ERROR: Basetime has an invalid value '</span>
- <span class="s1">'-> </span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">basetime</span><span class="p">)))</span>
+ <span class="s1">'-> </span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">basetime</span><span class="p">)))</span>
<span class="k">if</span> <span class="n">request</span> <span class="o">==</span> <span class="mi">0</span> <span class="ow">or</span> <span class="n">request</span> <span class="o">==</span> <span class="mi">2</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'MARS retrieve done ... '</span><span class="p">)</span>
@@ -1021,23 +1031,23 @@
<span class="n">maxb</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="nb">round</span><span class="p">((</span><span class="n">area</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">area</span><span class="p">[</span><span class="mi">2</span><span class="p">])</span> <span class="o">/</span> <span class="n">grid</span><span class="p">[</span><span class="mi">0</span><span class="p">]))</span> <span class="o">+</span> <span class="mi">1</span>
<span class="n">stream</span> <span class="o">=</span> <span class="n">namelist_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
- <span class="n">maxl</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">maxl</span><span class="p">),</span>
- <span class="n">maxb</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">maxb</span><span class="p">),</span>
- <span class="n">mlevel</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">),</span>
- <span class="n">mlevelist</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">),</span>
- <span class="n">mnauf</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">),</span>
- <span class="n">metapar</span> <span class="o">=</span> <span class="s1">'77'</span><span class="p">,</span>
- <span class="n">rlo0</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
- <span class="n">rlo1</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">3</span><span class="p">]),</span>
- <span class="n">rla0</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">2</span><span class="p">]),</span>
- <span class="n">rla1</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
- <span class="n">momega</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omega</span><span class="p">),</span>
- <span class="n">momegadiff</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omegadiff</span><span class="p">),</span>
- <span class="n">mgauss</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">gauss</span><span class="p">),</span>
- <span class="n">msmooth</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">smooth</span><span class="p">),</span>
- <span class="n">meta</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">eta</span><span class="p">),</span>
- <span class="n">metadiff</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">etadiff</span><span class="p">),</span>
- <span class="n">mdpdeta</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dpdeta</span><span class="p">)</span>
+ <span class="n">maxl</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">maxl</span><span class="p">),</span>
+ <span class="n">maxb</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">maxb</span><span class="p">),</span>
+ <span class="n">mlevel</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">level</span><span class="p">),</span>
+ <span class="n">mlevelist</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">levelist</span><span class="p">),</span>
+ <span class="n">mnauf</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">resol</span><span class="p">),</span>
+ <span class="n">metapar</span><span class="o">=</span><span class="s1">'77'</span><span class="p">,</span>
+ <span class="n">rlo0</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">1</span><span class="p">]),</span>
+ <span class="n">rlo1</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">3</span><span class="p">]),</span>
+ <span class="n">rla0</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">2</span><span class="p">]),</span>
+ <span class="n">rla1</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">area</span><span class="p">[</span><span class="mi">0</span><span class="p">]),</span>
+ <span class="n">momega</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omega</span><span class="p">),</span>
+ <span class="n">momegadiff</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">omegadiff</span><span class="p">),</span>
+ <span class="n">mgauss</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">gauss</span><span class="p">),</span>
+ <span class="n">msmooth</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">smooth</span><span class="p">),</span>
+ <span class="n">meta</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">eta</span><span class="p">),</span>
+ <span class="n">metadiff</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">etadiff</span><span class="p">),</span>
+ <span class="n">mdpdeta</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dpdeta</span><span class="p">)</span>
<span class="p">)</span>
<span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -1089,7 +1099,7 @@
<span class="sd"> '''</span>
<span class="kn">import</span> <span class="nn">numpy</span> <span class="k">as</span> <span class="nn">np</span>
- <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
+ <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
<span class="n">codes_get_values</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span> <span class="n">codes_set</span><span class="p">,</span>
<span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span>
<span class="n">codes_index_release</span><span class="p">)</span>
@@ -1214,7 +1224,6 @@
<span class="n">time</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">)</span> <span class="o">//</span> <span class="mi">100</span> <span class="c1"># integer</span>
<span class="n">step</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">'step'</span><span class="p">)</span> <span class="c1"># integer</span>
<span class="n">ctime</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{:0>2}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">time</span><span class="p">)</span>
- <span class="n">cstep</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{:0>3}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">step</span><span class="p">)</span>
<span class="n">t_date</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">cdate</span> <span class="o">+</span> <span class="n">ctime</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span>
<span class="n">t_dt</span> <span class="o">=</span> <span class="n">t_date</span> <span class="o">+</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="n">step</span><span class="p">)</span>
@@ -1293,7 +1302,7 @@
<span class="c1"># do de-accumulation</span>
<span class="n">deac_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">]</span><span class="o">.</span><span class="n">append</span><span class="p">(</span>
<span class="p">(</span><span class="n">orig_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">][</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">orig_vals</span><span class="p">[</span><span class="n">parId</span><span class="p">][</span><span class="o">-</span><span class="mi">2</span><span class="p">])</span> <span class="o">/</span>
- <span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
+ <span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
<span class="c1"># store precipitation if new disaggregation method is selected</span>
<span class="c1"># only the exact days are needed</span>
@@ -1493,12 +1502,12 @@
<span class="k">if</span> <span class="n">maxnum</span><span class="p">:</span>
<span class="k">for</span> <span class="n">inum</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">maxnum</span><span class="p">):</span>
<span class="k">for</span> <span class="n">ix</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ni</span><span class="o">*</span><span class="n">nj</span><span class="p">):</span>
- <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">inum</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
<span class="k">for</span> <span class="n">ix</span> <span class="ow">in</span> <span class="nb">range</span><span class="p">(</span><span class="n">ni</span><span class="o">*</span><span class="n">nj</span><span class="p">):</span>
- <span class="n">lsp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
- <span class="n">cp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span><span class="n">ix</span><span class="p">,:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">lsp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">lsp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
+ <span class="n">cp_new_np</span><span class="p">[</span><span class="mi">0</span><span class="p">,</span> <span class="n">ix</span><span class="p">,</span> <span class="p">:]</span> <span class="o">=</span> <span class="n">disaggregation</span><span class="o">.</span><span class="n">IA3</span><span class="p">(</span><span class="n">cp_np</span><span class="p">[</span><span class="n">ix</span><span class="p">,</span> <span class="p">:])[:</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span>
<span class="c1"># write to grib files (full/orig times to flux file and inbetween</span>
<span class="c1"># times with step 1 and 2, respectively)</span>
@@ -1563,46 +1572,52 @@
<span class="c1"># write original time step to flux file as usual</span>
<span class="n">fluxfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="n">fluxfilename</span><span class="p">))</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
<span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="p">]],</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]],</span>
<span class="p">)</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="p">]]</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]]</span>
<span class="p">)</span>
<span class="c1"># rr for first subgrid point is identified by step = 1</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'1'</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
- <span class="p">)</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'1'</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
+ <span class="p">)</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'1'</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
- <span class="p">)</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'1'</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">1</span><span class="p">]]</span>
+ <span class="p">)</span>
<span class="c1"># rr for second subgrid point is identified by step = 2</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'2'</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
- <span class="p">)</span>
- <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span> <span class="n">strict</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'2'</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
+ <span class="p">)</span>
+ <span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span><span class="s1">'date'</span><span class="p">,</span><span class="s1">'time'</span><span class="p">,</span><span class="s1">'stepRange'</span><span class="p">,</span><span class="s1">'values'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span><span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'2'</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,:,</span><span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
- <span class="p">)</span>
+ <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
+ <span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="s1">'2'</span><span class="p">,</span> <span class="n">cp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="o">+</span><span class="mi">2</span><span class="p">]]</span>
+ <span class="p">)</span>
<span class="n">it</span> <span class="o">=</span> <span class="n">it</span> <span class="o">+</span> <span class="mi">3</span> <span class="c1"># jump to next original time step in rr fields</span>
<span class="k">return</span>
@@ -1624,13 +1639,13 @@
<span class="sd"> '''</span>
- <span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span><span class="s1">'rr_grib_dummy.grb'</span><span class="p">))</span>
+ <span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span> <span class="s1">'rr_grib_dummy.grb'</span><span class="p">))</span>
<span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">)</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">)</span>
<span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">)</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">)</span>
<span class="k">return</span>
@@ -1662,7 +1677,7 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
- <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
+ <span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_index_select</span><span class="p">,</span> <span class="n">codes_get</span><span class="p">,</span>
<span class="n">codes_get_values</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span> <span class="n">codes_set</span><span class="p">,</span>
<span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_new_from_index</span><span class="p">,</span>
<span class="n">codes_index_release</span><span class="p">)</span>
@@ -1744,22 +1759,20 @@
<span class="n">timestamp</span> <span class="o">+=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="nb">int</span><span class="p">(</span><span class="n">cstep</span><span class="p">))</span>
<span class="n">cdate_hour</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="n">timestamp</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span>
+ <span class="c1"># if basetime is used, adapt start/end date period</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
+ <span class="n">time_delta</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="mi">12</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
+ <span class="n">start_period</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
+ <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span> <span class="o">-</span> <span class="n">time_delta</span>
+ <span class="n">end_period</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
+ <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span>
+
<span class="c1"># skip all temporary times</span>
<span class="c1"># which are outside the retrieval period</span>
<span class="k">if</span> <span class="n">timestamp</span> <span class="o"><</span> <span class="n">start_period</span> <span class="ow">or</span> \
<span class="n">timestamp</span> <span class="o">></span> <span class="n">end_period</span><span class="p">:</span>
<span class="k">continue</span>
- <span class="c1"># if the timestamp is out of basetime start/end date period,</span>
- <span class="c1"># skip this specific product</span>
- <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">basetime</span> <span class="ow">is</span> <span class="ow">not</span> <span class="kc">None</span><span class="p">:</span>
- <span class="n">time_delta</span> <span class="o">=</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">hours</span><span class="o">=</span><span class="mi">12</span><span class="o">-</span><span class="nb">int</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">dtime</span><span class="p">))</span>
- <span class="n">start_time</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
- <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span> <span class="o">-</span> <span class="n">time_delta</span>
- <span class="n">end_time</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">basetime</span><span class="p">),</span>
- <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">%H'</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">timestamp</span> <span class="o"><</span> <span class="n">start_time</span> <span class="ow">or</span> <span class="n">timestamp</span> <span class="o">></span> <span class="n">end_time</span><span class="p">:</span>
- <span class="k">continue</span>
<span class="c1"># @WRF</span>
<span class="c1"># THIS IS NOT YET CORRECTLY IMPLEMENTED !!!</span>
@@ -1781,7 +1794,6 @@
<span class="k">break</span>
<span class="n">paramId</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">'paramId'</span><span class="p">)</span>
<span class="n">gridtype</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">'gridType'</span><span class="p">)</span>
- <span class="n">levtype</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="s1">'typeOfLevel'</span><span class="p">)</span>
<span class="k">if</span> <span class="n">paramId</span> <span class="o">==</span> <span class="mi">77</span><span class="p">:</span> <span class="c1"># ETADOT</span>
<span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fdict</span><span class="p">[</span><span class="s1">'21'</span><span class="p">])</span>
<span class="k">elif</span> <span class="n">paramId</span> <span class="o">==</span> <span class="mi">130</span><span class="p">:</span> <span class="c1"># T</span>
@@ -1865,7 +1877,7 @@
<span class="c1"># Fortran program creates file fort.15 (with u,v,etadot,t,sp,q)</span>
<span class="n">execute_subprocess</span><span class="p">([</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">exedir</span><span class="p">,</span>
- <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
<span class="n">error_msg</span><span class="o">=</span><span class="s1">'FORTRAN PROGRAM FAILED!'</span><span class="p">)</span><span class="c1">#shell=True)</span>
<span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">pwd</span><span class="p">)</span>
@@ -1894,7 +1906,9 @@
<span class="c1"># create outputfile and copy all data from intermediate files</span>
<span class="c1"># to the outputfile (final GRIB input files for FLEXPART)</span>
<span class="n">orolsm</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span> <span class="o">+</span>
- <span class="s1">'/OG_OROLSM__SL.*.'</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span> <span class="s1">'*'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
+ <span class="s1">'/OG_OROLSM__SL.*.'</span> <span class="o">+</span>
+ <span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span>
+ <span class="s1">'*'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
<span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">'flux'</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">cwc</span><span class="p">:</span>
<span class="n">flist</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'fort.15'</span><span class="p">,</span> <span class="n">fluxfile</span><span class="p">,</span> <span class="s1">'fort.16'</span><span class="p">,</span> <span class="n">orolsm</span><span class="p">]</span>
@@ -1944,19 +1958,19 @@
<span class="sd"> '''</span>
<span class="kn">from</span> <span class="nn">eccodes</span> <span class="k">import</span> <span class="p">(</span><span class="n">codes_grib_new_from_file</span><span class="p">,</span> <span class="n">codes_get_array</span><span class="p">,</span>
- <span class="n">codes_set_array</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span> <span class="n">codes_set_values</span><span class="p">,</span>
- <span class="n">codes_set</span><span class="p">,</span> <span class="n">codes_write</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">)</span>
+ <span class="n">codes_set_array</span><span class="p">,</span> <span class="n">codes_release</span><span class="p">,</span>
+ <span class="n">codes_set</span><span class="p">,</span> <span class="n">codes_write</span><span class="p">)</span>
<span class="c1"># max number</span>
<span class="n">maxnum</span> <span class="o">=</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">number</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span>
<span class="c1"># get a list of all prepared output files with control forecast (CF)</span>
- <span class="n">CF_filelist</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">'*.N000'</span><span class="p">)</span>
- <span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">)</span>
+ <span class="n">cf_filelist</span> <span class="o">=</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">path</span><span class="p">,</span> <span class="n">prefix</span> <span class="o">+</span> <span class="s1">'*.N000'</span><span class="p">)</span>
+ <span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span> <span class="o">=</span> <span class="nb">sorted</span><span class="p">(</span><span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">cffile</span> <span class="ow">in</span> <span class="n">CF_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>
+ <span class="k">for</span> <span class="n">cffile</span> <span class="ow">in</span> <span class="n">cf_filelist</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>
<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">cffile</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
- <span class="n">cfvalues</span><span class="o">=</span><span class="p">[]</span>
+ <span class="n">cfvalues</span> <span class="o">=</span> <span class="p">[]</span>
<span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
<span class="n">fid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
<span class="k">if</span> <span class="n">fid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
@@ -2061,7 +2075,6 @@
<span class="s1">'TO OUTPUTDIR FAILED!'</span><span class="p">)</span>
<span class="k">return</span></div></div>
-
</pre></div>
</div>
diff --git a/Documentation/html/_modules/GribUtil.html b/Documentation/html/_modules/GribUtil.html
index a798b8d..e1fc92c 100644
--- a/Documentation/html/_modules/GribUtil.html
+++ b/Documentation/html/_modules/GribUtil.html
@@ -229,7 +229,7 @@
<span class="k">return</span>
-<div class="viewcode-block" id="GribUtil.get_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.get_keys">[docs]</a> <span class="k">def</span> <span class="nf">get_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[]):</span>
+<div class="viewcode-block" id="GribUtil.get_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.get_keys">[docs]</a> <span class="k">def</span> <span class="nf">get_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span> <span class="n">wherekeyvalues</span><span class="p">):</span>
<span class="sd">'''Get keyvalues for a given list of keynames a where statement</span>
<span class="sd"> can be given (list of key and list of values)</span>
@@ -238,11 +238,11 @@
<span class="sd"> keynames : :obj:`list` of :obj:`string`</span>
<span class="sd"> List of keynames.</span>
-<span class="sd"> wherekeynames : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd"> Default value is an empty list.</span>
+<span class="sd"> wherekeynames : :obj:`list` of :obj:`string`</span>
+<span class="sd"> List of key names for indexing grib message parameter.</span>
-<span class="sd"> wherekeyvalues : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd"> Default value is an empty list.</span>
+<span class="sd"> wherekeyvalues : :obj:`list` of :obj:`string`</span>
+<span class="sd"> List of key values corresponding the key names.</span>
<span class="sd"> Return</span>
<span class="sd"> ------</span>
@@ -283,8 +283,8 @@
<span class="k">return</span> <span class="n">return_list</span></div>
-<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a> <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span>
- <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[],</span> <span class="n">strict</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a> <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span>
+ <span class="n">wherekeyvalues</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">):</span>
<span class="sd">'''Opens the file to read the grib messages and then write</span>
<span class="sd"> the selected messages (with wherekeys) to a new output file.</span>
<span class="sd"> Also, the keyvalues of the passed list of keynames are set.</span>
@@ -302,18 +302,11 @@
<span class="sd"> List of keyvalues to set in the selected messages.</span>
<span class="sd"> Default is an empty list.</span>
-<span class="sd"> wherekeynames : :obj:`list` of :obj:`string`, optional</span>
+<span class="sd"> wherekeynames : :obj:`list` of :obj:`string`</span>
<span class="sd"> List of keynames to select correct message.</span>
-<span class="sd"> Default value is an empty list.</span>
-<span class="sd"> wherekeyvalues : :obj:`list` of :obj:`string`, optional</span>
+<span class="sd"> wherekeyvalues : :obj:`list` of :obj:`string`</span>
<span class="sd"> List of keyvalues for keynames to select correct message.</span>
-<span class="sd"> Default value is an empty list.</span>
-
-<span class="sd"> strict : :obj:`boolean`, optional</span>
-<span class="sd"> Decides if everything from keynames and keyvalues</span>
-<span class="sd"> is written out the grib file (False) or only those</span>
-<span class="sd"> meeting the where statement (True). Default is False.</span>
<span class="sd"> filemode : :obj:`string`, optional</span>
<span class="sd"> Sets the mode for the output file. Default is "wb".</span>
@@ -361,8 +354,8 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="GribUtil.copy_dummy_msg"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.copy_dummy_msg">[docs]</a> <span class="k">def</span> <span class="nf">copy_dummy_msg</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename_in</span><span class="p">,</span> <span class="n">selectWhere</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span>
- <span class="n">keynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">keyvalues</span><span class="o">=</span><span class="p">[],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.copy_dummy_msg"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.copy_dummy_msg">[docs]</a> <span class="k">def</span> <span class="nf">copy_dummy_msg</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">filename_in</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span>
+ <span class="n">selectwhere</span><span class="o">=</span><span class="kc">True</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">):</span>
<span class="sd">'''Add the content of another input grib file to the objects file but</span>
<span class="sd"> only messages corresponding to keys/values passed to the function.</span>
<span class="sd"> The selectWhere switch decides if to copy the keys equal to (True) or</span>
@@ -373,16 +366,16 @@
<span class="sd"> filename_in : :obj:`string`</span>
<span class="sd"> Filename of the input file to read the grib messages from.</span>
-<span class="sd"> selectWhere : :obj:`boolean`, optional</span>
+<span class="sd"> selectwhere : :obj:`boolean`, optional</span>
<span class="sd"> Decides if to copy the keynames and values equal to (True) or</span>
<span class="sd"> different to (False) the keynames/keyvalues list passed to the</span>
<span class="sd"> function. Default is True.</span>
-<span class="sd"> keynames : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd"> List of keynames. Default is an empty list.</span>
+<span class="sd"> keynames : :obj:`list` of :obj:`string`</span>
+<span class="sd"> List of keynames.</span>
-<span class="sd"> keyvalues : :obj:`list` of :obj:`string`, optional</span>
-<span class="sd"> List of keyvalues. Default is an empty list.</span>
+<span class="sd"> keyvalues : :obj:`list` of :obj:`string`</span>
+<span class="sd"> List of keyvalues.</span>
<span class="sd"> filemode : :obj:`string`, optional</span>
<span class="sd"> Sets the mode for the output file. Default is "wb".</span>
@@ -415,7 +408,7 @@
<span class="k">if</span> <span class="ow">not</span> <span class="n">codes_is_defined</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Key was not defined"</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">selectWhere</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">selectwhere</span><span class="p">:</span>
<span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">==</span>
<span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">))))</span>
<span class="k">else</span><span class="p">:</span>
@@ -433,16 +426,15 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="GribUtil.index"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.index">[docs]</a> <span class="k">def</span> <span class="nf">index</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">index_keys</span><span class="o">=</span><span class="p">[</span><span class="s2">"mars"</span><span class="p">],</span> <span class="n">index_file</span><span class="o">=</span><span class="s2">"my.idx"</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.index"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.index">[docs]</a> <span class="k">def</span> <span class="nf">index</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">index_keys</span><span class="p">,</span> <span class="n">index_file</span><span class="o">=</span><span class="s2">"my.idx"</span><span class="p">):</span>
<span class="sd">'''Create index file from a list of files if it does not exist or</span>
<span class="sd"> read an index file.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
-<span class="sd"> index_keys: :obj:`list` of :obj:`string`, optional</span>
+<span class="sd"> index_keys: :obj:`list` of :obj:`string`</span>
<span class="sd"> Contains the list of key parameter names from</span>
<span class="sd"> which the index is to be created.</span>
-<span class="sd"> Default is a list with a single entry string "mars".</span>
<span class="sd"> index_file: :obj:`string`, optional</span>
<span class="sd"> Filename where the indices are stored.</span>
diff --git a/Documentation/html/_modules/MarsRetrieval.html b/Documentation/html/_modules/MarsRetrieval.html
index c7f3fe9..5bc24a5 100644
--- a/Documentation/html/_modules/MarsRetrieval.html
+++ b/Documentation/html/_modules/MarsRetrieval.html
@@ -203,8 +203,10 @@
<span class="kn">import</span> <span class="nn">traceback</span>
<span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">'../'</span><span class="p">)</span>
<span class="kn">import</span> <span class="nn">_config</span>
+<span class="c1">#pylint: disable=invalid-name</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">ec_api</span> <span class="o">=</span> <span class="kc">True</span>
<span class="kn">import</span> <span class="nn">ecmwfapi</span>
@@ -216,6 +218,8 @@
<span class="kn">import</span> <span class="nn">cdsapi</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="n">cds_api</span> <span class="o">=</span> <span class="kc">False</span>
+<span class="c1">#pylint: enable=invalid-name</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># CLASS</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
@@ -671,7 +675,6 @@
<span class="k">except</span> <span class="ne">Exception</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'</span><span class="se">\n\n</span><span class="s1">MARS Request failed!'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
- <span class="n">tb</span> <span class="o">=</span> <span class="n">sys</span><span class="o">.</span><span class="n">exc_info</span><span class="p">()[</span><span class="mi">2</span><span class="p">]</span>
<span class="nb">print</span><span class="p">(</span><span class="n">traceback</span><span class="o">.</span><span class="n">format_exc</span><span class="p">())</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">()</span>
diff --git a/Documentation/html/_modules/UioFiles.html b/Documentation/html/_modules/UioFiles.html
index 89797a2..83e8caf 100644
--- a/Documentation/html/_modules/UioFiles.html
+++ b/Documentation/html/_modules/UioFiles.html
@@ -203,15 +203,17 @@
<span class="kn">import</span> <span class="nn">fnmatch</span>
<span class="c1"># software specific modules from flex_extract</span>
+<span class="c1">#pylint: disable=wrong-import-position</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="s1">'../'</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">silent_remove</span><span class="p">,</span> <span class="n">get_list_as_string</span>
+<span class="c1">#pylint: enable=wrong-import-position</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># CLASS</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<div class="viewcode-block" id="UioFiles"><a class="viewcode-back" href="../Documentation/Api/api_python.html#UioFiles.UioFiles">[docs]</a><span class="k">class</span> <span class="nc">UioFiles</span><span class="p">(</span><span class="nb">object</span><span class="p">):</span>
- <span class="sd">'''Collection of files matching a specific pattern.</span>
+ <span class="sd">"""Collection of files matching a specific pattern.</span>
<span class="sd"> The pattern can contain regular expressions for the files.</span>
<span class="sd"> The files are listed and can be transformed to a single string or</span>
@@ -223,16 +225,16 @@
<span class="sd"> Directory where to list the files.</span>
<span class="sd"> pattern : str</span>
-<span class="sd"> Regular expression pattern. For example: '\*.grb'</span>
+<span class="sd"> Regular expression pattern. For example: '*.grb'</span>
<span class="sd"> files : list of str</span>
<span class="sd"> List of files matching the pattern in the path.</span>
-<span class="sd"> '''</span>
+<span class="sd"> """</span>
<span class="c1"># --------------------------------------------------------------------------</span>
<span class="c1"># CLASS METHODS</span>
<span class="c1"># --------------------------------------------------------------------------</span>
<span class="k">def</span> <span class="nf">__init__</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">,</span> <span class="n">pattern</span><span class="p">):</span>
- <span class="sd">'''Assignes a specific pattern for these files.</span>
+ <span class="sd">"""Assignes a specific pattern for these files.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
@@ -240,12 +242,12 @@
<span class="sd"> Directory where to list the files.</span>
<span class="sd"> pattern : str</span>
-<span class="sd"> Regular expression pattern. For example: '\*.grb'</span>
+<span class="sd"> Regular expression pattern. For example: '*.grb'</span>
<span class="sd"> Return</span>
<span class="sd"> ------</span>
-<span class="sd"> '''</span>
+<span class="sd"> """</span>
<span class="bp">self</span><span class="o">.</span><span class="n">path</span> <span class="o">=</span> <span class="n">path</span>
<span class="bp">self</span><span class="o">.</span><span class="n">pattern</span> <span class="o">=</span> <span class="n">pattern</span>
@@ -257,7 +259,7 @@
<span class="k">def</span> <span class="nf">_list_files</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">path</span><span class="p">):</span>
- <span class="sd">'''Lists all files in the directory with the matching</span>
+ <span class="sd">"""Lists all files in the directory with the matching</span>
<span class="sd"> regular expression pattern.</span>
<span class="sd"> Parameters</span>
@@ -268,11 +270,12 @@
<span class="sd"> Return</span>
<span class="sd"> ------</span>
-<span class="sd"> '''</span>
+<span class="sd"> """</span>
<span class="c1"># Get the absolute path</span>
<span class="n">path</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">path</span><span class="p">)</span>
<span class="c1"># get all files in the dir and subdir as absolut path</span>
+ <span class="c1"># pylint: disable=W0612</span>
<span class="k">for</span> <span class="n">root</span><span class="p">,</span> <span class="n">dirnames</span><span class="p">,</span> <span class="n">filenames</span> <span class="ow">in</span> <span class="n">os</span><span class="o">.</span><span class="n">walk</span><span class="p">(</span><span class="n">path</span><span class="p">):</span>
<span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span> <span class="n">fnmatch</span><span class="o">.</span><span class="n">filter</span><span class="p">(</span><span class="n">filenames</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">pattern</span><span class="p">):</span>
<span class="bp">self</span><span class="o">.</span><span class="n">files</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">root</span><span class="p">,</span> <span class="n">filename</span><span class="p">))</span>
@@ -281,7 +284,7 @@
<span class="k">def</span> <span class="nf">__str__</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
- <span class="sd">'''Converts the list of files into a single string.</span>
+ <span class="sd">"""Converts the list of files into a single string.</span>
<span class="sd"> The entries are sepereated by "," sign.</span>
<span class="sd"> Parameters</span>
@@ -291,7 +294,7 @@
<span class="sd"> ------</span>
<span class="sd"> files_string : str</span>
<span class="sd"> The content of the list as a single string.</span>
-<span class="sd"> '''</span>
+<span class="sd"> """</span>
<span class="n">filenames</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">f</span><span class="p">)</span> <span class="k">for</span> <span class="n">f</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">files_string</span> <span class="o">=</span> <span class="n">get_list_as_string</span><span class="p">(</span><span class="n">filenames</span><span class="p">,</span> <span class="n">concatenate_sign</span><span class="o">=</span><span class="s1">', '</span><span class="p">)</span>
@@ -300,7 +303,7 @@
<div class="viewcode-block" id="UioFiles.delete_files"><a class="viewcode-back" href="../Documentation/Api/api_python.html#UioFiles.UioFiles.delete_files">[docs]</a> <span class="k">def</span> <span class="nf">delete_files</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
- <span class="sd">'''Deletes the files.</span>
+ <span class="sd">"""Deletes the files.</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
@@ -308,7 +311,7 @@
<span class="sd"> Return</span>
<span class="sd"> ------</span>
-<span class="sd"> '''</span>
+<span class="sd"> """</span>
<span class="k">for</span> <span class="n">old_file</span> <span class="ow">in</span> <span class="bp">self</span><span class="o">.</span><span class="n">files</span><span class="p">:</span>
<span class="n">silent_remove</span><span class="p">(</span><span class="n">old_file</span><span class="p">)</span>
diff --git a/Documentation/html/_modules/checks.html b/Documentation/html/_modules/checks.html
index 1b6eb59..e38379b 100644
--- a/Documentation/html/_modules/checks.html
+++ b/Documentation/html/_modules/checks.html
@@ -190,13 +190,16 @@
<span class="kn">from</span> <span class="nn">__future__</span> <span class="k">import</span> <span class="n">print_function</span>
<span class="kn">import</span> <span class="nn">os</span>
<span class="kn">import</span> <span class="nn">sys</span>
-
-<span class="kn">import</span> <span class="nn">_config</span>
+<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span>
+<span class="c1"># pylint: disable=unused-import</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">import</span> <span class="nn">exceptions</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="kn">import</span> <span class="nn">builtins</span> <span class="k">as</span> <span class="nn">exceptions</span>
-<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span>
+<span class="c1"># pylint: enable=unused-import</span>
+
+<span class="c1"># software specific classes and modules from flex_extract</span>
+<span class="kn">import</span> <span class="nn">_config</span>
<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">silent_remove</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># FUNCTIONS</span>
@@ -274,7 +277,7 @@
<span class="k">return</span> <span class="n">grid</span></div>
-<div class="viewcode-block" id="check_area"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_area">[docs]</a><span class="k">def</span> <span class="nf">check_area</span><span class="p">(</span><span class="n">grid</span><span class="p">,</span> <span class="n">area</span><span class="p">,</span> <span class="n">upper</span><span class="p">,</span> <span class="n">lower</span><span class="p">,</span> <span class="n">left</span> <span class="p">,</span> <span class="n">right</span><span class="p">):</span>
+<div class="viewcode-block" id="check_area"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_area">[docs]</a><span class="k">def</span> <span class="nf">check_area</span><span class="p">(</span><span class="n">grid</span><span class="p">,</span> <span class="n">area</span><span class="p">,</span> <span class="n">upper</span><span class="p">,</span> <span class="n">lower</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">right</span><span class="p">):</span>
<span class="sd">'''Defines the correct area string.</span>
<span class="sd"> Checks on the format of the four area components. Wether it is of</span>
@@ -319,19 +322,19 @@
<span class="n">upper</span><span class="p">,</span> <span class="n">left</span><span class="p">,</span> <span class="n">lower</span><span class="p">,</span> <span class="n">right</span> <span class="o">=</span> <span class="n">components</span>
<span class="c1"># determine area format</span>
- <span class="k">if</span> <span class="p">((</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
- <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
- <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span> <span class="p">)</span> <span class="ow">and</span>
- <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">)):</span>
+ <span class="k">if</span> <span class="nb">all</span><span class="p">([(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+ <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+ <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">),</span>
+ <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o">>=</span> <span class="mf">0.01</span> <span class="ow">or</span> <span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span> <span class="o">==</span> <span class="mf">0.</span><span class="p">)]):</span>
<span class="c1"># area is defined in 1/1000 degrees; old format</span>
<span class="n">area</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">,</span>
<span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">,</span>
<span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">,</span>
<span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">1000.</span><span class="p">)</span>
- <span class="k">elif</span> <span class="p">(</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span> <span class="ow">and</span>
- <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span> <span class="ow">and</span>
- <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span> <span class="ow">and</span>
- <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span><span class="p">):</span>
+ <span class="k">elif</span> <span class="nb">all</span><span class="p">([</span><span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span><span class="p">,</span>
+ <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">lower</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span><span class="p">,</span>
+ <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span><span class="p">,</span>
+ <span class="nb">abs</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">right</span><span class="p">)</span> <span class="o">/</span> <span class="mf">10000.</span><span class="p">)</span> <span class="o"><</span> <span class="mf">0.05</span><span class="p">]):</span>
<span class="c1"># area is already in new format</span>
<span class="n">area</span> <span class="o">=</span> <span class="s1">'</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">float</span><span class="p">(</span><span class="n">upper</span><span class="p">),</span>
<span class="nb">float</span><span class="p">(</span><span class="n">left</span><span class="p">),</span>
@@ -341,7 +344,7 @@
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'The area components have different '</span>
<span class="s1">'formats (upper, lower, left, right): '</span>
<span class="s1">'</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">/</span><span class="si">{}</span><span class="s1">'</span><span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">upper</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">lower</span><span class="p">),</span>
- <span class="nb">str</span><span class="p">(</span><span class="n">left</span><span class="p">)</span> <span class="p">,</span> <span class="nb">str</span><span class="p">(</span><span class="n">right</span><span class="p">)))</span>
+ <span class="nb">str</span><span class="p">(</span><span class="n">left</span><span class="p">),</span> <span class="nb">str</span><span class="p">(</span><span class="n">right</span><span class="p">)))</span>
<span class="k">return</span> <span class="n">area</span></div>
@@ -442,7 +445,7 @@
<span class="k">return</span> <span class="mi">0</span></div>
-<div class="viewcode-block" id="check_step"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_step">[docs]</a><span class="k">def</span> <span class="nf">check_step</span><span class="p">(</span><span class="n">step</span><span class="p">,</span> <span class="n">mailfail</span><span class="p">):</span>
+<div class="viewcode-block" id="check_step"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_step">[docs]</a><span class="k">def</span> <span class="nf">check_step</span><span class="p">(</span><span class="n">step</span><span class="p">):</span>
<span class="sd">'''Checks on step format and convert into a list of steps.</span>
<span class="sd"> If the steps were defined with "to" and "by" they are converted into</span>
@@ -455,11 +458,6 @@
<span class="sd"> Specifies the forecast time step from forecast base time.</span>
<span class="sd"> Valid values are hours (HH) from forecast base time.</span>
-<span class="sd"> mailfail : list of str</span>
-<span class="sd"> Contains all email addresses which should be notified.</span>
-<span class="sd"> It might also contain just the ecmwf user name which will trigger</span>
-<span class="sd"> mailing to the associated email address for this user.</span>
-
<span class="sd"> Return</span>
<span class="sd"> ------</span>
<span class="sd"> step : list of str</span>
@@ -566,7 +564,7 @@
<span class="sd"> Specifies the forecast time step from forecast base time.</span>
<span class="sd"> Valid values are hours (HH) from forecast base time.</span>
<span class="sd"> '''</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="p">(</span><span class="nb">len</span><span class="p">(</span><span class="n">ftype</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftime</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">steps</span><span class="p">)):</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftype</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">ftime</span><span class="p">)</span> <span class="o">==</span> <span class="nb">len</span><span class="p">(</span><span class="n">steps</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'ERROR: The number of field types, times and steps '</span>
<span class="s1">'are not the same! Please check the setting in the '</span>
<span class="s1">'CONTROL file!'</span><span class="p">)</span>
@@ -714,7 +712,7 @@
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'start_date was neither specified in command line nor '</span>
<span class="s1">'in CONTROL file.</span><span class="se">\n</span><span class="s1">'</span>
<span class="s1">'Try "</span><span class="si">{}</span><span class="s1"> -h" to print usage information'</span>
- <span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">])</span> <span class="p">)</span>
+ <span class="o">.</span><span class="n">format</span><span class="p">(</span><span class="n">sys</span><span class="o">.</span><span class="n">argv</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))</span>
<span class="c1"># retrieve just one day if end_date isn't set</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">end</span><span class="p">:</span>
@@ -951,8 +949,8 @@
<span class="k">if</span> <span class="n">purefc</span> <span class="ow">and</span> <span class="nb">int</span><span class="p">(</span><span class="n">accmaxstep</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">int</span><span class="p">(</span><span class="n">maxstep</span><span class="p">):</span>
<span class="n">accmaxstep</span> <span class="o">=</span> <span class="n">maxstep</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... For pure forecast mode, the accumulated forecast must '</span>
- <span class="s1">'have the same maxstep as the normal forecast fields!</span><span class="se">\n</span><span class="s1">'</span>
- <span class="s1">'</span><span class="se">\t\t</span><span class="s1"> Accmaxstep was set to maxstep!'</span><span class="p">)</span>
+ <span class="s1">'have the same maxstep as the normal forecast fields!</span><span class="se">\n</span><span class="s1">'</span>
+ <span class="s1">'</span><span class="se">\t\t</span><span class="s1"> Accmaxstep was set to maxstep!'</span><span class="p">)</span>
<span class="k">return</span> <span class="n">accmaxstep</span></div>
<div class="viewcode-block" id="check_addpar"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_addpar">[docs]</a><span class="k">def</span> <span class="nf">check_addpar</span><span class="p">(</span><span class="n">addpar</span><span class="p">):</span>
@@ -1012,7 +1010,7 @@
<span class="k">return</span> <span class="n">job_chunk</span></div>
-<div class="viewcode-block" id="check_number"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_number">[docs]</a><span class="k">def</span> <span class="nf">check_number</span><span class="p">(</span><span class="n">number</span><span class="p">,</span> <span class="n">mailfail</span><span class="p">):</span>
+<div class="viewcode-block" id="check_number"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_number">[docs]</a><span class="k">def</span> <span class="nf">check_number</span><span class="p">(</span><span class="n">number</span><span class="p">):</span>
<span class="sd">'''Check for correct string format of ensemble member numbers.</span>
<span class="sd"> Parameters</span>
@@ -1020,11 +1018,6 @@
<span class="sd"> number : str</span>
<span class="sd"> List of ensemble member forecast runs.</span>
-<span class="sd"> mailfail : list of str</span>
-<span class="sd"> Contains all email addresses which should be notified.</span>
-<span class="sd"> It might also contain just the ecmwf user name which will trigger</span>
-<span class="sd"> mailing to the associated email address for this user.</span>
-
<span class="sd"> Return</span>
<span class="sd"> ------</span>
<span class="sd"> number : str</span>
diff --git a/Documentation/html/_modules/disaggregation.html b/Documentation/html/_modules/disaggregation.html
index f287c99..929f61d 100644
--- a/Documentation/html/_modules/disaggregation.html
+++ b/Documentation/html/_modules/disaggregation.html
@@ -408,7 +408,7 @@
<span class="c1"># the value at the end of the interval (fip1) is prescribed by the</span>
<span class="c1"># geometric mean, restricted such that non-negativity is guaranteed</span>
<span class="c1"># according to Eq. (25)</span>
- <span class="n">fip1</span><span class="o">=</span><span class="nb">min</span><span class="p">(</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="p">,</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span> <span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="p">)</span>
+ <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
<span class="c1"># the function value at the first sub-grid point (fi1) is determined</span>
<span class="c1"># according to the equal area condition with Eq. (19)</span>
@@ -442,10 +442,10 @@
<span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
<span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
- <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
- <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> \
- <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
- <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+ <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">],</span>
+ <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">],</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+ <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
<span class="c1"># recomputation of the sub-grid interval values while the</span>
<span class="c1"># interval boundaries (fi) and (fip2) remains unchanged</span>
@@ -456,7 +456,7 @@
<span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="mf">3.</span><span class="o">/</span><span class="mf">2.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="mf">5.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">fmon</span>
<span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span><span class="o">+</span><span class="p">(</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">fmon</span><span class="p">)</span><span class="o">/</span><span class="mf">3.</span>
- <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">])</span>
+ <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">])</span>
<span class="c1"># otherwise the sub-grid values are calculated and added to the list</span>
<span class="k">else</span><span class="p">:</span>
@@ -467,7 +467,7 @@
<span class="c1"># the value at the end of the interval (fip1) is prescribed by the</span>
<span class="c1"># geometric mean, restricted such that non-negativity is guaranteed</span>
<span class="c1"># according to Eq. (25)</span>
- <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]</span> <span class="p">,</span> <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span> <span class="p">,</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">+</span><span class="mi">1</span><span class="p">]</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="p">)</span>
+ <span class="n">fip1</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">],</span> <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">],</span> <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">+</span> <span class="mi">1</span><span class="p">]</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="p">]))</span>
<span class="c1"># the function value at the first sub-grid point (fi1) is determined</span>
<span class="c1"># according to the equal area condition with Eq. (19)</span>
@@ -485,10 +485,10 @@
<span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
<span class="c1"># substituting (fim1) with fmon, see Eq. (27), (28) and (29)</span>
- <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
- <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">],</span> \
- <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
- <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="n">i</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+ <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">],</span>
+ <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">],</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+ <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="n">i</span> <span class="o">-</span> <span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
<span class="c1"># recomputation of the sub-grid interval values while the</span>
<span class="c1"># interval boundaries (fi) and (fip2) remains unchanged</span>
@@ -519,10 +519,10 @@
<span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
<span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
- <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span> \
- <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
- <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
- <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+ <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span>
+ <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+ <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
<span class="c1"># recomputation of the sub-grid interval values while the</span>
<span class="c1"># interval boundaries (fi) and (fip2) remains unchanged</span>
@@ -533,7 +533,7 @@
<span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">=</span> <span class="mf">3.</span><span class="o">/</span><span class="mf">2.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span><span class="o">-</span><span class="mf">5.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">fmon</span>
<span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">=</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span><span class="o">+</span><span class="p">(</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]</span><span class="o">-</span><span class="n">fmon</span><span class="p">)</span><span class="o">/</span><span class="mf">3.</span>
- <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">,</span><span class="mf">0.</span><span class="p">])</span>
+ <span class="n">f</span><span class="o">.</span><span class="n">extend</span><span class="p">([</span><span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">,</span> <span class="mf">0.</span><span class="p">])</span>
<span class="c1"># otherwise the sub-grid values are calculated and added to the list</span>
<span class="c1"># using the persistence hypothesis as boundary condition</span>
@@ -558,10 +558,10 @@
<span class="c1"># the monotonicity filter corrects the value at (fim1) by</span>
<span class="c1"># substituting (fim1) with (fmon), see Eq. (27), (28) and (29)</span>
- <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span> \
- <span class="mf">3.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span> \
- <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
- <span class="p">(</span><span class="mf">18.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span><span class="o">/</span><span class="mf">13.</span><span class="o">*</span><span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
+ <span class="n">fmon</span> <span class="o">=</span> <span class="nb">min</span><span class="p">(</span><span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">],</span>
+ <span class="mf">3.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">],</span>
+ <span class="n">np</span><span class="o">.</span><span class="n">sqrt</span><span class="p">(</span><span class="nb">max</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span> <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">7</span><span class="p">])</span> <span class="o">*</span>
+ <span class="p">(</span><span class="mf">18.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">g</span><span class="p">[</span><span class="o">-</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> <span class="mf">5.</span> <span class="o">/</span> <span class="mf">13.</span> <span class="o">*</span> <span class="n">f</span><span class="p">[</span><span class="o">-</span><span class="mi">1</span><span class="p">]))))</span>
<span class="c1"># recomputation of the sub-grid interval values while the</span>
<span class="c1"># interval boundaries (fi) and (fip2) remains unchanged</span>
diff --git a/Documentation/html/_modules/get_mars_data.html b/Documentation/html/_modules/get_mars_data.html
index 84f64b3..a2048c2 100644
--- a/Documentation/html/_modules/get_mars_data.html
+++ b/Documentation/html/_modules/get_mars_data.html
@@ -231,13 +231,14 @@
<span class="c1"># add path to local main python path for flex_extract to get full access</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span>
<span class="n">inspect</span><span class="o">.</span><span class="n">getfile</span><span class="p">(</span><span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">())))</span> <span class="o">+</span> <span class="s1">'/../'</span><span class="p">)</span>
+<span class="c1"># pylint: disable=wrong-import-position</span>
<span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
- <span class="n">read_ecenv</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">)</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">my_error</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Classes.EcFlexpart</span> <span class="k">import</span> <span class="n">EcFlexpart</span>
<span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
<span class="kn">from</span> <span class="nn">Classes.MarsRetrieval</span> <span class="k">import</span> <span class="n">MarsRetrieval</span>
-
+<span class="c1"># pylint: enable=wrong-import-position</span>
+<span class="c1"># pylint: disable=invalid-name</span>
<span class="k">try</span><span class="p">:</span>
<span class="n">ec_api</span> <span class="o">=</span> <span class="kc">True</span>
<span class="kn">import</span> <span class="nn">ecmwfapi</span>
@@ -249,6 +250,7 @@
<span class="kn">import</span> <span class="nn">cdsapi</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="n">cds_api</span> <span class="o">=</span> <span class="kc">False</span>
+<span class="c1"># pylint: enable=invalid-name</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># FUNCTION</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
@@ -384,9 +386,22 @@
<div class="viewcode-block" id="check_dates_for_nonflux_fc_times"><a class="viewcode-back" href="../Documentation/Api/api_python.html#get_mars_data.check_dates_for_nonflux_fc_times">[docs]</a><span class="k">def</span> <span class="nf">check_dates_for_nonflux_fc_times</span><span class="p">(</span><span class="n">types</span><span class="p">,</span> <span class="n">times</span><span class="p">):</span>
- <span class="sd">'''</span>
+ <span class="sd">'''Checks if the time 18UTC corresponds to forecast field.</span>
+
+<span class="sd"> Parameters</span>
+<span class="sd"> ----------</span>
+<span class="sd"> types : list of str</span>
+<span class="sd"> List of field types.</span>
+
+<span class="sd"> times : list of str or str</span>
+<span class="sd"> The time in hours of the field.</span>
+
+<span class="sd"> Return</span>
+<span class="sd"> ------</span>
+<span class="sd"> True or False</span>
+
<span class="sd"> '''</span>
- <span class="k">for</span> <span class="n">ty</span><span class="p">,</span> <span class="n">ti</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">types</span><span class="p">,</span><span class="n">times</span><span class="p">):</span>
+ <span class="k">for</span> <span class="n">ty</span><span class="p">,</span> <span class="n">ti</span> <span class="ow">in</span> <span class="nb">zip</span><span class="p">(</span><span class="n">types</span><span class="p">,</span> <span class="n">times</span><span class="p">):</span>
<span class="k">if</span> <span class="n">ty</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="o">==</span> <span class="s1">'FC'</span> <span class="ow">and</span> <span class="nb">int</span><span class="p">(</span><span class="n">ti</span><span class="p">)</span> <span class="o">==</span> <span class="mi">18</span><span class="p">:</span>
<span class="k">return</span> <span class="kc">True</span>
<span class="k">return</span> <span class="kc">False</span></div>
@@ -406,7 +421,7 @@
<span class="sd"> boundary conditions)</span>
<span class="sd"> Since for basetime the extraction contains the 12 hours upfront,</span>
-<span class="sd"> if basetime is 0, the starting date has to be the day before and</span>
+<span class="sd"> if basetime is 0, the starting date has to be the day before</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
diff --git a/Documentation/html/_modules/install.html b/Documentation/html/_modules/install.html
index 371bd1e..51c77e4 100644
--- a/Documentation/html/_modules/install.html
+++ b/Documentation/html/_modules/install.html
@@ -229,9 +229,7 @@
<span class="kn">import</span> <span class="nn">os</span>
<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">glob</span>
<span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
<span class="kn">import</span> <span class="nn">tarfile</span>
<span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
@@ -340,16 +338,13 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
- <span class="kn">import</span> <span class="nn">tarfile</span>
<span class="n">tarball_name</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">'.tar'</span>
<span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span> <span class="n">tarball_name</span><span class="p">)</span>
- <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span>
- <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
+ <span class="n">mk_compilejob</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
- <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span>
- <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
+ <span class="n">mk_job_template</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span>
<span class="n">mk_env_vars</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">ecgid</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">gateway</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">destination</span><span class="p">)</span>
@@ -366,7 +361,7 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'Job compilation script has been submitted to ecgate for '</span> <span class="o">+</span>
<span class="s1">'installation in '</span> <span class="o">+</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">+</span>
- <span class="s1">'/'</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">)</span>
+ <span class="s1">'/'</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'You should get an email with subject "flexcompile" within '</span> <span class="o">+</span>
<span class="s1">'the next few minutes!'</span><span class="p">)</span>
@@ -385,12 +380,11 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
- <span class="kn">import</span> <span class="nn">tarfile</span>
<span class="n">tar_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">,</span>
<span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">'.tar'</span><span class="p">)</span>
- <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span> <span class="p">:</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">==</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: installdir has not been specified'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'flex_extract will be installed in here by compiling the '</span> <span class="o">+</span>
<span class="s1">'Fortran source in '</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span><span class="p">)</span>
@@ -402,12 +396,12 @@
<span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">):</span>
<span class="n">mk_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
<span class="n">make_dir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
- <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
<span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
- <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">))</span>
<span class="n">un_tarball</span><span class="p">(</span><span class="n">tar_file</span><span class="p">)</span>
<span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">,</span>
- <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
<span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
<span class="c1"># Create Fortran executable - CONVERT2</span>
@@ -447,7 +441,7 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: unknown or missing installation target '</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'target: '</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'please specify correct installation target '</span> <span class="o">+</span>
- <span class="nb">str</span><span class="p">(</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
+ <span class="nb">str</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">INSTALL_TARGETS</span><span class="p">))</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'use -h or --help for help'</span><span class="p">)</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="mi">1</span><span class="p">)</span>
@@ -495,7 +489,6 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
- <span class="kn">from</span> <span class="nn">glob</span> <span class="k">import</span> <span class="n">glob</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Create tarball ...'</span><span class="p">)</span>
@@ -506,33 +499,33 @@
<span class="c1"># get lists of the files to be added to the tar file</span>
<span class="k">if</span> <span class="n">target</span> <span class="o">==</span> <span class="s1">'local'</span><span class="p">:</span>
- <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[]</span>
+ <span class="n">ecmwf_env_file</span> <span class="o">=</span> <span class="p">[]</span>
<span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
<span class="s1">'run_local.sh'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
- <span class="n">ECMWF_ENV_FILE</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
+ <span class="n">ecmwf_env_file</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_ECMWF_ENV</span><span class="p">]</span>
<span class="n">runfile</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
- <span class="s1">'run.sh'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_RUN_DIR</span><span class="p">,</span>
+ <span class="s1">'run.sh'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">pyfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHON_SRC</span><span class="p">,</span> <span class="s1">'*py'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">pytestfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">'*py'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_PYTHONTEST_SRC</span><span class="p">,</span> <span class="s1">'*py'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">controlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span>
<span class="s1">'CONTROL*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span> <span class="p">,</span> <span class="s1">'*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="p">,</span> <span class="s1">'*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*.temp'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*.temp'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*.nl'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*.nl'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span> <span class="p">,</span> <span class="s1">'*grib*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*grib*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.f*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.f90'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">hfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.h'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
@@ -541,23 +534,25 @@
<span class="c1"># concatenate single lists to one for a better looping</span>
<span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
- <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ECMWF_ENV_FILE</span> <span class="o">+</span> \
+ <span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ecmwf_env_file</span> <span class="o">+</span> \
<span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
<span class="p">[</span><span class="s1">'CODE_OF_CONDUCT.md'</span><span class="p">,</span> <span class="s1">'LICENSE.md'</span><span class="p">,</span> <span class="s1">'README.md'</span><span class="p">]</span>
<span class="c1"># create installation tar-file</span>
- <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">".ksh"</span><span class="p">]</span>
+ <span class="n">exclude_files</span> <span class="o">=</span> <span class="p">[</span><span class="s2">".ksh"</span><span class="p">,</span> <span class="s2">".tar"</span><span class="p">]</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">with</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">open</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">,</span> <span class="s2">"w:gz"</span><span class="p">)</span> <span class="k">as</span> <span class="n">tar_handle</span><span class="p">:</span>
- <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
- <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">file</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
+ <span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span> <span class="n">filelist</span><span class="p">:</span>
+ <span class="n">tar_handle</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">filename</span><span class="p">,</span> <span class="n">recursive</span><span class="o">=</span><span class="kc">False</span><span class="p">,</span>
<span class="nb">filter</span><span class="o">=</span><span class="k">lambda</span> <span class="n">tarinfo</span><span class="p">:</span> <span class="kc">None</span>
- <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
- <span class="ow">in</span> <span class="n">exclude_files</span>
- <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">splitext</span><span class="p">(</span><span class="n">tarinfo</span><span class="o">.</span><span class="n">name</span><span class="p">)[</span><span class="mi">1</span><span class="p">]</span>
+ <span class="ow">in</span> <span class="n">exclude_files</span>
+ <span class="k">else</span> <span class="n">tarinfo</span><span class="p">)</span>
<span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
+
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to create the tar-file '</span> <span class="o">+</span>
- <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
+ <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
<span class="k">return</span></div>
@@ -583,7 +578,7 @@
<span class="n">tar_handle</span><span class="o">.</span><span class="n">extractall</span><span class="p">()</span>
<span class="k">except</span> <span class="n">tarfile</span><span class="o">.</span><span class="n">TarError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... error occured while trying to read tar-file '</span> <span class="o">+</span>
- <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
+ <span class="nb">str</span><span class="p">(</span><span class="n">tarball_path</span><span class="p">))</span>
<span class="k">except</span> <span class="ne">OSError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR CODE: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">errno</span><span class="p">))</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
@@ -626,11 +621,11 @@
<span class="n">ecmwfvars_template</span> <span class="o">=</span> <span class="n">loader</span><span class="o">.</span><span class="n">load</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">TEMPFILE_USER_ENVVARS</span><span class="p">,</span>
<span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
- <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
- <span class="n">user_group</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
- <span class="n">gateway_name</span> <span class="o">=</span> <span class="n">gateway</span><span class="p">,</span>
- <span class="n">destination_name</span> <span class="o">=</span> <span class="n">destination</span>
- <span class="p">)</span>
+ <span class="n">stream</span> <span class="o">=</span> <span class="n">ecmwfvars_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span><span class="n">user_name</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+ <span class="n">user_group</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+ <span class="n">gateway_name</span><span class="o">=</span><span class="n">gateway</span><span class="p">,</span>
+ <span class="n">destination_name</span><span class="o">=</span><span class="n">destination</span>
+ <span class="p">)</span>
<span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -655,7 +650,7 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">target</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
+<div class="viewcode-block" id="mk_compilejob"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_compilejob">[docs]</a><span class="k">def</span> <span class="nf">mk_compilejob</span><span class="p">(</span><span class="n">makefile</span><span class="p">,</span> <span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
<span class="sd">'''Modifies the original job template file so that it is specified</span>
<span class="sd"> for the user and the environment were it will be applied. Result</span>
<span class="sd"> is stored in a new file "job.temp" in the python directory.</span>
@@ -666,9 +661,6 @@
<span class="sd"> Name of the makefile which should be used to compile FORTRAN</span>
<span class="sd"> CONVERT2 program.</span>
-<span class="sd"> target : str</span>
-<span class="sd"> The target where the installation should be done, e.g. the queue.</span>
-
<span class="sd"> ecuid : str</span>
<span class="sd"> The user id on ECMWF server.</span>
@@ -696,12 +688,12 @@
<span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
<span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
- <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
- <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
- <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
- <span class="n">fp_root_scripts</span> <span class="o">=</span> <span class="n">fp_root</span><span class="p">,</span>
- <span class="n">makefile</span> <span class="o">=</span> <span class="n">makefile</span><span class="p">,</span>
- <span class="n">fortran_program</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
+ <span class="n">usergroup</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+ <span class="n">username</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+ <span class="n">version_number</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
+ <span class="n">fp_root_scripts</span><span class="o">=</span><span class="n">fp_root</span><span class="p">,</span>
+ <span class="n">makefile</span><span class="o">=</span><span class="n">makefile</span><span class="p">,</span>
+ <span class="n">fortran_program</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span>
<span class="p">)</span>
<span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -730,7 +722,7 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">gateway</span><span class="p">,</span> <span class="n">destination</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
+<div class="viewcode-block" id="mk_job_template"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_job_template">[docs]</a><span class="k">def</span> <span class="nf">mk_job_template</span><span class="p">(</span><span class="n">ecuid</span><span class="p">,</span> <span class="n">ecgid</span><span class="p">,</span> <span class="n">fp_root</span><span class="p">):</span>
<span class="sd">'''Modifies the original job template file so that it is specified</span>
<span class="sd"> for the user and the environment were it will be applied. Result</span>
<span class="sd"> is stored in a new file.</span>
@@ -743,13 +735,6 @@
<span class="sd"> ecgid : str</span>
<span class="sd"> The group id on ECMWF server.</span>
-<span class="sd"> gateway : str</span>
-<span class="sd"> The gateway server the user is using.</span>
-
-<span class="sd"> destination : str</span>
-<span class="sd"> The remote destination which is used to transfer files</span>
-<span class="sd"> from ECMWF server to local gateway server.</span>
-
<span class="sd"> fp_root : str</span>
<span class="sd"> Path to the root directory of FLEXPART environment or flex_extract</span>
<span class="sd"> environment.</span>
@@ -776,10 +761,10 @@
<span class="bp">cls</span><span class="o">=</span><span class="n">NewTextTemplate</span><span class="p">)</span>
<span class="n">stream</span> <span class="o">=</span> <span class="n">compile_template</span><span class="o">.</span><span class="n">generate</span><span class="p">(</span>
- <span class="n">usergroup</span> <span class="o">=</span> <span class="n">ecgid</span><span class="p">,</span>
- <span class="n">username</span> <span class="o">=</span> <span class="n">ecuid</span><span class="p">,</span>
- <span class="n">version_number</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
- <span class="n">fp_root_path</span> <span class="o">=</span> <span class="n">fp_root_path_to_python</span><span class="p">,</span>
+ <span class="n">usergroup</span><span class="o">=</span><span class="n">ecgid</span><span class="p">,</span>
+ <span class="n">username</span><span class="o">=</span><span class="n">ecuid</span><span class="p">,</span>
+ <span class="n">version_number</span><span class="o">=</span><span class="n">_config</span><span class="o">.</span><span class="n">_VERSION_STR</span><span class="p">,</span>
+ <span class="n">fp_root_path</span><span class="o">=</span><span class="n">fp_root_path_to_python</span><span class="p">,</span>
<span class="p">)</span>
<span class="k">except</span> <span class="n">UndefinedError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
@@ -872,9 +857,9 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: Makefile call failed:'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
- <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">'ls'</span><span class="p">,</span> <span class="s1">'-l'</span><span class="p">,</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span>
- <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span> <span class="n">error_msg</span><span class="o">=</span>
- <span class="s1">'FORTRAN EXECUTABLE COULD NOT BE FOUND!'</span><span class="p">)</span>
+ <span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">'ls'</span><span class="p">,</span> <span class="s1">'-l'</span><span class="p">,</span>
+ <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FORTRAN_EXECUTABLE</span><span class="p">)],</span>
+ <span class="n">error_msg</span><span class="o">=</span><span class="s1">'FORTRAN EXECUTABLE COULD NOT BE FOUND!'</span><span class="p">)</span>
<span class="k">return</span></div>
diff --git a/Documentation/html/_modules/prepare_flexpart.html b/Documentation/html/_modules/prepare_flexpart.html
index b568811..7dcd113 100644
--- a/Documentation/html/_modules/prepare_flexpart.html
+++ b/Documentation/html/_modules/prepare_flexpart.html
@@ -199,7 +199,9 @@
<span class="c1"># International License. To view a copy of this license, visit</span>
<span class="c1"># http://creativecommons.org/licenses/by/4.0/ or send a letter to</span>
<span class="c1"># Creative Commons, PO Box 1866, Mountain View, CA 94042, USA.</span>
-<span class="c1">#*******************************************************************************</span>
+<span class="c1"># *******************************************************************************</span>
+<span class="c1"># pylint: disable=ungrouped-imports</span>
+<span class="c1"># not necessary that we group the imports</span>
<span class="sd">'''This script prepares the final version of the grib files which are</span>
<span class="sd">then used by FLEXPART.</span>
@@ -229,19 +231,19 @@
<span class="kn">import</span> <span class="nn">os</span>
<span class="kn">import</span> <span class="nn">inspect</span>
<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">socket</span>
<span class="c1"># software specific classes and modules from flex_extract</span>
<span class="c1"># add path to local main python path for flex_extract to get full access</span>
<span class="n">sys</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">append</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">dirname</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span>
<span class="n">inspect</span><span class="o">.</span><span class="n">getfile</span><span class="p">(</span><span class="n">inspect</span><span class="o">.</span><span class="n">currentframe</span><span class="p">())))</span> <span class="o">+</span> <span class="s1">'/../'</span><span class="p">)</span>
-<span class="kn">import</span> <span class="nn">_config</span>
+<span class="c1"># pylint: disable=wrong-import-position</span>
+<span class="c1">#import _config</span>
<span class="kn">from</span> <span class="nn">Mods.checks</span> <span class="k">import</span> <span class="n">check_ppid</span>
<span class="kn">from</span> <span class="nn">Classes.UioFiles</span> <span class="k">import</span> <span class="n">UioFiles</span>
-<span class="kn">from</span> <span class="nn">Classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">clean_up</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
- <span class="n">read_ecenv</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">)</span>
+<span class="c1">#from Classes.ControlFile import ControlFile</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">clean_up</span><span class="p">,</span> <span class="n">make_dir</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Classes.EcFlexpart</span> <span class="k">import</span> <span class="n">EcFlexpart</span>
+<span class="c1"># pylint: enable=wrong-import-position</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># FUNCTION</span>
@@ -307,7 +309,7 @@
<span class="n">start</span> <span class="o">=</span> <span class="n">start</span> <span class="o">-</span> <span class="n">datetime</span><span class="o">.</span><span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Prepare '</span> <span class="o">+</span> <span class="n">start</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">)</span> <span class="o">+</span>
- <span class="s2">"/to/"</span> <span class="o">+</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">))</span>
+ <span class="s1">'/to/'</span> <span class="o">+</span> <span class="n">end</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s2">"%Y%m</span><span class="si">%d</span><span class="s2">"</span><span class="p">))</span>
<span class="c1"># create output dir if necessary</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">exists</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">outputdir</span><span class="p">):</span>
@@ -332,11 +334,6 @@
<span class="n">flexpart</span><span class="o">.</span><span class="n">calc_extra_elda</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">prefix</span><span class="p">)</span>
<span class="n">flexpart</span><span class="o">.</span><span class="n">process_output</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
- <span class="c1"># make use of a possible conversion to a</span>
- <span class="c1"># specific flexpart binary format</span>
- <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">grib2flexpart</span><span class="p">:</span>
- <span class="n">flexpart</span><span class="o">.</span><span class="n">prepare_fp_files</span><span class="p">(</span><span class="n">c</span><span class="p">)</span>
-
<span class="c1"># check if in debugging mode, then store all files</span>
<span class="c1"># otherwise delete temporary files</span>
<span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">debug</span><span class="p">:</span>
diff --git a/Documentation/html/_modules/submit.html b/Documentation/html/_modules/submit.html
index 2c7d084..2d7a571 100644
--- a/Documentation/html/_modules/submit.html
+++ b/Documentation/html/_modules/submit.html
@@ -225,18 +225,15 @@
<span class="kn">import</span> <span class="nn">os</span>
<span class="kn">import</span> <span class="nn">sys</span>
-<span class="kn">import</span> <span class="nn">subprocess</span>
-<span class="kn">import</span> <span class="nn">inspect</span>
-<span class="kn">import</span> <span class="nn">collections</span>
<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
<span class="c1"># software specific classes and modules from flex_extract</span>
<span class="kn">import</span> <span class="nn">_config</span>
-<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span> <span class="n">get_cmdline_args</span><span class="p">,</span>
- <span class="n">submit_job_to_ecserver</span><span class="p">,</span> <span class="n">read_ecenv</span><span class="p">)</span>
+<span class="kn">from</span> <span class="nn">Mods.tools</span> <span class="k">import</span> <span class="p">(</span><span class="n">setup_controldata</span><span class="p">,</span> <span class="n">normal_exit</span><span class="p">,</span>
+ <span class="n">submit_job_to_ecserver</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Mods.get_mars_data</span> <span class="k">import</span> <span class="n">get_mars_data</span>
<span class="kn">from</span> <span class="nn">Mods.prepare_flexpart</span> <span class="k">import</span> <span class="n">prepare_flexpart</span>
-<span class="kn">from</span> <span class="nn">Classes.ControlFile</span> <span class="k">import</span> <span class="n">ControlFile</span>
+<span class="c1">#from Classes.ControlFile import ControlFile</span>
<span class="c1"># ------------------------------------------------------------------------------</span>
diff --git a/Documentation/html/_modules/tools.html b/Documentation/html/_modules/tools.html
index bae6076..17e57df 100644
--- a/Documentation/html/_modules/tools.html
+++ b/Documentation/html/_modules/tools.html
@@ -230,10 +230,12 @@
<span class="kn">import</span> <span class="nn">glob</span>
<span class="kn">import</span> <span class="nn">subprocess</span>
<span class="kn">import</span> <span class="nn">traceback</span>
+<span class="c1"># pylint: disable=unused-import</span>
<span class="k">try</span><span class="p">:</span>
<span class="kn">import</span> <span class="nn">exceptions</span>
<span class="k">except</span> <span class="ne">ImportError</span><span class="p">:</span>
<span class="kn">import</span> <span class="nn">builtins</span> <span class="k">as</span> <span class="nn">exceptions</span>
+<span class="c1"># pylint: enable=unused-import</span>
<span class="kn">from</span> <span class="nn">datetime</span> <span class="k">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
<span class="kn">from</span> <span class="nn">argparse</span> <span class="k">import</span> <span class="n">ArgumentParser</span><span class="p">,</span> <span class="n">ArgumentDefaultsHelpFormatter</span>
@@ -429,7 +431,7 @@
<span class="sd"> Contains the environment parameter ecuid, ecgid, gateway</span>
<span class="sd"> and destination for ECMWF server environments.</span>
<span class="sd"> '''</span>
- <span class="n">envs</span><span class="o">=</span> <span class="p">{}</span>
+ <span class="n">envs</span> <span class="o">=</span> <span class="p">{}</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filepath</span><span class="p">,</span> <span class="s1">'r'</span><span class="p">)</span> <span class="k">as</span> <span class="n">f</span><span class="p">:</span>
<span class="k">for</span> <span class="n">line</span> <span class="ow">in</span> <span class="n">f</span><span class="p">:</span>
@@ -440,7 +442,7 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR MESSAGE:</span><span class="se">\n</span><span class="s1"> </span><span class="se">\t</span><span class="s1"> '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="o">.</span><span class="n">strerror</span><span class="p">))</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">... Error occured while trying to read ECMWF_ENV '</span>
- <span class="s1">'file: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">filepath</span><span class="p">))</span>
+ <span class="s1">'file: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">filepath</span><span class="p">))</span>
<span class="k">return</span> <span class="n">envs</span></div>
@@ -463,8 +465,9 @@
<span class="nb">print</span><span class="p">(</span><span class="s2">"... clean inputdir!"</span><span class="p">)</span>
- <span class="n">cleanlist</span> <span class="o">=</span> <span class="p">[</span><span class="n">file</span> <span class="k">for</span> <span class="n">file</span> <span class="ow">in</span> <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="s2">"*"</span><span class="p">))</span>
- <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">file</span><span class="p">)</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">prefix</span><span class="p">)]</span>
+ <span class="n">cleanlist</span> <span class="o">=</span> <span class="p">[</span><span class="n">filename</span> <span class="k">for</span> <span class="n">filename</span> <span class="ow">in</span>
+ <span class="n">glob</span><span class="o">.</span><span class="n">glob</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="s2">"*"</span><span class="p">))</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">basename</span><span class="p">(</span><span class="n">filename</span><span class="p">)</span><span class="o">.</span><span class="n">startswith</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">prefix</span><span class="p">)]</span>
<span class="k">if</span> <span class="n">cleanlist</span><span class="p">:</span>
<span class="k">for</span> <span class="n">element</span> <span class="ow">in</span> <span class="n">cleanlist</span><span class="p">:</span>
@@ -532,7 +535,7 @@
<span class="n">stdout</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
<span class="n">stderr</span><span class="o">=</span><span class="n">subprocess</span><span class="o">.</span><span class="n">PIPE</span><span class="p">,</span>
<span class="n">bufsize</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
- <span class="n">pout</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">(</span><span class="nb">input</span><span class="o">=</span><span class="n">message</span><span class="o">.</span><span class="n">encode</span><span class="p">()</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n\n</span><span class="s1">'</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
+ <span class="n">pout</span> <span class="o">=</span> <span class="n">p</span><span class="o">.</span><span class="n">communicate</span><span class="p">(</span><span class="nb">input</span><span class="o">=</span><span class="n">message</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n\n</span><span class="s1">'</span><span class="p">)[</span><span class="mi">0</span><span class="p">]</span>
<span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'... ERROR: '</span> <span class="o">+</span> <span class="nb">str</span><span class="p">(</span><span class="n">e</span><span class="p">))</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'... Email could not be sent!'</span><span class="p">)</span>
@@ -692,7 +695,7 @@
<span class="k">if</span> <span class="ow">not</span> <span class="n">pars</span><span class="p">:</span>
<span class="k">return</span> <span class="p">[]</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
- <span class="n">pars</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
+ <span class="n">pars</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
<span class="n">cpar</span> <span class="o">=</span> <span class="n">pars</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
<span class="n">ipar</span> <span class="o">=</span> <span class="p">[]</span>
@@ -736,7 +739,7 @@
<span class="k">if</span> <span class="ow">not</span> <span class="n">pars</span><span class="p">:</span>
<span class="k">return</span> <span class="p">[]</span>
<span class="k">if</span> <span class="ow">not</span> <span class="nb">isinstance</span><span class="p">(</span><span class="n">pars</span><span class="p">,</span> <span class="nb">str</span><span class="p">):</span>
- <span class="n">pars</span><span class="o">=</span><span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
+ <span class="n">pars</span> <span class="o">=</span> <span class="nb">str</span><span class="p">(</span><span class="n">pars</span><span class="p">)</span>
<span class="n">cpar</span> <span class="o">=</span> <span class="n">pars</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
<span class="n">spar</span> <span class="o">=</span> <span class="p">[]</span>
@@ -929,8 +932,7 @@
<span class="n">gid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">f</span><span class="p">)</span>
<span class="c1"># information needed from grib message</span>
- <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span>
- <span class="s1">'Ni'</span><span class="p">,</span>
+ <span class="n">keys</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'Ni'</span><span class="p">,</span>
<span class="s1">'Nj'</span><span class="p">,</span>
<span class="s1">'latitudeOfFirstGridPointInDegrees'</span><span class="p">,</span>
<span class="s1">'longitudeOfFirstGridPointInDegrees'</span><span class="p">,</span>
@@ -944,8 +946,8 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">Informations are: '</span><span class="p">)</span>
<span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keys</span><span class="p">:</span>
<span class="c1"># Get the value of the key in a grib message.</span>
- <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span><span class="n">key</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="s2">"</span><span class="si">%s</span><span class="s2"> = </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="p">(</span><span class="n">key</span><span class="p">,</span><span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
+ <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]</span> <span class="o">=</span> <span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">)</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s2">"</span><span class="si">%s</span><span class="s2"> = </span><span class="si">%s</span><span class="s2">"</span> <span class="o">%</span> <span class="p">(</span><span class="n">key</span><span class="p">,</span> <span class="n">data</span><span class="p">[</span><span class="n">key</span><span class="p">]))</span>
<span class="c1"># Free the memory for the message referred as gribid.</span>
<span class="n">codes_release</span><span class="p">(</span><span class="n">gid</span><span class="p">)</span>
diff --git a/Documentation/html/_sources/index.rst.txt b/Documentation/html/_sources/index.rst.txt
index bea0b26..30308dd 100644
--- a/Documentation/html/_sources/index.rst.txt
+++ b/Documentation/html/_sources/index.rst.txt
@@ -41,9 +41,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="documentation.html">Documentation</a></h2>
<ul>
- <li><a href="">Content</a></li>
- <li><a href="">Configuration</a></li>
- <li><a href="">Tutorials</a></li>
+ <li><a href="Documentation/overview.html">Overview</a></li>
+ <li><a href="Documentation/input.html">Control & Input Data</a></li>
+ <li><a href="Documentation/output.html">Output Data</a></li>
</ul>
</td>
</tr>
@@ -54,9 +54,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="quick_start.html">Quick Start</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+ <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+ <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -65,9 +65,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="evaluation.html">Evaluation</a></h2>
<ul>
- <li><a href="">Code</a></li>
- <li><a href="">Functionality</a></li>
- <li><a href="">Regression</a></li>
+ <li><a href="Evaluation/staticcode.html">Code</a></li>
+ <li><a href="Evaluation/testcases.html">Functionality</a></li>
+ <li><a href="Evaluation/metrics.html">Regression</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -76,9 +76,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="dev_guide.html">Developer</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="Developers/gen_docu.html">Update Documentation</a></li>
+ <li><a href=""></a><Placeholder></li>
+ <li><a href=""></a><Placeholder></li>
</ul>
</td>
</tr>
diff --git a/Documentation/html/genindex.html b/Documentation/html/genindex.html
index dd359d6..f9cdf0f 100644
--- a/Documentation/html/genindex.html
+++ b/Documentation/html/genindex.html
@@ -480,8 +480,6 @@
<li><a href="Documentation/Api/api_python.html#get_mars_data.get_mars_data">get_mars_data() (in module get_mars_data)</a>
</li>
<li><a href="Documentation/Api/api_python.html#EcFlexpart.EcFlexpart.glevelist">glevelist (EcFlexpart.EcFlexpart attribute)</a>
-</li>
- <li><a href="Documentation/Api/api_python.html#ControlFile.ControlFile.grib2flexpart">grib2flexpart (ControlFile.ControlFile attribute)</a>
</li>
<li><a href="Documentation/Api/api_python.html#GribUtil.GribUtil">GribUtil (class in GribUtil)</a>
diff --git a/Documentation/html/index.html b/Documentation/html/index.html
index 419c432..2e66024 100644
--- a/Documentation/html/index.html
+++ b/Documentation/html/index.html
@@ -195,9 +195,9 @@
</div>
<h2><a href="documentation.html">Documentation</a></h2>
<ul>
- <li><a href="">Content</a></li>
- <li><a href="">Configuration</a></li>
- <li><a href="">Tutorials</a></li>
+ <li><a href="Documentation/overview.html">Overview</a></li>
+ <li><a href="Documentation/input.html">Control & Input Data</a></li>
+ <li><a href="Documentation/output.html">Output Data</a></li>
</ul>
</td>
</tr>
@@ -208,9 +208,9 @@
</div>
<h2><a href="quick_start.html">Quick Start</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+ <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+ <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -219,9 +219,9 @@
</div>
<h2><a href="evaluation.html">Evaluation</a></h2>
<ul>
- <li><a href="">Code</a></li>
- <li><a href="">Functionality</a></li>
- <li><a href="">Regression</a></li>
+ <li><a href="Evaluation/staticcode.html">Code</a></li>
+ <li><a href="Evaluation/testcases.html">Functionality</a></li>
+ <li><a href="Evaluation/metrics.html">Regression</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -230,9 +230,9 @@
</div>
<h2><a href="dev_guide.html">Developer</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="Developers/gen_docu.html">Update Documentation</a></li>
+ <li><a href=""></a><Placeholder></li>
+ <li><a href=""></a><Placeholder></li>
</ul>
</td>
</tr>
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Documentation","Fortran\u2019s Auto Generated Documentation","Python\u2019s Auto Generated Documentation","CONTROL file changes","The Compilation Jobscript <code class=\"docutils literal notranslate\"><span class=\"pre\">compilejob.ksh</span></code>","The CONTROL file","The CONTROL parameters","ECMWF User Credential file <code class=\"docutils literal notranslate\"><span class=\"pre\">ECMWF_ENV</span></code>","CONTROL file examples","The Fortran Makefile - <code class=\"docutils literal notranslate\"><span class=\"pre\">CONVERT2</span></code>","The Jobscript <code class=\"docutils literal notranslate\"><span class=\"pre\">job.ksh</span></code>","The executable Script - <code class=\"docutils literal notranslate\"><span class=\"pre\">run.sh</span></code>","The Installation Script - <code class=\"docutils literal notranslate\"><span class=\"pre\">setup.sh</span></code>","Templates","Application Modes","Program Flow","Auto Generated Documentation","Disaggregation of Flux Data","Control & Input Data","Output Data","Overview","Vertical Coordinate","Access Modes","Link Collection for Quick finder","Hints to specify dataset retrieval","Available Datasets for Member State users","Available Datasets for Public users","Metrics","Static Code Analysis","Testcases","Gateway mode installation","Local mode installation","Remote mode installation","FAQ - Frequently asked questions","Known Bugs and Issues","Developer Team","Changelog","Developer Guide","Documentation","ECMWF Data","Evaluation","Welcome to <code class=\"docutils literal notranslate\"><span class=\"pre\">flex_extract</span></code>\u2019s user documentation!","Installation","Quick Start","Support","ToDos"],titleterms:{"class":2,"new":[19,36],"public":[26,42,43],"static":28,CDS:31,The:[4,5,6,9,10,11,12],access:22,adapt:[],addit:[0,6,19],adjust:43,agre:[],agreement:42,analysi:28,api:31,applic:[14,15],ask:33,auto:[1,2,16],avail:[24,25,26],block:0,bug:[34,36,44],calcul:21,can:[24,33],cera:43,chang:[3,36],changelog:36,check:2,code:28,collect:23,combin:[42,43],comparison:29,compil:4,compilejob:[4,13],content:[7,11,12,19],continu:21,control:[3,5,6,8,18,43],controlfil:2,convert2:[9,19],convert:13,coordin:21,credenti:7,dai:[],data:[6,17,18,19,24,25,39,43],dataset:[24,25,26,42,43],definit:43,delight:[],depend:[30,31,32,42],develop:[35,37],diagramm:0,differ:15,disagg:[],disaggreg:[2,17,19],distribut:33,document:[0,1,2,16,38,41],doe:[4,10],domain:6,done:[],download:42,ecflexpart:2,ecmwf:[7,31,39,42],ecmwf_env:[7,13],ensembl:19,environ:[30,31,32],equat:21,era:43,evalu:40,exampl:[4,5,8,10,15],execut:11,faq:[33,44],featur:[36,43],field:[6,17,19],file:[3,5,6,7,8,19,21,29,43],find:24,finder:23,fix:36,flex_extract:[41,42],flexpart:[19,42],flow:15,flux:[6,17,19],forecast:19,format:5,fort:19,fortran:[1,9,19,42],frequent:33,from:[21,33],frozen:[],full:42,gatewai:[30,43],gener:[1,2,6,15,16],get_mars_data:2,grib:[19,29],gributil:2,guid:37,half:[],hint:[24,43],horizont:21,host:[],how:24,index:19,input:[18,19],instal:[2,12,30,31,32,33,42],interim:43,issu:[34,44],job:[10,13,43],jobscript:[4,10],known:[34,44],ksh:[4,10],level:25,librari:33,licenc:42,link:23,list:44,local:[15,31,43],mail:44,makefil:9,mar:[19,21,29],marsretriev:2,member:[15,25],method:[],metric:27,mix:[],mode:[14,15,22,30,31,32,43],model:25,modul:2,need:[],old:[],older:17,onlin:0,oper:43,option:[11,12],out:24,output:[19,21],overview:20,packag:33,paramet:[6,11,12,21,43],parti:33,pre:21,precip:[],precipit:[17,19],predict:19,prepar:[21,30,31,32,43],prepare_flexpart:2,program:[2,15,19,42],pure:19,python:2,question:33,quick:[23,43],registr:42,releas:36,remot:[32,43],report:44,request:[19,29],requir:[],rest:17,retriev:24,run:11,script:[4,11,12],section:6,select:43,sequenc:0,server:[],set:15,setup:12,softwar:0,some:43,specif:43,specifi:24,sphinx:0,standard:19,start:43,state:25,submiss:11,submit:[2,11],support:44,surfac:25,system:44,team:35,temp:13,templat:13,temporari:19,test:[30,31,42],testcas:29,third:33,ticket:44,time:6,todo:[43,45],tool:2,uiofil:2,updat:0,usag:[11,12],user:[6,7,15,25,26,41],using:21,veloc:21,version:17,versu:[],vertic:[6,19,21],web:31,welcom:41,what:[4,10,24,33],why:[],wind:[6,21],workflow:15}})
\ No newline at end of file
diff --git a/For_developers/Sphinx/source/index.rst b/For_developers/Sphinx/source/index.rst
index bea0b26..30308dd 100644
--- a/For_developers/Sphinx/source/index.rst
+++ b/For_developers/Sphinx/source/index.rst
@@ -41,9 +41,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="documentation.html">Documentation</a></h2>
<ul>
- <li><a href="">Content</a></li>
- <li><a href="">Configuration</a></li>
- <li><a href="">Tutorials</a></li>
+ <li><a href="Documentation/overview.html">Overview</a></li>
+ <li><a href="Documentation/input.html">Control & Input Data</a></li>
+ <li><a href="Documentation/output.html">Output Data</a></li>
</ul>
</td>
</tr>
@@ -54,9 +54,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="quick_start.html">Quick Start</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="quick_start.html#job-preparation">Job preparation</a></li>
+ <li><a href="quick_start.html#selection-and-adjustment-of-control-files">Handling CONTROL files</a></li>
+ <li><a href="quick_start.html#hints-for-definition-of-some-parameter-combinations">Hints on parameter combinations</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -65,9 +65,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="evaluation.html">Evaluation</a></h2>
<ul>
- <li><a href="">Code</a></li>
- <li><a href="">Functionality</a></li>
- <li><a href="">Regression</a></li>
+ <li><a href="Evaluation/staticcode.html">Code</a></li>
+ <li><a href="Evaluation/testcases.html">Functionality</a></li>
+ <li><a href="Evaluation/metrics.html">Regression</a></li>
</ul>
</td>
<td style="width:30%;height:150px;">
@@ -76,9 +76,9 @@ Welcome to ``flex_extract``'s user documentation!
</div>
<h2><a href="dev_guide.html">Developer</a></h2>
<ul>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
- <li><a href="">...</a></li>
+ <li><a href="Developers/gen_docu.html">Update Documentation</a></li>
+ <li><a href=""></a><Placeholder></li>
+ <li><a href=""></a><Placeholder></li>
</ul>
</td>
</tr>
--
GitLab