diff --git a/Documentation/html/Documentation/Api/api_python.html b/Documentation/html/Documentation/Api/api_python.html
index 69fc6c5bda714351a9aef03f8cc2095b7d503911..ddf3bf648c45021210910aaad608241f858e1371 100644
--- a/Documentation/html/Documentation/Api/api_python.html
+++ b/Documentation/html/Documentation/Api/api_python.html
@@ -247,10 +247,10 @@ command line.</p>
</dd></dl>
<dl class="function">
-<dt id="install.del_convert_build">
-<code class="sig-prename descclassname">install.</code><code class="sig-name descname">del_convert_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#del_convert_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.del_convert_build" title="Permalink to this definition">¶</a></dt>
+<dt id="install.del_fortran_build">
+<code class="sig-prename descclassname">install.</code><code class="sig-name descname">del_fortran_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#del_fortran_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.del_fortran_build" title="Permalink to this definition">¶</a></dt>
<dd><p>Clean up the Fortran source directory and remove all
-build files (e.g. *.o, *.mod and CONVERT2)</p>
+build files (e.g. *.o, *.mod and FORTRAN EXECUTABLE)</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><p><strong>src_path</strong> (<em>str</em>) – Path to the fortran source directory.</p>
@@ -325,20 +325,6 @@ environment.</p></li>
</dl>
</dd></dl>
-<dl class="function">
-<dt id="install.mk_convert_build">
-<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_convert_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em>, <em class="sig-param">makefile</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_convert_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_convert_build" title="Permalink to this definition">¶</a></dt>
-<dd><p>Compiles the Fortran code and generates the executable.</p>
-<dl class="field-list simple">
-<dt class="field-odd">Parameters</dt>
-<dd class="field-odd"><ul class="simple">
-<li><p><strong>src_path</strong> (<em>str</em>) – Path to the fortran source directory.</p></li>
-<li><p><strong>makefile</strong> (<em>str</em>) – The name of the makefile which should be used.</p></li>
-</ul>
-</dd>
-</dl>
-</dd></dl>
-
<dl class="function">
<dt id="install.mk_env_vars">
<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_env_vars</code><span class="sig-paren">(</span><em class="sig-param">ecuid</em>, <em class="sig-param">ecgid</em>, <em class="sig-param">gateway</em>, <em class="sig-param">destination</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_env_vars"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_env_vars" title="Permalink to this definition">¶</a></dt>
@@ -358,6 +344,20 @@ from ECMWF server to local gateway server.</p></li>
</dl>
</dd></dl>
+<dl class="function">
+<dt id="install.mk_fortran_build">
+<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_fortran_build</code><span class="sig-paren">(</span><em class="sig-param">src_path</em>, <em class="sig-param">makefile</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_fortran_build"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_fortran_build" title="Permalink to this definition">¶</a></dt>
+<dd><p>Compiles the Fortran code and generates the executable.</p>
+<dl class="field-list simple">
+<dt class="field-odd">Parameters</dt>
+<dd class="field-odd"><ul class="simple">
+<li><p><strong>src_path</strong> (<em>str</em>) – Path to the fortran source directory.</p></li>
+<li><p><strong>makefile</strong> (<em>str</em>) – The name of the makefile which should be used.</p></li>
+</ul>
+</dd>
+</dl>
+</dd></dl>
+
<dl class="function">
<dt id="install.mk_job_template">
<code class="sig-prename descclassname">install.</code><code class="sig-name descname">mk_job_template</code><span class="sig-paren">(</span><em class="sig-param">ecuid</em>, <em class="sig-param">ecgid</em>, <em class="sig-param">fp_root</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/install.html#mk_job_template"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#install.mk_job_template" title="Permalink to this definition">¶</a></dt>
@@ -448,11 +448,11 @@ or “queue=cca”.</p>
<dl class="field-list simple">
<dt class="field-odd">Parameters</dt>
<dd class="field-odd"><ul class="simple">
-<li><p><strong>jtemplate</strong> (<em>str</em>) – Job template file from sub-directory “_templates” for
+<li><p><strong>jtemplate</strong> (<em>str</em>) – Job template file from sub-directory “Templates” for
submission to ECMWF. It contains all necessary
module and variable settings for the ECMWF environment as well as
the job call and mail report instructions.
-Default is “job.temp”.</p></li>
+Default is _config.TEMPFILE_JOB.</p></li>
<li><p><strong>job_file</strong> (<em>str</em>) – Path to the job script file.</p></li>
<li><p><strong>clist</strong> (<em>list of str</em>) – Contains all necessary parameters for ECMWF CONTROL file.</p></li>
</ul>
@@ -471,7 +471,7 @@ Default is “job.temp”.</p></li>
submission to ECMWF. It contains all necessary
module and variable settings for the ECMWF environment as well as
the job call and mail report instructions.
-Default is “job.temp”.</p></li>
+Default is _config.TEMPFILE_JOB.</p></li>
<li><p><strong>c</strong> (<a class="reference internal" href="#ControlFile.ControlFile" title="ControlFile.ControlFile"><em>ControlFile</em></a>) – Contains all the parameters of CONTROL file and
command line.</p></li>
<li><p><strong>queue</strong> (<em>str</em>) – Name of queue for submission to ECMWF (e.g. ecgate or cca )</p></li>
@@ -1111,7 +1111,7 @@ _config.PATH_FORTRAN_SRC.</p>
<dt id="ControlFile.ControlFile.makefile">
<code class="sig-name descname">makefile</code><a class="headerlink" href="#ControlFile.ControlFile.makefile" title="Permalink to this definition">¶</a></dt>
<dd><p>Name of the makefile to be used for the Fortran program.
-Default value is ‘Makefile.gfortran’.</p>
+Default value is None.</p>
<dl class="field-list simple">
<dt class="field-odd">Type</dt>
<dd class="field-odd"><p>str</p>
@@ -1908,7 +1908,7 @@ Default is “my.idx”.</p></li>
<dl class="method">
<dt id="GribUtil.GribUtil.set_keys">
-<code class="sig-name descname">set_keys</code><span class="sig-paren">(</span><em class="sig-param">fromfile</em>, <em class="sig-param">keynames</em>, <em class="sig-param">keyvalues</em>, <em class="sig-param">wherekeynames</em>, <em class="sig-param">wherekeyvalues</em>, <em class="sig-param">filemode='wb'</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
+<code class="sig-name descname">set_keys</code><span class="sig-paren">(</span><em class="sig-param">fromfile</em>, <em class="sig-param">filemode='wb'</em>, <em class="sig-param">keynames=[]</em>, <em class="sig-param">keyvalues=[]</em>, <em class="sig-param">wherekeynames=[]</em>, <em class="sig-param">wherekeyvalues=[]</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/GribUtil.html#GribUtil.set_keys"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#GribUtil.GribUtil.set_keys" title="Permalink to this definition">¶</a></dt>
<dd><p>Opens the file to read the grib messages and then write
the selected messages (with wherekeys) to a new output file.
Also, the keyvalues of the passed list of keynames are set.</p>
@@ -3312,7 +3312,7 @@ of is None otherwise.</p></li>
<dl class="function">
<dt id="checks.check_public">
-<code class="sig-prename descclassname">checks.</code><code class="sig-name descname">check_public</code><span class="sig-paren">(</span><em class="sig-param">public</em>, <em class="sig-param">dataset</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_public"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_public" title="Permalink to this definition">¶</a></dt>
+<code class="sig-prename descclassname">checks.</code><code class="sig-name descname">check_public</code><span class="sig-paren">(</span><em class="sig-param">public</em>, <em class="sig-param">dataset</em>, <em class="sig-param">marsclass</em><span class="sig-paren">)</span><a class="reference internal" href="../../_modules/checks.html#check_public"><span class="viewcode-link">[source]</span></a><a class="headerlink" href="#checks.check_public" title="Permalink to this definition">¶</a></dt>
<dd><p>Check wether the dataset parameter is set to a
public data set.</p>
<dl class="field-list simple">
diff --git a/Documentation/html/Documentation/Input/run.html b/Documentation/html/Documentation/Input/run.html
index 90abff872bfbbe5c0a6d7f7d7fe51d3fa9c512a7..dfc1f9be68343191723a3d936c12de209ad480f6 100644
--- a/Documentation/html/Documentation/Input/run.html
+++ b/Documentation/html/Documentation/Input/run.html
@@ -380,7 +380,7 @@ the command line parameters, and the so-called <code class="docutils literal not
<span class="c1"># guarantee necessary parameters were set and consistent.</span>
<span class="c1">#</span>
<span class="c1"># @Licence:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
<span class="c1">#</span>
@@ -406,7 +406,7 @@ the command line parameters, and the so-called <code class="docutils literal not
<span class="nv">INPUTDIR</span><span class="o">=</span>None
<span class="nv">OUTPUTDIR</span><span class="o">=</span>None
<span class="nv">PP_ID</span><span class="o">=</span>None
-<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">'job.temp'</span>
+<span class="nv">JOB_TEMPLATE</span><span class="o">=</span><span class="s1">'submitscript.template'</span>
<span class="nv">CONTROLFILE</span><span class="o">=</span><span class="s1">'CONTROL_EA5'</span>
<span class="nv">DEBUG</span><span class="o">=</span><span class="m">0</span>
<span class="nv">REQUEST</span><span class="o">=</span><span class="m">2</span>
@@ -424,6 +424,12 @@ the command line parameters, and the so-called <code class="docutils literal not
<span class="c1"># INITIALIZE EMPTY PARAMETERLIST</span>
<span class="nv">parameterlist</span><span class="o">=</span><span class="s2">""</span>
+<span class="c1"># CHECK IF ON ECMWF SERVER; </span>
+<span class="k">if</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"ecgb"</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"cca"</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"ccb"</span>* <span class="o">]]</span><span class="p">;</span> <span class="k">then</span>
+<span class="c1"># LOAD PYTHON3 MODULE</span>
+ module load python3
+<span class="k">fi</span>
+
<span class="c1"># CHECK FOR MORE PARAMETER </span>
<span class="k">if</span> <span class="o">[</span> -n <span class="s2">"</span><span class="nv">$START_DATE</span><span class="s2">"</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
<span class="nv">parameterlist</span><span class="o">+=</span><span class="s2">" --start_date=</span><span class="nv">$START_DATE</span><span class="s2">"</span>
diff --git a/Documentation/html/Documentation/Input/setup.html b/Documentation/html/Documentation/Input/setup.html
index 9cdd15428c8cb3925b91551b2ee2d63a8ebab1fd..044f102e9e638c1ac74ec4047173a665177102fe 100644
--- a/Documentation/html/Documentation/Input/setup.html
+++ b/Documentation/html/Documentation/Input/setup.html
@@ -306,7 +306,7 @@ It calls the top-level Python script <code class="docutils literal notranslate">
<span class="c1"># guarantee necessary parameters were set.</span>
<span class="c1">#</span>
<span class="c1"># @Licence:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
<span class="c1">#</span>
@@ -341,6 +341,12 @@ It calls the top-level Python script <code class="docutils literal notranslate">
<span class="c1"># INITIALIZE EMPTY PARAMETERLIST</span>
<span class="nv">parameterlist</span><span class="o">=</span><span class="s2">""</span>
+<span class="c1"># CHECK IF ON ECMWF SERVER; </span>
+<span class="k">if</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"ecgb"</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"cca"</span>* <span class="o">]]</span> <span class="o">||</span> <span class="o">[[</span> <span class="nv">$HOST</span> <span class="o">==</span> *<span class="s2">"ccb"</span>* <span class="o">]]</span><span class="p">;</span> <span class="k">then</span>
+<span class="c1"># LOAD PYTHON3 MODULE</span>
+ module load python3
+<span class="k">fi</span>
+
<span class="c1"># DEFAULT PARAMETERLIST</span>
<span class="k">if</span> <span class="o">[</span> -n <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
<span class="nv">parameterlist</span><span class="o">=</span><span class="s2">" --target=</span><span class="nv">$TARGET</span><span class="s2">"</span>
@@ -351,7 +357,7 @@ It calls the top-level Python script <code class="docutils literal notranslate">
<span class="k">fi</span>
<span class="c1"># CHECK FOR MORE PARAMETER </span>
-<span class="k">if</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"ecgate"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"cca"</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
+<span class="k">if</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"ecgate"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"cca"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$TARGET</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"ccb"</span> <span class="o">]</span><span class="p">;</span> <span class="k">then</span>
<span class="c1"># check if necessary Parameters are set</span>
<span class="k">if</span> <span class="o">[</span> -z <span class="s2">"</span><span class="nv">$ECUID</span><span class="s2">"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> -z <span class="s2">"</span><span class="nv">$ECGID</span><span class="s2">"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$ECUID</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"<username>"</span> <span class="o">]</span> <span class="o">||</span> <span class="o">[</span> <span class="s2">"</span><span class="nv">$ECGID</span><span class="s2">"</span> <span class="o">==</span> <span class="s2">"<groupID>"</span> <span class="o">]</span> <span class="p">;</span> <span class="k">then</span>
<span class="nb">echo</span> <span class="s2">"ERROR: At least one of the following parameters are not properly set: ECUID or ECGID!"</span>
diff --git a/Documentation/html/Documentation/Input/templates.html b/Documentation/html/Documentation/Input/templates.html
index cf6f3916cbf9f1e73cebcb798c73e073f39236c5..12be59ab473d6cbdf8017edec64fc43e3e165a2b 100644
--- a/Documentation/html/Documentation/Input/templates.html
+++ b/Documentation/html/Documentation/Input/templates.html
@@ -364,20 +364,20 @@ for details see <a class="reference external" href="https://confluence.ecmwf.int
<span class="nb">export</span> <span class="nv">VERSION</span><span class="o">=</span><span class="m">7</span>.1
<span class="k">case</span> <span class="nv">$$</span><span class="o">{</span>HOST<span class="o">}</span> in
*ecg*<span class="o">)</span>
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
- <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
- <span class="p">;;</span>
- *cca*<span class="o">)</span>
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
- <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="si">${</span><span class="nv">TMPDIR</span><span class="si">}</span>
- <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
+ <span class="p">;;</span>
+ *cca*<span class="o">)</span>
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ <span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="si">${</span><span class="nv">TMPDIR</span><span class="si">}</span>
+ <span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="si">${</span><span class="nv">PATH</span><span class="si">}</span>:<span class="si">${</span><span class="nv">HOME</span><span class="si">}</span>/flex_extract_v7.1/Source/Python
<span class="p">;;</span>
<span class="k">esac</span>
@@ -448,18 +448,18 @@ submit.py --controlfile<span class="o">=</span><span class="nv">$$</span><span c
<span class="nb">export</span> <span class="nv">VERSION</span><span class="o">=</span><span class="nv">$version_number</span>
<span class="k">case</span> <span class="nv">$$$$</span><span class="o">{</span>HOST<span class="o">}</span> in
*ecg*<span class="o">)</span>
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
<span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
<span class="p">;;</span>
*cca*<span class="o">)</span>
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
<span class="nb">export</span> <span class="nv">SCRATCH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>TMPDIR<span class="o">}</span>
<span class="nb">export</span> <span class="nv">PATH</span><span class="o">=</span><span class="nv">$$$$</span><span class="o">{</span>PATH<span class="o">}</span>:<span class="nv">$fp_root_path</span>
<span class="p">;;</span>
diff --git a/Documentation/html/Installation/gateway.html b/Documentation/html/Installation/gateway.html
index fefd970414249f8b6aff5c377142a448ac326bef..94bf4cc812fda10ba74776ba6ffae4aadc77ba11 100644
--- a/Documentation/html/Installation/gateway.html
+++ b/Documentation/html/Installation/gateway.html
@@ -295,12 +295,12 @@ You should get an email with subject <span class="s2">"flexcompile"</s
</pre></div>
</div>
<p><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a “SUCCESS” statement in the last line:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. <span class="m">1</span> <username> at <span class="m">20</span> Mar <span class="m">8</span> <span class="m">14</span>:11 calc_etadot -> calc_etadot_fast.out
diff --git a/Documentation/html/Installation/local.html b/Documentation/html/Installation/local.html
index 0008fb61e6be01ab5a111a42df1beb0d82049b4c..62dadeb5e373680074d20d75e396c39ce4783ec8 100644
--- a/Documentation/html/Installation/local.html
+++ b/Documentation/html/Installation/local.html
@@ -427,21 +427,21 @@ with an editor and adapt the installation parameters in the section labelled wit
</div>
<p>to start the installation. You should see the following standard output.</p>
<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span><span class="c1"># Output of setup.sh</span>
- WARNING: installdir has not been specified
- flex_extract will be installed in here by compiling the Fortran <span class="nb">source</span> in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
- Install flex_extract_v7.1 software at <span class="nb">local</span> in directory <path-to-flex_extract>/flex_extract_v7.1
-
- Using makefile: makefile_local_gfortran
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
- gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
- gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
- ln -sf calc_etadot_fast.out calc_etadot
-
- lrwxrwxrwx. <span class="m">1</span> <username> tmc <span class="m">20</span> <span class="m">15</span>. Mär <span class="m">13</span>:31 ./calc_etadot -> calc_etadot_fast.out
+WARNING: installdir has not been specified
+flex_extract will be installed in here by compiling the Fortran <span class="nb">source</span> in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
+Install flex_extract_v7.1 software at <span class="nb">local</span> in directory <path-to-flex_extract>/flex_extract_v7.1
+
+Using makefile: makefile_local_gfortran
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
+gfortran -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
+gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march<span class="o">=</span>native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
+ln -sf calc_etadot_fast.out calc_etadot
+
+lrwxrwxrwx. <span class="m">1</span> <username> tmc <span class="m">20</span> <span class="m">15</span>. Mär <span class="m">13</span>:31 ./calc_etadot -> calc_etadot_fast.out
</pre></div>
</div>
</div>
diff --git a/Documentation/html/Installation/remote.html b/Documentation/html/Installation/remote.html
index baf068eb4f687f5310bba4f6aa2ab070003fafba..1358ce011a4ef2c4272ea8a9d07880ec5557edb5 100644
--- a/Documentation/html/Installation/remote.html
+++ b/Documentation/html/Installation/remote.html
@@ -332,12 +332,12 @@ You should get an email with subject <span class="s2">"flexcompile"</s
</pre></div>
</div>
<p><code class="docutils literal notranslate"><span class="pre">Flex_extract</span></code> automatically uses the email address connected to the user account on ECMWF servers. The email content should look like this with a “SUCCESS” statement in the last line:</p>
-<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
-gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
+<div class="highlight-bash notranslate"><div class="highlight"><pre><span></span>gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./rwgrib2.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./phgrreal.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./grphreal.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./ftrafo.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./calc_etadot.f90
+gfortran -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert<span class="o">=</span>big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march<span class="o">=</span>native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. <span class="m">1</span> <username> at <span class="m">20</span> Mar <span class="m">8</span> <span class="m">14</span>:11 calc_etadot -> calc_etadot_fast.out
diff --git a/Documentation/html/Support/known_bugs_issues.html b/Documentation/html/Support/known_bugs_issues.html
index 1bd969f8ea2a16fcf6ccf45e6e520adb0a3564c6..e0aec207bfe562b37ec7eed89e087771e1be4903 100644
--- a/Documentation/html/Support/known_bugs_issues.html
+++ b/Documentation/html/Support/known_bugs_issues.html
@@ -190,7 +190,7 @@
ECCODES ERROR : get: pv Passed array is too small
... ERROR CODE: <span class="m">250</span>
... ERROR MESSAGE:
- Command <span class="s1">'['</span><path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot<span class="s1">']'</span> returned non-zero <span class="nb">exit</span> status <span class="m">250</span>.
+ Command <span class="s1">'['</span><path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot<span class="s1">']'</span> returned non-zero <span class="nb">exit</span> status <span class="m">250</span>.
... FORTRAN PROGRAM FAILED!
</pre></div>
</div>
diff --git a/Documentation/html/_modules/ControlFile.html b/Documentation/html/_modules/ControlFile.html
index 91d39a8c447140f2bef357509cddcb8d4d194efc..cce975fb272c3c6ad2e3cf43da7bcc1a94ffeca7 100644
--- a/Documentation/html/_modules/ControlFile.html
+++ b/Documentation/html/_modules/ControlFile.html
@@ -180,9 +180,11 @@
<span class="c1"># conditional statements and set default values )</span>
<span class="c1"># - divided assignment of attributes and the check of conditions</span>
<span class="c1"># - outsourced the commandline argument assignments to control attributes</span>
+<span class="c1"># June 2020 - Anne Philipp</span>
+<span class="c1"># - update default makefile to None</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -428,7 +430,7 @@
<span class="sd"> makefile : str</span>
<span class="sd"> Name of the makefile to be used for the Fortran program.</span>
-<span class="sd"> Default value is 'Makefile.gfortran'.</span>
+<span class="sd"> Default value is None.</span>
<span class="sd"> destination : str</span>
<span class="sd"> The remote destination which is used to transfer files</span>
@@ -563,7 +565,7 @@
<span class="bp">self</span><span class="o">.</span><span class="n">flexextractdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span>
<span class="bp">self</span><span class="o">.</span><span class="n">exedir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FORTRAN_SRC</span>
<span class="bp">self</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="kc">None</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">'Makefile.gfortran'</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">destination</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">gateway</span> <span class="o">=</span> <span class="kc">None</span>
<span class="bp">self</span><span class="o">.</span><span class="n">ecuid</span> <span class="o">=</span> <span class="kc">None</span>
@@ -775,7 +777,7 @@
<span class="n">check_request</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">request</span><span class="p">,</span>
<span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">inputdir</span><span class="p">,</span> <span class="n">_config</span><span class="o">.</span><span class="n">FILE_MARS_REQUESTS</span><span class="p">))</span>
- <span class="n">check_public</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">public</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dataset</span><span class="p">)</span>
+ <span class="n">check_public</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">public</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">dataset</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">marsclass</span><span class="p">)</span>
<span class="bp">self</span><span class="o">.</span><span class="n">type</span> <span class="o">=</span> <span class="n">check_type</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">type</span><span class="p">,</span> <span class="bp">self</span><span class="o">.</span><span class="n">step</span><span class="p">)</span>
diff --git a/Documentation/html/_modules/EcFlexpart.html b/Documentation/html/_modules/EcFlexpart.html
index a0b36add3577dbfbd67f621242c3a1432f4e28bd..abea175c2519d85dfb1739b938eb284fc8a18994 100644
--- a/Documentation/html/_modules/EcFlexpart.html
+++ b/Documentation/html/_modules/EcFlexpart.html
@@ -200,7 +200,7 @@
<span class="c1"># duplication, easier testing)</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -1577,7 +1577,7 @@
<span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'perturbationNumber'</span><span class="p">,</span> <span class="s1">'date'</span><span class="p">,</span> <span class="s1">'time'</span><span class="p">,</span>
<span class="s1">'stepRange'</span><span class="p">,</span> <span class="s1">'values'</span><span class="p">],</span>
<span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="nb">int</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">strftime</span><span class="p">(</span><span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)),</span>
- <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]],</span>
+ <span class="n">date</span><span class="o">.</span><span class="n">hour</span><span class="o">*</span><span class="mi">100</span><span class="p">,</span> <span class="mi">0</span><span class="p">,</span> <span class="n">lsp_new_np</span><span class="p">[</span><span class="n">inumb</span><span class="p">,</span> <span class="p">:,</span> <span class="n">it</span><span class="p">]]</span>
<span class="p">)</span>
<span class="n">fluxfile</span><span class="o">.</span><span class="n">set_keys</span><span class="p">(</span><span class="n">tmpfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">,</span>
<span class="n">wherekeynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span>
@@ -1640,12 +1640,9 @@
<span class="sd"> '''</span>
<span class="n">gribfile</span> <span class="o">=</span> <span class="n">GribUtil</span><span class="p">(</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">inputdir</span><span class="p">,</span> <span class="s1">'rr_grib_dummy.grb'</span><span class="p">))</span>
-
- <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">)</span>
-
- <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">],</span>
- <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'ab'</span><span class="p">)</span>
+
+ <span class="n">gribfile</span><span class="o">.</span><span class="n">copy_dummy_msg</span><span class="p">(</span><span class="n">ifile</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[</span><span class="s1">'paramId'</span><span class="p">,</span><span class="s1">'paramId'</span><span class="p">],</span>
+ <span class="n">keyvalues</span><span class="o">=</span><span class="p">[</span><span class="mi">142</span><span class="p">,</span><span class="mi">143</span><span class="p">],</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">)</span>
<span class="k">return</span>
@@ -1883,10 +1880,17 @@
<span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">pwd</span><span class="p">)</span>
<span class="c1"># ============================================================================================</span>
<span class="c1"># create name of final output file, e.g. EN13040500 (ENYYMMDDHH)</span>
+ <span class="c1"># for CERA-20C we need all 4 digits for the year sinc 1900 - 2010</span>
<span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">purefc</span><span class="p">:</span>
- <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">cstep</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">'EP'</span><span class="p">:</span>
+ <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">cstep</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">8</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">ctime</span> <span class="o">+</span> <span class="s1">'.'</span> <span class="o">+</span> <span class="n">cstep</span>
<span class="k">else</span><span class="p">:</span>
- <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">'EP'</span><span class="p">:</span>
+ <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">suffix</span> <span class="o">=</span> <span class="n">cdate_hour</span><span class="p">[</span><span class="mi">2</span><span class="p">:</span><span class="mi">10</span><span class="p">]</span>
<span class="c1"># if necessary, add ensemble member number to filename suffix</span>
<span class="k">if</span> <span class="s1">'number'</span> <span class="ow">in</span> <span class="n">index_keys</span><span class="p">:</span>
@@ -1909,7 +1913,10 @@
<span class="s1">'/OG_OROLSM__SL.*.'</span> <span class="o">+</span>
<span class="n">c</span><span class="o">.</span><span class="n">ppid</span> <span class="o">+</span>
<span class="s1">'*'</span><span class="p">)[</span><span class="mi">0</span><span class="p">])</span>
- <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">'flux'</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">marsclass</span> <span class="o">==</span> <span class="s1">'EP'</span><span class="p">:</span>
+ <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">'flux'</span> <span class="o">+</span> <span class="n">suffix</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">fluxfile</span> <span class="o">=</span> <span class="s1">'flux'</span> <span class="o">+</span> <span class="n">cdate</span><span class="p">[</span><span class="mi">0</span><span class="p">:</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">suffix</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">cwc</span><span class="p">:</span>
<span class="n">flist</span> <span class="o">=</span> <span class="p">[</span><span class="s1">'fort.15'</span><span class="p">,</span> <span class="n">fluxfile</span><span class="p">,</span> <span class="s1">'fort.16'</span><span class="p">,</span> <span class="n">orolsm</span><span class="p">]</span>
<span class="k">else</span><span class="p">:</span>
diff --git a/Documentation/html/_modules/GribUtil.html b/Documentation/html/_modules/GribUtil.html
index a6b59b2139981870387478bb9df3aeef9028dd11..70164e3118c130d4825ca7d249daf174eaf90d7c 100644
--- a/Documentation/html/_modules/GribUtil.html
+++ b/Documentation/html/_modules/GribUtil.html
@@ -174,7 +174,7 @@
<span class="c1"># - changed some naming</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -283,8 +283,8 @@
<span class="k">return</span> <span class="n">return_list</span></div>
-<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a> <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">keynames</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">,</span> <span class="n">wherekeynames</span><span class="p">,</span>
- <span class="n">wherekeyvalues</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">):</span>
+<div class="viewcode-block" id="GribUtil.set_keys"><a class="viewcode-back" href="../Documentation/Api/api_python.html#GribUtil.GribUtil.set_keys">[docs]</a> <span class="k">def</span> <span class="nf">set_keys</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">fromfile</span><span class="p">,</span> <span class="n">filemode</span><span class="o">=</span><span class="s1">'wb'</span><span class="p">,</span> <span class="n">keynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">keyvalues</span><span class="o">=</span><span class="p">[],</span>
+ <span class="n">wherekeynames</span><span class="o">=</span><span class="p">[],</span> <span class="n">wherekeyvalues</span><span class="o">=</span><span class="p">[]):</span>
<span class="sd">'''Opens the file to read the grib messages and then write</span>
<span class="sd"> the selected messages (with wherekeys) to a new output file.</span>
<span class="sd"> Also, the keyvalues of the passed list of keynames are set.</span>
@@ -323,34 +323,37 @@
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Give a value for each keyname!"</span><span class="p">)</span>
<span class="n">fout</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filenames</span><span class="p">,</span> <span class="n">filemode</span><span class="p">)</span>
-
- <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">fromfile</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
+ <span class="c1"># print(fout)</span>
+ <span class="n">fin</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">fromfile</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span>
+ <span class="c1"># print(fin)</span>
+ <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
<span class="n">gid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
-
+ <span class="c1"># print('test')</span>
+ <span class="k">if</span> <span class="n">gid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+ <span class="k">break</span>
+
<span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
- <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
- <span class="k">for</span> <span class="n">wherekey</span> <span class="ow">in</span> <span class="n">wherekeynames</span><span class="p">:</span>
+ <span class="c1">#print(str(codes_get(gid,'paramId')))</span>
+ <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">wherekey</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">wherekeynames</span><span class="p">):</span>
<span class="k">if</span> <span class="ow">not</span> <span class="n">codes_is_defined</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">wherekey</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"wherekey was not defined"</span><span class="p">)</span>
<span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">wherekeyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">==</span>
<span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">wherekey</span><span class="p">))))</span>
- <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
<span class="k">if</span> <span class="n">select</span><span class="p">:</span>
- <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
- <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keynames</span><span class="p">:</span>
+ <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">keynames</span><span class="p">):</span>
<span class="k">if</span> <span class="n">key</span> <span class="o">==</span> <span class="s1">'values'</span><span class="p">:</span>
<span class="n">codes_set_values</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">codes_set</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">,</span> <span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span>
- <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
<span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
<span class="n">codes_release</span><span class="p">(</span><span class="n">gid</span><span class="p">)</span>
<span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+ <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
<span class="k">return</span></div>
@@ -390,21 +393,24 @@
<span class="k">if</span> <span class="nb">len</span><span class="p">(</span><span class="n">keynames</span><span class="p">)</span> <span class="o">!=</span> <span class="nb">len</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Give a value for each keyname!"</span><span class="p">)</span>
-
<span class="n">fout</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">filenames</span><span class="p">,</span> <span class="n">filemode</span><span class="p">)</span>
-
+ <span class="n">fin</span> <span class="o">=</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename_in</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span>
+
<span class="n">fields</span> <span class="o">=</span> <span class="mi">0</span>
-
- <span class="k">with</span> <span class="nb">open</span><span class="p">(</span><span class="n">filename_in</span><span class="p">,</span> <span class="s1">'rb'</span><span class="p">)</span> <span class="k">as</span> <span class="n">fin</span><span class="p">:</span>
- <span class="k">if</span> <span class="n">fields</span> <span class="o">>=</span> <span class="mi">1</span><span class="p">:</span>
+ <span class="k">while</span> <span class="kc">True</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">fields</span> <span class="o">>=</span> <span class="nb">len</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">):</span>
<span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+ <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
<span class="k">return</span>
-
+
<span class="n">gid</span> <span class="o">=</span> <span class="n">codes_grib_new_from_file</span><span class="p">(</span><span class="n">fin</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">gid</span> <span class="ow">is</span> <span class="kc">None</span><span class="p">:</span>
+ <span class="k">break</span>
- <span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
- <span class="n">i</span> <span class="o">=</span> <span class="mi">0</span>
- <span class="k">for</span> <span class="n">key</span> <span class="ow">in</span> <span class="n">keynames</span><span class="p">:</span>
+ <span class="k">for</span> <span class="n">i</span><span class="p">,</span> <span class="n">key</span> <span class="ow">in</span> <span class="nb">enumerate</span><span class="p">(</span><span class="n">keynames</span><span class="p">):</span>
+
+ <span class="n">select</span> <span class="o">=</span> <span class="kc">True</span>
+
<span class="k">if</span> <span class="ow">not</span> <span class="n">codes_is_defined</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">Exception</span><span class="p">(</span><span class="s2">"Key was not defined"</span><span class="p">)</span>
@@ -414,15 +420,15 @@
<span class="k">else</span><span class="p">:</span>
<span class="n">select</span> <span class="o">=</span> <span class="p">(</span><span class="n">select</span> <span class="ow">and</span> <span class="p">(</span><span class="nb">str</span><span class="p">(</span><span class="n">keyvalues</span><span class="p">[</span><span class="n">i</span><span class="p">])</span> <span class="o">!=</span>
<span class="nb">str</span><span class="p">(</span><span class="n">codes_get</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">key</span><span class="p">))))</span>
- <span class="n">i</span> <span class="o">+=</span> <span class="mi">1</span>
-
- <span class="k">if</span> <span class="n">select</span><span class="p">:</span>
- <span class="n">fields</span> <span class="o">=</span> <span class="n">fields</span> <span class="o">+</span> <span class="mi">1</span>
- <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
-
+
+ <span class="k">if</span> <span class="n">select</span><span class="p">:</span>
+ <span class="n">fields</span> <span class="o">=</span> <span class="n">fields</span> <span class="o">+</span> <span class="mi">1</span>
+ <span class="n">codes_write</span><span class="p">(</span><span class="n">gid</span><span class="p">,</span> <span class="n">fout</span><span class="p">)</span>
+
<span class="n">codes_release</span><span class="p">(</span><span class="n">gid</span><span class="p">)</span>
<span class="n">fout</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
+ <span class="n">fin</span><span class="o">.</span><span class="n">close</span><span class="p">()</span>
<span class="k">return</span></div>
diff --git a/Documentation/html/_modules/MarsRetrieval.html b/Documentation/html/_modules/MarsRetrieval.html
index 365955295652928a7f959de4ba8a857800bb4481..3fe5491d30a595934482c4a1f7f36d28442c5dfb 100644
--- a/Documentation/html/_modules/MarsRetrieval.html
+++ b/Documentation/html/_modules/MarsRetrieval.html
@@ -181,7 +181,7 @@
<span class="c1"># - added writing of mars request attributes to a csv file</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -607,6 +607,75 @@
<span class="n">f</span><span class="o">.</span><span class="n">write</span><span class="p">(</span><span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="p">)</span>
<span class="k">return</span></div>
+
+ <span class="k">def</span> <span class="nf">_convert_to_cdsera5_sfc_request</span><span class="p">(</span><span class="bp">self</span><span class="p">,</span> <span class="n">attrs</span><span class="p">):</span>
+ <span class="sd">'''</span>
+<span class="sd"> The keywords and values for the single level download</span>
+<span class="sd"> with CDS API is different from MARS. This function </span>
+<span class="sd"> converts the old request keywords to the new ones.</span>
+<span class="sd"> </span>
+<span class="sd"> Example request for single level downloads in CDS API</span>
+<span class="sd"> </span>
+<span class="sd"> retrieve(</span>
+<span class="sd"> 'reanalysis-era5-single-levels',</span>
+<span class="sd"> {</span>
+<span class="sd"> 'product_type': 'reanalysis',</span>
+<span class="sd"> 'variable': 'total_precipitation',</span>
+<span class="sd"> 'year': '2019',</span>
+<span class="sd"> 'month': '01',</span>
+<span class="sd"> 'day': '01',</span>
+<span class="sd"> 'time': '00:00',</span>
+<span class="sd"> 'format': 'grib',</span>
+<span class="sd"> 'grid':[1.0, 1.0],</span>
+<span class="sd"> 'area': [</span>
+<span class="sd"> 45, 0, 43,</span>
+<span class="sd"> 12,</span>
+<span class="sd"> ],</span>
+<span class="sd"> },</span>
+<span class="sd"> 'download.grib')</span>
+<span class="sd"> </span>
+<span class="sd"> Parameters</span>
+<span class="sd"> ----------</span>
+<span class="sd"> attrs : dict</span>
+<span class="sd"> Dictionary of the mars request parameters.</span>
+
+<span class="sd"> Return</span>
+<span class="sd"> ------</span>
+
+<span class="sd"> '''</span>
+ <span class="kn">from</span> <span class="nn">datetime</span> <span class="kn">import</span> <span class="n">datetime</span><span class="p">,</span> <span class="n">timedelta</span>
+ <span class="n">newattrs</span> <span class="o">=</span> <span class="p">{}</span>
+
+ <span class="k">if</span> <span class="s1">'/'</span> <span class="ow">in</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]:</span>
+ <span class="n">year</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+ <span class="n">month</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+ <span class="n">day</span> <span class="o">=</span> <span class="nb">set</span><span class="p">()</span>
+ <span class="n">start</span><span class="p">,</span><span class="n">end</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'date'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)[::</span><span class="mi">2</span><span class="p">]</span>
+ <span class="n">sdate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">start</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
+ <span class="n">edate</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">end</span><span class="p">,</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
+ <span class="n">date</span> <span class="o">=</span> <span class="n">sdate</span>
+ <span class="k">while</span> <span class="n">date</span> <span class="o"><=</span> <span class="n">edate</span><span class="p">:</span>
+ <span class="n">year</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">year</span><span class="p">)</span>
+ <span class="n">month</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">month</span><span class="p">)</span>
+ <span class="n">day</span><span class="o">.</span><span class="n">add</span><span class="p">(</span><span class="n">date</span><span class="o">.</span><span class="n">day</span><span class="p">)</span>
+ <span class="n">date</span> <span class="o">=</span> <span class="n">date</span> <span class="o">+</span> <span class="n">timedelta</span><span class="p">(</span><span class="n">days</span><span class="o">=</span><span class="mi">1</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'year'</span><span class="p">]</span> <span class="o">=</span><span class="nb">list</span><span class="p">(</span><span class="n">year</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'month'</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">month</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'day'</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="n">day</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">date</span> <span class="o">=</span> <span class="n">datetime</span><span class="o">.</span><span class="n">strptime</span><span class="p">(</span><span class="n">attrs</span><span class="p">[</span><span class="s1">'date'</span><span class="p">],</span> <span class="s1">'%Y%m</span><span class="si">%d</span><span class="s1">'</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'year'</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span><span class="o">.</span><span class="n">year</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'month'</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span><span class="o">.</span><span class="n">month</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'day'</span><span class="p">]</span> <span class="o">=</span> <span class="n">date</span><span class="o">.</span><span class="n">day</span>
+
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'product_type'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'reanalysis'</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'area'</span><span class="p">]</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'area'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'grid'</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">float</span><span class="p">,</span><span class="n">attrs</span><span class="p">[</span><span class="s1">'grid'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)))</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'param'</span><span class="p">]</span> <span class="o">=</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'param'</span><span class="p">]</span><span class="o">.</span><span class="n">split</span><span class="p">(</span><span class="s1">'/'</span><span class="p">)</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'time'</span><span class="p">]</span> <span class="o">=</span> <span class="nb">list</span><span class="p">(</span><span class="nb">map</span><span class="p">(</span><span class="nb">str</span><span class="p">,</span><span class="nb">range</span><span class="p">(</span><span class="mi">0</span><span class="p">,</span><span class="mi">24</span><span class="p">,</span><span class="mi">3</span><span class="p">)))</span>
+ <span class="n">newattrs</span><span class="p">[</span><span class="s1">'format'</span><span class="p">]</span> <span class="o">=</span> <span class="s1">'grib'</span>
+
+ <span class="k">return</span> <span class="n">newattrs</span>
<div class="viewcode-block" id="MarsRetrieval.data_retrieve"><a class="viewcode-back" href="../Documentation/Api/api_python.html#MarsRetrieval.MarsRetrieval.data_retrieve">[docs]</a> <span class="k">def</span> <span class="nf">data_retrieve</span><span class="p">(</span><span class="bp">self</span><span class="p">):</span>
<span class="sd">'''Submits a MARS retrieval. Depending on the existence of</span>
@@ -640,7 +709,7 @@
<span class="k">if</span> <span class="ow">not</span> <span class="nb">int</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">public</span><span class="p">):</span>
<span class="k">del</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'target'</span><span class="p">]</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'target: '</span> <span class="o">+</span> <span class="n">target</span><span class="p">)</span>
-
+
<span class="c1"># find all keys without a value and convert all other values to strings</span>
<span class="n">empty_keys</span> <span class="o">=</span> <span class="p">[]</span>
<span class="k">for</span> <span class="n">key</span><span class="p">,</span> <span class="n">value</span> <span class="ow">in</span> <span class="n">attrs</span><span class="o">.</span><span class="n">items</span><span class="p">():</span>
@@ -659,8 +728,15 @@
<span class="k">if</span> <span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="p">:</span>
<span class="k">try</span><span class="p">:</span>
<span class="k">if</span> <span class="n">cds_api</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="p">,</span> <span class="n">cdsapi</span><span class="o">.</span><span class="n">Client</span><span class="p">):</span>
+ <span class="c1"># distinguish between model (ECMWF MARS access) </span>
+ <span class="c1"># and surface level (CS3 online access)</span>
+ <span class="k">if</span> <span class="n">attrs</span><span class="p">[</span><span class="s1">'levtype'</span><span class="p">]</span><span class="o">.</span><span class="n">lower</span><span class="p">()</span> <span class="o">==</span> <span class="s1">'ml'</span><span class="p">:</span>
+ <span class="n">dataset</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET_ML</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="n">dataset</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET_SFC</span>
+ <span class="n">attrs</span> <span class="o">=</span> <span class="bp">self</span><span class="o">.</span><span class="n">_convert_to_cdsera5_sfc_request</span><span class="p">(</span><span class="n">attrs</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'RETRIEVE ERA5 WITH CDS API!'</span><span class="p">)</span>
- <span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="o">.</span><span class="n">retrieve</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">CDS_DATASET</span><span class="p">,</span>
+ <span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="o">.</span><span class="n">retrieve</span><span class="p">(</span><span class="n">dataset</span><span class="p">,</span>
<span class="n">attrs</span><span class="p">,</span> <span class="n">target</span><span class="p">)</span>
<span class="k">elif</span> <span class="n">ec_api</span> <span class="ow">and</span> <span class="nb">isinstance</span><span class="p">(</span><span class="bp">self</span><span class="o">.</span><span class="n">server</span><span class="p">,</span> <span class="n">ecmwfapi</span><span class="o">.</span><span class="n">ECMWFDataServer</span><span class="p">):</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'RETRIEVE PUBLIC DATA (NOT ERA5)!'</span><span class="p">)</span>
diff --git a/Documentation/html/_modules/UioFiles.html b/Documentation/html/_modules/UioFiles.html
index 9b059c21b8205c97e0119a4da252413340d5345c..294f1936bc271e7c571a72273da67550040e21a3 100644
--- a/Documentation/html/_modules/UioFiles.html
+++ b/Documentation/html/_modules/UioFiles.html
@@ -184,7 +184,7 @@
<span class="c1"># - added delete method</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
diff --git a/Documentation/html/_modules/checks.html b/Documentation/html/_modules/checks.html
index d592b9a9ab6aa5e9f831419a9cd6d1dd384903c0..a83ece31093c26e9a7ff8c5a6d0f1f4f6114a11d 100644
--- a/Documentation/html/_modules/checks.html
+++ b/Documentation/html/_modules/checks.html
@@ -170,7 +170,7 @@
<span class="c1"># @Change History:</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -812,7 +812,7 @@
<span class="n">silent_remove</span><span class="p">(</span><span class="n">marsfile</span><span class="p">)</span>
<span class="k">return</span></div>
-<div class="viewcode-block" id="check_public"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_public">[docs]</a><span class="k">def</span> <span class="nf">check_public</span><span class="p">(</span><span class="n">public</span><span class="p">,</span> <span class="n">dataset</span><span class="p">):</span>
+<div class="viewcode-block" id="check_public"><a class="viewcode-back" href="../Documentation/Api/api_python.html#checks.check_public">[docs]</a><span class="k">def</span> <span class="nf">check_public</span><span class="p">(</span><span class="n">public</span><span class="p">,</span> <span class="n">dataset</span><span class="p">,</span> <span class="n">marsclass</span><span class="p">):</span>
<span class="sd">'''Check wether the dataset parameter is set to a</span>
<span class="sd"> public data set.</span>
@@ -828,7 +828,7 @@
<span class="sd"> ------</span>
<span class="sd"> '''</span>
- <span class="k">if</span> <span class="n">public</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">dataset</span><span class="p">:</span>
+ <span class="k">if</span> <span class="n">public</span> <span class="ow">and</span> <span class="ow">not</span> <span class="n">dataset</span> <span class="ow">and</span> <span class="ow">not</span> <span class="p">(</span><span class="n">marsclass</span><span class="o">.</span><span class="n">upper</span><span class="p">()</span> <span class="o">==</span> <span class="s1">'EA'</span><span class="p">):</span>
<span class="k">raise</span> <span class="ne">ValueError</span><span class="p">(</span><span class="s1">'ERROR: If public MARS data are to be retrieved, '</span>
<span class="s1">'the "dataset"-parameter has to be set, too!'</span><span class="p">)</span>
<span class="k">return</span></div>
diff --git a/Documentation/html/_modules/disaggregation.html b/Documentation/html/_modules/disaggregation.html
index 9cbef22aa11fff7273561b16b987461eb51a6850..344c900914d731882fcbd5eb96c051efdccc69af 100644
--- a/Documentation/html/_modules/disaggregation.html
+++ b/Documentation/html/_modules/disaggregation.html
@@ -180,8 +180,11 @@
<span class="c1"># to a new module named disaggregation</span>
<span class="c1"># - added the new disaggregation method for precipitation</span>
<span class="c1">#</span>
+<span class="c1"># June 2020 - Anne Philipp (University of Vienna):</span>
+<span class="c1"># - reformulated formular for dapoly</span>
+<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -253,12 +256,11 @@
<span class="sd"> Migration from Fortran to Python</span>
<span class="sd"> """</span>
-
- <span class="n">pya</span> <span class="o">=</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> <span class="mf">3.</span> <span class="o">*</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]))</span> <span class="o">/</span> <span class="mf">6.</span>
- <span class="n">pyb</span> <span class="o">=</span> <span class="p">(</span><span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">+</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">])</span> <span class="o">/</span> <span class="mf">2.</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="mf">9.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">2.</span>
- <span class="n">pyc</span> <span class="o">=</span> <span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">-</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="mf">7.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">2.</span> <span class="o">-</span> <span class="mf">2.</span> <span class="o">*</span> <span class="n">pyb</span>
- <span class="n">pyd</span> <span class="o">=</span> <span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">-</span> <span class="n">pya</span> <span class="o">/</span> <span class="mf">4.</span> <span class="o">-</span> <span class="n">pyb</span> <span class="o">/</span> <span class="mf">3.</span> <span class="o">-</span> <span class="n">pyc</span> <span class="o">/</span> <span class="mf">2.</span>
- <span class="n">nfield</span> <span class="o">=</span> <span class="mf">8.</span> <span class="o">*</span> <span class="n">pya</span> <span class="o">+</span> <span class="mf">4.</span> <span class="o">*</span> <span class="n">pyb</span> <span class="o">+</span> <span class="mf">2.</span> <span class="o">*</span> <span class="n">pyc</span> <span class="o">+</span> <span class="n">pyd</span>
+
+ <span class="n">nfield</span> <span class="o">=</span> <span class="o">-</span><span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">0</span><span class="p">]</span> <span class="o">+</span> \
+ <span class="mf">7.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">1</span><span class="p">]</span> <span class="o">+</span> \
+ <span class="mf">7.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">2</span><span class="p">]</span> <span class="o">-</span> \
+ <span class="mf">1.</span><span class="o">/</span><span class="mf">12.</span><span class="o">*</span><span class="n">alist</span><span class="p">[</span><span class="mi">3</span><span class="p">]</span>
<span class="k">return</span> <span class="n">nfield</span></div>
diff --git a/Documentation/html/_modules/get_mars_data.html b/Documentation/html/_modules/get_mars_data.html
index c33539161c59598bdc1a8401c4b4c1bb44252b9b..be16f98d96eb8e7028a3099da8e3509f6976aa13 100644
--- a/Documentation/html/_modules/get_mars_data.html
+++ b/Documentation/html/_modules/get_mars_data.html
@@ -187,7 +187,7 @@
<span class="c1"># write_reqheader, mk_server, mk_dates, remove_old, do_retrievment</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
diff --git a/Documentation/html/_modules/install.html b/Documentation/html/_modules/install.html
index bfe349c10cb6c39098afdfb47293662a731ec803..2c18a49a2efd7d92160580fa102f095fbb0d50f2 100644
--- a/Documentation/html/_modules/install.html
+++ b/Documentation/html/_modules/install.html
@@ -174,13 +174,18 @@
<span class="c1"># - added documentation</span>
<span class="c1"># - moved install_args_and_control in here</span>
<span class="c1"># - splitted code in smaller functions</span>
-<span class="c1"># - delete convert build files in here instead of compile job script</span>
+<span class="c1"># - delete fortran build files in here instead of compile job script</span>
<span class="c1"># - changed static path names to variables from config file</span>
<span class="c1"># - splitted install function into several smaller pieces</span>
<span class="c1"># - use of tarfile package in python</span>
+<span class="c1"># June 2020 - Anne Philipp</span>
+<span class="c1"># - renamed "convert" functions to "fortran" functions</span>
+<span class="c1"># - reconfigured mk_tarball to select *.template files instead </span>
+<span class="c1"># of *.nl and *.temp</span>
+<span class="c1"># - added check for makefile settings</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -200,8 +205,8 @@
<span class="c1"># mk_env_vars</span>
<span class="c1"># mk_compilejob</span>
<span class="c1"># mk_job_template</span>
-<span class="c1"># del_convert_build</span>
-<span class="c1"># mk_convert_build</span>
+<span class="c1"># del_fortran_build</span>
+<span class="c1"># mk_fortran_build</span>
<span class="c1">#</span>
<span class="c1">#*******************************************************************************</span>
<span class="sd">'''This script installs the flex_extract program.</span>
@@ -404,13 +409,13 @@
<span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span><span class="p">,</span>
<span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">))</span>
- <span class="c1"># Create Fortran executable - CONVERT2</span>
+ <span class="c1"># Create Fortran executable</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Install '</span> <span class="o">+</span> <span class="n">_config</span><span class="o">.</span><span class="n">FLEXEXTRACT_DIRNAME</span> <span class="o">+</span> <span class="s1">' software at '</span> <span class="o">+</span>
<span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">+</span> <span class="s1">' in directory '</span> <span class="o">+</span>
<span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">abspath</span><span class="p">(</span><span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">)</span> <span class="o">+</span> <span class="s1">'</span><span class="se">\n</span><span class="s1">'</span><span class="p">)</span>
- <span class="n">del_convert_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">)</span>
- <span class="n">mk_convert_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
+ <span class="n">del_fortran_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">)</span>
+ <span class="n">mk_fortran_build</span><span class="p">(</span><span class="s1">'.'</span><span class="p">,</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">)</span>
<span class="n">os</span><span class="o">.</span><span class="n">chdir</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span><span class="p">)</span>
<span class="k">if</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">isfile</span><span class="p">(</span><span class="n">tar_file</span><span class="p">):</span>
@@ -465,6 +470,21 @@
<span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">installdir</span><span class="p">:</span>
<span class="n">c</span><span class="o">.</span><span class="n">installdir</span> <span class="o">=</span> <span class="n">_config</span><span class="o">.</span><span class="n">PATH_FLEXEXTRACT_DIR</span>
+ <span class="k">if</span> <span class="ow">not</span> <span class="n">c</span><span class="o">.</span><span class="n">makefile</span><span class="p">:</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: no makefile was specified.'</span><span class="p">)</span>
+ <span class="k">if</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">'local'</span><span class="p">:</span>
+ <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">'makefile_local_gfortran'</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: default makefile selected: makefile_local_gfortan'</span><span class="p">)</span>
+ <span class="k">elif</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">'ecgate'</span><span class="p">:</span>
+ <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">'makefile_ecgate'</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: default makefile selected: makefile_ecgate'</span><span class="p">)</span>
+ <span class="k">elif</span> <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">'cca'</span> <span class="ow">or</span> \
+ <span class="n">c</span><span class="o">.</span><span class="n">install_target</span> <span class="o">==</span> <span class="s1">'ccb'</span><span class="p">:</span>
+ <span class="n">c</span><span class="o">.</span><span class="n">makefile</span> <span class="o">=</span> <span class="s1">'makefile_cray'</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'WARNING: default makefile selected: makefile_cray'</span><span class="p">)</span>
+ <span class="k">else</span><span class="p">:</span>
+ <span class="k">pass</span>
+
<span class="k">return</span></div>
@@ -517,11 +537,9 @@
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_CONTROLFILES</span><span class="p">,</span>
<span class="s1">'CONTROL*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">testfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="p">,</span> <span class="s1">'*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEST</span><span class="o">+</span><span class="s2">"/Installation"</span><span class="p">,</span> <span class="s1">'*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">tempfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*.temp'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
- <span class="n">nlfiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
- <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*.nl'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*.template'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">gribtable</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_TEMPLATES</span><span class="p">,</span> <span class="s1">'*grib*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">ffiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
@@ -530,10 +548,11 @@
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'*.h'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="n">makefiles</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
<span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_FORTRAN_SRC</span><span class="p">,</span> <span class="s1">'makefile*'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
- <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">]</span>
+ <span class="n">jobdir</span> <span class="o">=</span> <span class="p">[</span><span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">relpath</span><span class="p">(</span><span class="n">x</span><span class="p">,</span> <span class="n">ecd</span><span class="p">)</span>
+ <span class="k">for</span> <span class="n">x</span> <span class="ow">in</span> <span class="n">UioFiles</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_REL_JOBSCRIPTS</span><span class="p">,</span> <span class="s1">'*.md'</span><span class="p">)</span><span class="o">.</span><span class="n">files</span><span class="p">]</span>
<span class="c1"># concatenate single lists to one for a better looping</span>
- <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> <span class="n">nlfiles</span> <span class="o">+</span> \
+ <span class="n">filelist</span> <span class="o">=</span> <span class="n">pyfiles</span> <span class="o">+</span> <span class="n">pytestfiles</span> <span class="o">+</span> <span class="n">controlfiles</span> <span class="o">+</span> <span class="n">tempfiles</span> <span class="o">+</span> \
<span class="n">ffiles</span> <span class="o">+</span> <span class="n">gribtable</span> <span class="o">+</span> <span class="n">hfiles</span> <span class="o">+</span> <span class="n">makefiles</span> <span class="o">+</span> <span class="n">ecmwf_env_file</span> <span class="o">+</span> \
<span class="n">runfile</span> <span class="o">+</span> <span class="n">jobdir</span> <span class="o">+</span> <span class="n">testfiles</span> <span class="o">+</span>\
<span class="p">[</span><span class="s1">'CODE_OF_CONDUCT.md'</span><span class="p">,</span> <span class="s1">'LICENSE.md'</span><span class="p">,</span> <span class="s1">'README.md'</span><span class="p">]</span>
@@ -794,9 +813,9 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="del_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.del_convert_build">[docs]</a><span class="k">def</span> <span class="nf">del_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
+<div class="viewcode-block" id="del_fortran_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.del_fortran_build">[docs]</a><span class="k">def</span> <span class="nf">del_fortran_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">):</span>
<span class="sd">'''Clean up the Fortran source directory and remove all</span>
-<span class="sd"> build files (e.g. \*.o, \*.mod and CONVERT2)</span>
+<span class="sd"> build files (e.g. \*.o, \*.mod and FORTRAN EXECUTABLE)</span>
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
@@ -818,7 +837,7 @@
<span class="k">return</span></div>
-<div class="viewcode-block" id="mk_convert_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_convert_build">[docs]</a><span class="k">def</span> <span class="nf">mk_convert_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
+<div class="viewcode-block" id="mk_fortran_build"><a class="viewcode-back" href="../Documentation/Api/api_python.html#install.mk_fortran_build">[docs]</a><span class="k">def</span> <span class="nf">mk_fortran_build</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="n">makefile</span><span class="p">):</span>
<span class="sd">'''Compiles the Fortran code and generates the executable.</span>
<span class="sd"> Parameters</span>
@@ -848,13 +867,13 @@
<span class="nb">print</span><span class="p">(</span><span class="n">perr</span><span class="o">.</span><span class="n">decode</span><span class="p">())</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Please edit '</span> <span class="o">+</span> <span class="n">makefile</span> <span class="o">+</span>
<span class="s1">' or try another makefile in the src directory.'</span><span class="p">)</span>
- <span class="nb">print</span><span class="p">(</span><span class="s1">'Most likely GRIB_API_INCLUDE_DIR, GRIB_API_LIB '</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'Most likely ECCODES_INCLUDE_DIR, ECCODES_LIB '</span>
<span class="s1">'and EMOSLIB must be adapted.'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="s1">'Available makefiles:'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="n">UioFiles</span><span class="p">(</span><span class="n">src_path</span><span class="p">,</span> <span class="s1">'makefile*'</span><span class="p">))</span>
<span class="n">sys</span><span class="o">.</span><span class="n">exit</span><span class="p">(</span><span class="s1">'Compilation failed!'</span><span class="p">)</span>
<span class="k">except</span> <span class="ne">ValueError</span> <span class="k">as</span> <span class="n">e</span><span class="p">:</span>
- <span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: make of Fortran code failed:'</span><span class="p">)</span>
+ <span class="nb">print</span><span class="p">(</span><span class="s1">'ERROR: makefile call failed:'</span><span class="p">)</span>
<span class="nb">print</span><span class="p">(</span><span class="n">e</span><span class="p">)</span>
<span class="k">else</span><span class="p">:</span>
<span class="n">execute_subprocess</span><span class="p">([</span><span class="s1">'ls'</span><span class="p">,</span> <span class="s1">'-l'</span><span class="p">,</span>
diff --git a/Documentation/html/_modules/prepare_flexpart.html b/Documentation/html/_modules/prepare_flexpart.html
index f032ab554dbade028bdc21d99ed152e25f3c809c..16c6d363f15750fa44682f4b27924b415606dfed 100644
--- a/Documentation/html/_modules/prepare_flexpart.html
+++ b/Documentation/html/_modules/prepare_flexpart.html
@@ -190,7 +190,7 @@
<span class="c1"># arguments and prepare_flexpart into it</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
diff --git a/Documentation/html/_modules/submit.html b/Documentation/html/_modules/submit.html
index 1db3ca87ed0032582422f5b1d952f47ccfdf6262..324208d8dfd77cfe279ee46d00bc4965bb02dd34 100644
--- a/Documentation/html/_modules/submit.html
+++ b/Documentation/html/_modules/submit.html
@@ -182,9 +182,12 @@
<span class="c1"># additionally, as option without submitting the mars jobs</span>
<span class="c1"># - splitted submit function to use genshi templates for the</span>
<span class="c1"># job script and avoid code duplication</span>
+<span class="c1"># June 2020 - Anne Philipp</span>
+<span class="c1"># - changed finale job_file to filename from config file</span>
+<span class="c1"># instead of generating from the template filename</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
@@ -233,8 +236,6 @@
<span class="n">submit_job_to_ecserver</span><span class="p">)</span>
<span class="kn">from</span> <span class="nn">Mods.get_mars_data</span> <span class="kn">import</span> <span class="n">get_mars_data</span>
<span class="kn">from</span> <span class="nn">Mods.prepare_flexpart</span> <span class="kn">import</span> <span class="n">prepare_flexpart</span>
-<span class="c1">#from Classes.ControlFile import ControlFile</span>
-
<span class="c1"># ------------------------------------------------------------------------------</span>
<span class="c1"># METHODS</span>
@@ -290,7 +291,7 @@
<span class="sd"> submission to ECMWF. It contains all necessary</span>
<span class="sd"> module and variable settings for the ECMWF environment as well as</span>
<span class="sd"> the job call and mail report instructions.</span>
-<span class="sd"> Default is "job.temp".</span>
+<span class="sd"> Default is _config.TEMPFILE_JOB.</span>
<span class="sd"> c : ControlFile</span>
<span class="sd"> Contains all the parameters of CONTROL file and</span>
@@ -312,7 +313,7 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'---- On-demand mode! ----'</span><span class="p">)</span>
<span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
- <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'.ksh'</span><span class="p">)</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FILE_JOB_OD</span><span class="p">)</span>
<span class="c1"># divide time periode into specified number of job chunks</span>
<span class="c1"># to have multiple job scripts</span>
@@ -350,7 +351,7 @@
<span class="nb">print</span><span class="p">(</span><span class="s1">'---- Operational mode! ----'</span><span class="p">)</span>
<span class="n">job_file</span> <span class="o">=</span> <span class="n">os</span><span class="o">.</span><span class="n">path</span><span class="o">.</span><span class="n">join</span><span class="p">(</span><span class="n">_config</span><span class="o">.</span><span class="n">PATH_JOBSCRIPTS</span><span class="p">,</span>
- <span class="n">jtemplate</span><span class="p">[:</span><span class="o">-</span><span class="mi">5</span><span class="p">]</span> <span class="o">+</span> <span class="s1">'oper.ksh'</span><span class="p">)</span>
+ <span class="n">_config</span><span class="o">.</span><span class="n">FILE_JOB_OP</span><span class="p">)</span>
<span class="n">c</span><span class="o">.</span><span class="n">start_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span>
<span class="n">c</span><span class="o">.</span><span class="n">end_date</span> <span class="o">=</span> <span class="s1">'$</span><span class="si">{MSJ_YEAR}</span><span class="s1">$</span><span class="si">{MSJ_MONTH}</span><span class="s1">$</span><span class="si">{MSJ_DAY}</span><span class="s1">'</span>
@@ -375,11 +376,11 @@
<span class="sd"> Parameters</span>
<span class="sd"> ----------</span>
<span class="sd"> jtemplate : str</span>
-<span class="sd"> Job template file from sub-directory "_templates" for</span>
+<span class="sd"> Job template file from sub-directory "Templates" for</span>
<span class="sd"> submission to ECMWF. It contains all necessary</span>
<span class="sd"> module and variable settings for the ECMWF environment as well as</span>
<span class="sd"> the job call and mail report instructions.</span>
-<span class="sd"> Default is "job.temp".</span>
+<span class="sd"> Default is _config.TEMPFILE_JOB.</span>
<span class="sd"> job_file : str</span>
<span class="sd"> Path to the job script file.</span>
diff --git a/Documentation/html/_modules/tools.html b/Documentation/html/_modules/tools.html
index 4d028f07e072d287f41ef66aa3dbd1c422aeb77a..2bdf28aeb91309dc578c18a61e0b781820e87a03 100644
--- a/Documentation/html/_modules/tools.html
+++ b/Documentation/html/_modules/tools.html
@@ -185,7 +185,7 @@
<span class="c1"># get_dimensions, execute_subprocess, none_or_int, none_or_str</span>
<span class="c1">#</span>
<span class="c1"># @License:</span>
-<span class="c1"># (C) Copyright 2014-2019.</span>
+<span class="c1"># (C) Copyright 2014-2020.</span>
<span class="c1"># Anne Philipp, Leopold Haimberger</span>
<span class="c1">#</span>
<span class="c1"># SPDX-License-Identifier: CC-BY-4.0</span>
diff --git a/Documentation/html/_sources/Documentation/Input/examples.rst.txt b/Documentation/html/_sources/Documentation/Input/examples.rst.txt
index 8ed3c767048545c50d6be66b536a1476282ecfa8..6dc5afa0687e68a3177ab7e48769946f1c8be829 100644
--- a/Documentation/html/_sources/Documentation/Input/examples.rst.txt
+++ b/Documentation/html/_sources/Documentation/Input/examples.rst.txt
@@ -11,29 +11,29 @@ CONTROL.documentation
.. code-block:: bash
- CONTROL_CERA
- CONTROL_CERA.global
- CONTROL_CERA.public
- CONTROL_EA5
- CONTROL_EA5.global
- CONTROL_EA5.public
- CONTROL_EI
- CONTROL_EI.global
- CONTROL_EI.public
- CONTROL_OD.ELDA.FC.eta.ens.double
- CONTROL_OD.ENFO.CF
- CONTROL_OD.ENFO.CV
- CONTROL_OD.ENFO.PF
- CONTROL_OD.ENFO.PF.36hours
- CONTROL_OD.ENFO.PF.ens
- CONTROL_OD.OPER.4V.operational
- CONTROL_OD.OPER.FC.36hours
- CONTROL_OD.OPER.FC.eta.global
- CONTROL_OD.OPER.FC.eta.highres
- CONTROL_OD.OPER.FC.gauss.highres
- CONTROL_OD.OPER.FC.operational
- CONTROL_OD.OPER.FC.twicedaily.1hourly
- CONTROL_OD.OPER.FC.twicedaily.3hourly
+ CONTROL_CERA
+ CONTROL_CERA.global
+ CONTROL_CERA.public
+ CONTROL_EA5
+ CONTROL_EA5.global
+ CONTROL_EA5.public
+ CONTROL_EI
+ CONTROL_EI.global
+ CONTROL_EI.public
+ CONTROL_OD.ELDA.FC.eta.ens.double
+ CONTROL_OD.ENFO.CF
+ CONTROL_OD.ENFO.CV
+ CONTROL_OD.ENFO.PF
+ CONTROL_OD.ENFO.PF.36hours
+ CONTROL_OD.ENFO.PF.ens
+ CONTROL_OD.OPER.4V.operational
+ CONTROL_OD.OPER.FC.36hours
+ CONTROL_OD.OPER.FC.eta.global
+ CONTROL_OD.OPER.FC.eta.highres
+ CONTROL_OD.OPER.FC.gauss.highres
+ CONTROL_OD.OPER.FC.operational
+ CONTROL_OD.OPER.FC.twicedaily.1hourly
+ CONTROL_OD.OPER.FC.twicedaily.3hourly
.. note::
diff --git a/Documentation/html/_sources/Documentation/Input/templates.rst.txt b/Documentation/html/_sources/Documentation/Input/templates.rst.txt
index 4a26a545f83fe834b14e2298fedd2f5c705c636e..5d96945f3ff1548ed35725058340a7e4c843bf05 100644
--- a/Documentation/html/_sources/Documentation/Input/templates.rst.txt
+++ b/Documentation/html/_sources/Documentation/Input/templates.rst.txt
@@ -181,20 +181,20 @@ submitscript.template
export VERSION=7.1
case $${HOST} in
*ecg*)
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
- export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
- ;;
- *cca*)
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
- export SCRATCH=${TMPDIR}
- export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
+ ;;
+ *cca*)
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ export SCRATCH=${TMPDIR}
+ export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
;;
esac
@@ -266,18 +266,18 @@ jobscript.template
export VERSION=$version_number
case $$$${HOST} in
*ecg*)
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
export PATH=$$$${PATH}:$fp_root_path
;;
*cca*)
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
export SCRATCH=$$$${TMPDIR}
export PATH=$$$${PATH}:$fp_root_path
;;
diff --git a/Documentation/html/_sources/Installation/gateway.rst.txt b/Documentation/html/_sources/Installation/gateway.rst.txt
index 06f50a949babcea30cdd67ff8318ac4003f64b7e..6f3c8db17ebff2280dc5be261e03efaa0b460cec 100644
--- a/Documentation/html/_sources/Installation/gateway.rst.txt
+++ b/Documentation/html/_sources/Installation/gateway.rst.txt
@@ -156,14 +156,13 @@ to start the installation. You should see the following on standard output.
.. code-block:: bash
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. 1 <username> at 20 Mar 8 14:11 calc_etadot -> calc_etadot_fast.out
SUCCESS!
-
diff --git a/Documentation/html/_sources/Installation/local.rst.txt b/Documentation/html/_sources/Installation/local.rst.txt
index 9f9c012b9299f66d5ce9b7c9315f4c5481c569ce..97a23a84f0f9fa794bda86fdf7a006b26ed41b73 100644
--- a/Documentation/html/_sources/Installation/local.rst.txt
+++ b/Documentation/html/_sources/Installation/local.rst.txt
@@ -310,19 +310,19 @@ to start the installation. You should see the following standard output.
.. code-block:: bash
# Output of setup.sh
- WARNING: installdir has not been specified
- flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
- Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
-
- Using makefile: makefile_local_gfortran
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
- gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
- ln -sf calc_etadot_fast.out calc_etadot
-
- lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
+ WARNING: installdir has not been specified
+ flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
+ Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
+
+ Using makefile: makefile_local_gfortran
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
+ ln -sf calc_etadot_fast.out calc_etadot
+
+ lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
diff --git a/Documentation/html/_sources/Installation/remote.rst.txt b/Documentation/html/_sources/Installation/remote.rst.txt
index 127e2b76b8a9142827ef35ac710a7024957425ad..be2c40b3d83c0e1f8bbbe60ac61019c91ab5726e 100644
--- a/Documentation/html/_sources/Installation/remote.rst.txt
+++ b/Documentation/html/_sources/Installation/remote.rst.txt
@@ -170,12 +170,12 @@ to start the installation. You should see the following on standard output.
.. code-block:: bash
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. 1 <username> at 20 Mar 8 14:11 calc_etadot -> calc_etadot_fast.out
diff --git a/Documentation/html/_sources/Support/known_bugs_issues.rst.txt b/Documentation/html/_sources/Support/known_bugs_issues.rst.txt
index 7e2ba0ba0efa792b3420c94a8f2705ac01465d99..36ffa9318499d43d23b949efe410e514c19a1f50 100644
--- a/Documentation/html/_sources/Support/known_bugs_issues.rst.txt
+++ b/Documentation/html/_sources/Support/known_bugs_issues.rst.txt
@@ -30,12 +30,12 @@ If you get an error message from ECCODES with code 250, looking like this:
.. code-block:: bash
- ECCODES ERROR : wrong size (184) for pv it contains 276 values
- ECCODES ERROR : get: pv Passed array is too small
- ... ERROR CODE: 250
- ... ERROR MESSAGE:
- Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
- ... FORTRAN PROGRAM FAILED!
+ ECCODES ERROR : wrong size (184) for pv it contains 276 values
+ ECCODES ERROR : get: pv Passed array is too small
+ ... ERROR CODE: 250
+ ... ERROR MESSAGE:
+ Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
+ ... FORTRAN PROGRAM FAILED!
then you have set a wrong maximum level in the :literal:`CONTROL` file!
It is important to properly select the maximum level depending on the data set you would like to retrieve. Only the following values of the number of model levels available are valid: 16, 19, 31, 40, 50, 60, 62, 91, 137.
@@ -47,4 +47,4 @@ The operational data sets use different numbers, depending on the date. For exam
.. note::
- Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
+ Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
diff --git a/Documentation/html/_sources/quick_start.rst.txt b/Documentation/html/_sources/quick_start.rst.txt
index 381644220d5b9771b1e5ca93e463283a5816a7e0..903e0b20a75bd127dceab33f7f5998c08c5c09c4 100644
--- a/Documentation/html/_sources/quick_start.rst.txt
+++ b/Documentation/html/_sources/quick_start.rst.txt
@@ -427,7 +427,7 @@ Field type and time
Vertical velocity
The vertical velocity for ``FLEXPART`` is not directly available from MARS and has to be calculated.
- There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
+ There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
Usually, one has to decide between ``GAUSS 1`` and ``ETA 1``. ``GAUSS 1`` means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. ``ETA 1`` means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use ``ETA 1`` where possible, as there is a substantial computational overhead for solving the continuity equation.
.. code-block:: bash
@@ -444,8 +444,8 @@ Vertical velocity
Grid resolution and domain
The grid and domain parameters depends on each other. ``grid`` refers to the grid resolution. It can be given as decimal values (e.g., ``1.`` meaning 1.0°), or as in previous versions of flex_extract, as integer values refering to 1/1000 degrees (e.g., ``1000`` means also 1°). The code applies common sense to determine what format is to be assumed.
After selecting grid, the ``domain`` has to be defined. The extension in longitude or latitude direction must be an integer multiple of ``grid``.
-
-
+
+
The horizontal resolution for spectral fields is set by the parameter ``RESOL``. For information about how to select an appropriate value please read the explanation of the MARS keyword RESOL as found `in this entry of the ECMWF on-line documentation <https://confluence.ecmwf.int/display/UDOC/Post-processing+keywords#Post-processingkeywords-resol>`_ and `this table (also ECMWF documentation) <https://confluence.ecmwf.int/display/UDOC/Retrieve#Retrieve-Truncationbeforeinterpolation>`_.
.. code-block:: bash
@@ -462,7 +462,7 @@ Grid resolution and domain
Flux data
Flux fields are always forecast fields and contain values of the fluxes accumulated since the start of the respective forecast. As certain re-analysis dataset cover all time steps with analysis fields, it was necessary to define a new parameter set for the definition of the flux fields. The following parameters are used specifically for flux fields. ``ACCTYPE`` is the field type (must be a type of forecast), ``ACCTIME`` the forecast starting time, and ``ACCMAXSTEP`` the maximum forecast step;``DTIME`` the temporal resolution. ACCTYPE is assumed to be the same during the whole period given by ACCTIME and ACCMAXSTEP. These values will be set automatically if not provided in a ``CONTROL`` file.
-
+
.. code-block:: bash
:caption: Example setting for the definition of flux fields.
diff --git a/Documentation/html/fontconfig/12b26b760a24f8b4feb03ad48a333a72-le64.cache-3 b/Documentation/html/fontconfig/12b26b760a24f8b4feb03ad48a333a72-le64.cache-3
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deleted file mode 100644
index b564ee1318de5402ba2b674293545ed5380fff81..0000000000000000000000000000000000000000
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diff --git a/Documentation/html/genindex.html b/Documentation/html/genindex.html
index 2bea1d441d6e30dc3c8b273b465485ba1c05b34d..a6913b97eabf38674fb88c261a4fa2fda95a33a4 100644
--- a/Documentation/html/genindex.html
+++ b/Documentation/html/genindex.html
@@ -359,7 +359,7 @@
<td style="width: 33%; vertical-align: top;"><ul>
<li><a href="Documentation/Api/api_python.html#ControlFile.ControlFile.debug">debug (ControlFile.ControlFile attribute)</a>
</li>
- <li><a href="Documentation/Api/api_python.html#install.del_convert_build">del_convert_build() (in module install)</a>
+ <li><a href="Documentation/Api/api_python.html#install.del_fortran_build">del_fortran_build() (in module install)</a>
</li>
<li><a href="Documentation/Api/api_python.html#UioFiles.UioFiles.delete_files">delete_files() (UioFiles.UioFiles method)</a>
</li>
@@ -598,12 +598,12 @@
<li><a href="Documentation/Api/api_python.html#ControlFile.ControlFile.maxstep">maxstep (ControlFile.ControlFile attribute)</a>
</li>
<li><a href="Documentation/Api/api_python.html#install.mk_compilejob">mk_compilejob() (in module install)</a>
-</li>
- <li><a href="Documentation/Api/api_python.html#install.mk_convert_build">mk_convert_build() (in module install)</a>
</li>
<li><a href="Documentation/Api/api_python.html#get_mars_data.mk_dates">mk_dates() (in module get_mars_data)</a>
</li>
<li><a href="Documentation/Api/api_python.html#install.mk_env_vars">mk_env_vars() (in module install)</a>
+</li>
+ <li><a href="Documentation/Api/api_python.html#install.mk_fortran_build">mk_fortran_build() (in module install)</a>
</li>
<li><a href="Documentation/Api/api_python.html#install.mk_job_template">mk_job_template() (in module install)</a>
</li>
diff --git a/Documentation/html/objects.inv b/Documentation/html/objects.inv
index b03f28865e5d03c538c593f1e7abfda3267c9e31..80c1a3f56a4d658d479e7aa3791ed555561e97e3 100644
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diff --git a/Documentation/html/quick_start.html b/Documentation/html/quick_start.html
index 651f61aef2695b87c00bc2f946dea8b67d7f5452..cba86a78203380a233942c5fcfd3d37bf9c0d1e6 100644
--- a/Documentation/html/quick_start.html
+++ b/Documentation/html/quick_start.html
@@ -550,7 +550,7 @@ The forecast field types (e.g. FC, CF, CV, PF) need to declare a combination of
</div>
</dd>
<dt>Vertical velocity</dt><dd><p>The vertical velocity for <code class="docutils literal notranslate"><span class="pre">FLEXPART</span></code> is not directly available from MARS and has to be calculated.
-There are several options for this, and the following parameters are responsible for the selection. See <a class="reference internal" href="Documentation/vertco.html"><span class="doc">Vertical wind</span></a> for a detailed explanation. Using <code class="docutils literal notranslate"><span class="pre">ETADIFF</span> <span class="pre">1</span></code>, <code class="docutils literal notranslate"><span class="pre">OMEGA</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">OMEGADIFF</span> <span class="pre">1</span></code> is recommended for debugging and testing only.
+There are several options for this, and the following parameters are responsible for the selection. See <a class="reference internal" href="Documentation/vertco.html"><span class="doc">Vertical wind</span></a> for a detailed explanation. Using <code class="docutils literal notranslate"><span class="pre">ETADIFF</span> <span class="pre">1</span></code>, <code class="docutils literal notranslate"><span class="pre">OMEGA</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">OMEGADIFF</span> <span class="pre">1</span></code> is recommended for debugging and testing only.
Usually, one has to decide between <code class="docutils literal notranslate"><span class="pre">GAUSS</span> <span class="pre">1</span></code> and <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code>. <code class="docutils literal notranslate"><span class="pre">GAUSS</span> <span class="pre">1</span></code> means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code> means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use <code class="docutils literal notranslate"><span class="pre">ETA</span> <span class="pre">1</span></code> where possible, as there is a substantial computational overhead for solving the continuity equation.</p>
<div class="literal-block-wrapper docutils container" id="id5">
<div class="code-block-caption"><span class="caption-text">Example setting for the vertical coordinate retrieval (recommended if etadot fields are available).</span><a class="headerlink" href="#id5" title="Permalink to this code">¶</a></div>
diff --git a/Documentation/html/searchindex.js b/Documentation/html/searchindex.js
index f73bd59c99edbcfa182032425f1b2c5667585fd7..df4bbb07c562129ec8317a5479602d566fdba999 100644
--- a/Documentation/html/searchindex.js
+++ b/Documentation/html/searchindex.js
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the documentation","Auto-generated documentation for the Fortran programme","Auto-generated documentation for the Python scripts","CONTROL file changes","The compilation job script <code class=\"docutils literal notranslate\"><span class=\"pre\">compilejob.ksh</span></code>","The CONTROL file","The CONTROL parameters","ECMWF user credential file <code class=\"docutils literal notranslate\"><span class=\"pre\">ECMWF_ENV</span></code>","CONTROL file examples","The Fortran makefile for <code class=\"docutils literal notranslate\"><span class=\"pre\">calc_etadot</span></code>","The job script <code class=\"docutils literal notranslate\"><span class=\"pre\">job.ksh</span></code>","The executable script - <code class=\"docutils literal notranslate\"><span class=\"pre\">run.sh</span></code>","The installation script - <code class=\"docutils literal notranslate\"><span class=\"pre\">setup.sh</span></code>","Templates","Application modes","Program flow","Auto-generated documentation","Disaggregation of flux data","Control & input data","Output data","Overview","Vertical wind","Access modes","Link collection","Hints for data set selection","Available data sets for member-state users","Available data sets for public users","Metrics","Static code analysis","Test cases","Gateway mode installation","Local mode installation","Remote mode installation","FAQ - Frequently asked questions","Known Bugs and Issues","Developer Team","Changelog","Developer Guide","Code-Level Documentation","ECMWF Data","Evaluation","Welcome to the <code class=\"docutils literal notranslate\"><span class=\"pre\">flex_extract</span></code> Documentation!","Installation","Usage","Support","ToDos"],titleterms:{"case":29,"class":2,"long":19,"new":[19,36],"public":[26,42,43],"static":28,CDS:[31,34],The:[4,5,6,9,10,11,12],accept:42,access:22,addit:[0,6,19],adjust:43,agreement:[],analysi:28,api:[31,34],applic:[14,15],ask:33,auto:[1,2,16],avail:[24,25,26],block:0,bug:[34,36,44],calc_etadot:[9,19,34],calc_etadot_nml:13,calcul:21,can:[24,33],cera:43,certain:43,chang:[3,36],changelog:36,check:2,code:[28,34,38],collect:23,combin:[42,43],comparison:29,compil:4,compilejob:4,content:[7,11,12,19],continu:21,control:[3,5,6,8,18,43],controlfil:2,convert:[],coordin:[],credenti:7,data:[6,17,18,19,24,25,26,34,39,43],dataset:[42,43],definit:43,depend:[30,31,32,42],destin:34,develop:[35,37],diagramm:0,differ:15,disaggreg:[2,17,19],distribut:33,document:[0,1,2,16,38,41],doe:[4,10],domain:6,download:42,eccod:34,ecflexpart:2,ecmwf:[7,31,39,42],ecmwf_env:[7,13],ensembl:19,environ:[30,31,32],equat:21,era5:34,era:43,error:34,evalu:40,exampl:[4,5,8,10,15],execut:11,faq:[33,44],featur:[36,43],field:[6,17,19],file:[3,5,6,7,8,19,21,29,43],find:24,finder:[],fix:36,flex_extract:[41,42],flexpart:[19,42],flow:15,flux:[6,17,19],forecast:19,format:5,fort:19,fortran:[1,9,19,34,42],frequent:33,from:[21,33],full:42,gatewai:[30,34,43],gener:[1,2,6,15,16],get_mars_data:2,grib:[19,29],gributil:2,guid:37,hint:[24,43],horizont:21,how:24,index:19,input:[18,19],instal:[2,12,30,31,32,33,34,42],installscript:13,interim:43,issu:[34,44],job:[4,10,43],jobscript:13,known:[34,44],ksh:[4,10],level:[25,38],librari:33,licenc:42,line:0,link:23,list:44,local:[15,31,43],mail:44,makefil:9,mar:[19,21,29],marsretriev:2,member:[15,25],metric:27,mode:[14,15,22,30,31,32,43],model:25,modul:2,older:17,onlin:[],oper:43,option:[11,12],other:17,out:24,output:[19,21],overview:20,packag:33,paramet:[6,11,12,21,34,43],parti:33,pre:21,precipit:[17,19],predict:19,prepar:[21,30,31,32,43],prepare_flexpart:2,problem:34,program:[2,15,19,34,42],programm:1,proper:43,pure:[],python:2,question:33,quick:[],registr:42,releas:[34,36],remot:[32,43],report:44,request:[19,29],rest:[],retriev:[],run:11,script:[2,4,10,11,12],section:6,select:[24,43],sequenc:0,set:[15,24,25,26],setup:12,softwar:0,some:[],specif:43,specifi:[],sphinx:0,standard:19,start:[],state:25,submiss:11,submit:[2,11],submitscript:13,support:44,surfac:25,system:44,team:35,temp:[],templat:13,temporari:19,test:[29,30,31,42],testcas:[],third:33,ticket:44,time:6,todo:45,tool:2,uiofil:2,updat:0,usag:[11,12,43],user:[6,7,15,25,26],using:21,veloc:21,version:17,vertic:[6,21],web:31,welcom:41,what:[4,10,24,33],wind:[6,21],workflow:15}})
\ No newline at end of file
diff --git a/Documentation/html/todo.html b/Documentation/html/todo.html
index 4a64edee8e209630b4d32425d96ff673d19b0ffa..9450e2ad5c06114a8e84a1458ad9831a3bf68db2 100644
--- a/Documentation/html/todo.html
+++ b/Documentation/html/todo.html
@@ -163,31 +163,6 @@
<div class="section" id="todos">
<h1>ToDos<a class="headerlink" href="#todos" title="Permalink to this headline">¶</a></h1>
-<div class="admonition-todo admonition">
-<p class="admonition-title">Todo</p>
-<p>#PS some information to be added.</p>
-</div>
-<p class="todo-source">(The <a class="reference internal" href="Documentation/Input/examples.html#id1"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/Documentation/Input/examples.rst, line 38.)</p>
-<div class="admonition-todo admonition">
-<p class="admonition-title">Todo</p>
-<p>#PS NEEDS MORE DESCRIPTION</p>
-</div>
-<p class="todo-source">(The <a class="reference internal" href="Documentation/output.html#id1"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/Documentation/output.rst, line 208.)</p>
-<div class="admonition-todo admonition">
-<p class="admonition-title">Todo</p>
-<p>#PS needs to be rephrased</p>
-</div>
-<p class="todo-source">(The <a class="reference internal" href="quick_start.html#id2"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 420.)</p>
-<div class="admonition-todo admonition">
-<p class="admonition-title">Todo</p>
-<p>#PS shouldn’t we explain how to define a domain??</p>
-</div>
-<p class="todo-source">(The <a class="reference internal" href="quick_start.html#id3"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 453.)</p>
-<div class="admonition-todo admonition">
-<p class="admonition-title">Todo</p>
-<p>#PS for which application would this be typical?</p>
-</div>
-<p class="todo-source">(The <a class="reference internal" href="quick_start.html#id4"><em>original entry</em></a> is located in /raid60/nas/tmc/Anne/FLEX_EXTRACT_REPO/flex_extract/For_developers/Sphinx/Source/quick_start.rst, line 474.)</p>
</div>
diff --git a/For_developers/ECMWF_datasummary.pptx b/For_developers/ECMWF_datasummary.pptx
new file mode 100644
index 0000000000000000000000000000000000000000..d965a4a93b2aa7b7ad3a3d9258cae7628d041d4b
Binary files /dev/null and b/For_developers/ECMWF_datasummary.pptx differ
diff --git a/For_developers/Sphinx/Source/Documentation/Input/examples.rst b/For_developers/Sphinx/Source/Documentation/Input/examples.rst
index 8ed3c767048545c50d6be66b536a1476282ecfa8..6dc5afa0687e68a3177ab7e48769946f1c8be829 100644
--- a/For_developers/Sphinx/Source/Documentation/Input/examples.rst
+++ b/For_developers/Sphinx/Source/Documentation/Input/examples.rst
@@ -11,29 +11,29 @@ CONTROL.documentation
.. code-block:: bash
- CONTROL_CERA
- CONTROL_CERA.global
- CONTROL_CERA.public
- CONTROL_EA5
- CONTROL_EA5.global
- CONTROL_EA5.public
- CONTROL_EI
- CONTROL_EI.global
- CONTROL_EI.public
- CONTROL_OD.ELDA.FC.eta.ens.double
- CONTROL_OD.ENFO.CF
- CONTROL_OD.ENFO.CV
- CONTROL_OD.ENFO.PF
- CONTROL_OD.ENFO.PF.36hours
- CONTROL_OD.ENFO.PF.ens
- CONTROL_OD.OPER.4V.operational
- CONTROL_OD.OPER.FC.36hours
- CONTROL_OD.OPER.FC.eta.global
- CONTROL_OD.OPER.FC.eta.highres
- CONTROL_OD.OPER.FC.gauss.highres
- CONTROL_OD.OPER.FC.operational
- CONTROL_OD.OPER.FC.twicedaily.1hourly
- CONTROL_OD.OPER.FC.twicedaily.3hourly
+ CONTROL_CERA
+ CONTROL_CERA.global
+ CONTROL_CERA.public
+ CONTROL_EA5
+ CONTROL_EA5.global
+ CONTROL_EA5.public
+ CONTROL_EI
+ CONTROL_EI.global
+ CONTROL_EI.public
+ CONTROL_OD.ELDA.FC.eta.ens.double
+ CONTROL_OD.ENFO.CF
+ CONTROL_OD.ENFO.CV
+ CONTROL_OD.ENFO.PF
+ CONTROL_OD.ENFO.PF.36hours
+ CONTROL_OD.ENFO.PF.ens
+ CONTROL_OD.OPER.4V.operational
+ CONTROL_OD.OPER.FC.36hours
+ CONTROL_OD.OPER.FC.eta.global
+ CONTROL_OD.OPER.FC.eta.highres
+ CONTROL_OD.OPER.FC.gauss.highres
+ CONTROL_OD.OPER.FC.operational
+ CONTROL_OD.OPER.FC.twicedaily.1hourly
+ CONTROL_OD.OPER.FC.twicedaily.3hourly
.. note::
diff --git a/For_developers/Sphinx/Source/Documentation/Input/templates.rst b/For_developers/Sphinx/Source/Documentation/Input/templates.rst
index 4a26a545f83fe834b14e2298fedd2f5c705c636e..5d96945f3ff1548ed35725058340a7e4c843bf05 100644
--- a/For_developers/Sphinx/Source/Documentation/Input/templates.rst
+++ b/For_developers/Sphinx/Source/Documentation/Input/templates.rst
@@ -181,20 +181,20 @@ submitscript.template
export VERSION=7.1
case $${HOST} in
*ecg*)
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
- export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
- ;;
- *cca*)
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
- export SCRATCH=${TMPDIR}
- export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
+ ;;
+ *cca*)
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
+ export SCRATCH=${TMPDIR}
+ export PATH=${PATH}:${HOME}/flex_extract_v7.1/Source/Python
;;
esac
@@ -266,18 +266,18 @@ jobscript.template
export VERSION=$version_number
case $$$${HOST} in
*ecg*)
- module unload grib_api
- module unload emos
- module load python3
- module load eccodes
- module load emos/455-r64
+ module unload grib_api
+ module unload emos
+ module load python3
+ module load eccodes
+ module load emos/455-r64
export PATH=$$$${PATH}:$fp_root_path
;;
*cca*)
- module switch PrgEnv-cray PrgEnv-intel
- module load python3
- module load eccodes
- module load emos/455-r64
+ module switch PrgEnv-cray PrgEnv-intel
+ module load python3
+ module load eccodes
+ module load emos/455-r64
export SCRATCH=$$$${TMPDIR}
export PATH=$$$${PATH}:$fp_root_path
;;
diff --git a/For_developers/Sphinx/Source/Installation/gateway.rst b/For_developers/Sphinx/Source/Installation/gateway.rst
index 06f50a949babcea30cdd67ff8318ac4003f64b7e..6f3c8db17ebff2280dc5be261e03efaa0b460cec 100644
--- a/For_developers/Sphinx/Source/Installation/gateway.rst
+++ b/For_developers/Sphinx/Source/Installation/gateway.rst
@@ -156,14 +156,13 @@ to start the installation. You should see the following on standard output.
.. code-block:: bash
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. 1 <username> at 20 Mar 8 14:11 calc_etadot -> calc_etadot_fast.out
SUCCESS!
-
diff --git a/For_developers/Sphinx/Source/Installation/local.rst b/For_developers/Sphinx/Source/Installation/local.rst
index 9f9c012b9299f66d5ce9b7c9315f4c5481c569ce..97a23a84f0f9fa794bda86fdf7a006b26ed41b73 100644
--- a/For_developers/Sphinx/Source/Installation/local.rst
+++ b/For_developers/Sphinx/Source/Installation/local.rst
@@ -310,19 +310,19 @@ to start the installation. You should see the following standard output.
.. code-block:: bash
# Output of setup.sh
- WARNING: installdir has not been specified
- flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
- Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
-
- Using makefile: makefile_local_gfortran
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
- gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
- ln -sf calc_etadot_fast.out calc_etadot
-
- lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
+ WARNING: installdir has not been specified
+ flex_extract will be installed in here by compiling the Fortran source in <path-to-flex_extract>/flex_extract_v7.1/Source/Fortran
+ Install flex_extract_v7.1 software at local in directory <path-to-flex_extract>/flex_extract_v7.1
+
+ Using makefile: makefile_local_gfortran
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -I. -I/usr/local/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -Bstatic -leccodes_f90 -leccodes -Bdynamic -lm -ljasper -lemosR64 -fopenmp
+ ln -sf calc_etadot_fast.out calc_etadot
+
+ lrwxrwxrwx. 1 <username> tmc 20 15. Mär 13:31 ./calc_etadot -> calc_etadot_fast.out
diff --git a/For_developers/Sphinx/Source/Installation/remote.rst b/For_developers/Sphinx/Source/Installation/remote.rst
index 127e2b76b8a9142827ef35ac710a7024957425ad..be2c40b3d83c0e1f8bbbe60ac61019c91ab5726e 100644
--- a/For_developers/Sphinx/Source/Installation/remote.rst
+++ b/For_developers/Sphinx/Source/Installation/remote.rst
@@ -170,12 +170,12 @@ to start the installation. You should see the following on standard output.
.. code-block:: bash
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
- gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./rwgrib2.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./phgrreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./grphreal.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./ftrafo.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./calc_etadot.f90
+ gfortran -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -I. -I/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/include -fdefault-real-8 -fopenmp -fconvert=big-endian -c ./posnam.f90
gfortran rwgrib2.o calc_etadot.o ftrafo.o grphreal.o posnam.o phgrreal.o -o calc_etadot_fast.out -O3 -march=native -L/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -Wl,-rpath,/usr/local/apps/eccodes/2.13.0/GNU/7.3.0/lib -leccodes_f90 -leccodes -ljasper -lpthread -L/usr/local/apps/jasper/1.900.1/LP64/lib -ljasper -lm -L/usr/local/apps/libemos/000455/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/libemos/000455/GNU/6.3.0/lib -lemos.R64.D64.I32 -L/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -Wl,-rpath,/usr/local/apps/fftw/3.3.4/GNU/6.3.0/lib -lfftw3 -fopenmp
ln -sf calc_etadot_fast.out calc_etadot
lrwxrwxrwx. 1 <username> at 20 Mar 8 14:11 calc_etadot -> calc_etadot_fast.out
diff --git a/For_developers/Sphinx/Source/Support/known_bugs_issues.rst b/For_developers/Sphinx/Source/Support/known_bugs_issues.rst
index 7e2ba0ba0efa792b3420c94a8f2705ac01465d99..36ffa9318499d43d23b949efe410e514c19a1f50 100644
--- a/For_developers/Sphinx/Source/Support/known_bugs_issues.rst
+++ b/For_developers/Sphinx/Source/Support/known_bugs_issues.rst
@@ -30,12 +30,12 @@ If you get an error message from ECCODES with code 250, looking like this:
.. code-block:: bash
- ECCODES ERROR : wrong size (184) for pv it contains 276 values
- ECCODES ERROR : get: pv Passed array is too small
- ... ERROR CODE: 250
- ... ERROR MESSAGE:
- Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
- ... FORTRAN PROGRAM FAILED!
+ ECCODES ERROR : wrong size (184) for pv it contains 276 values
+ ECCODES ERROR : get: pv Passed array is too small
+ ... ERROR CODE: 250
+ ... ERROR MESSAGE:
+ Command '['<path-to-flex_extract>/flex_extract_v7.1/Source/Fortran/calc_etadot']' returned non-zero exit status 250.
+ ... FORTRAN PROGRAM FAILED!
then you have set a wrong maximum level in the :literal:`CONTROL` file!
It is important to properly select the maximum level depending on the data set you would like to retrieve. Only the following values of the number of model levels available are valid: 16, 19, 31, 40, 50, 60, 62, 91, 137.
@@ -47,4 +47,4 @@ The operational data sets use different numbers, depending on the date. For exam
.. note::
- Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
+ Be aware that the ECMWF model counts the levels from the top of the atmosphere downward to the surface. Level 1 is the topmost level, and e.g. 137 would be the level closest to the ground.
diff --git a/For_developers/Sphinx/Source/quick_start.rst b/For_developers/Sphinx/Source/quick_start.rst
index 381644220d5b9771b1e5ca93e463283a5816a7e0..903e0b20a75bd127dceab33f7f5998c08c5c09c4 100644
--- a/For_developers/Sphinx/Source/quick_start.rst
+++ b/For_developers/Sphinx/Source/quick_start.rst
@@ -427,7 +427,7 @@ Field type and time
Vertical velocity
The vertical velocity for ``FLEXPART`` is not directly available from MARS and has to be calculated.
- There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
+ There are several options for this, and the following parameters are responsible for the selection. See :doc:`Documentation/vertco` for a detailed explanation. Using ``ETADIFF 1``, ``OMEGA 1`` and ``OMEGADIFF 1`` is recommended for debugging and testing only.
Usually, one has to decide between ``GAUSS 1`` and ``ETA 1``. ``GAUSS 1`` means that spectral fields of the horizontal wind fields and the divergence are retrieved and that the vertical velocity is calculate using the continuity equation. ``ETA 1`` means that horizontal wind fields etadot are retrieved on a regular lat-lon grid. It is recommended to use ``ETA 1`` where possible, as there is a substantial computational overhead for solving the continuity equation.
.. code-block:: bash
@@ -444,8 +444,8 @@ Vertical velocity
Grid resolution and domain
The grid and domain parameters depends on each other. ``grid`` refers to the grid resolution. It can be given as decimal values (e.g., ``1.`` meaning 1.0°), or as in previous versions of flex_extract, as integer values refering to 1/1000 degrees (e.g., ``1000`` means also 1°). The code applies common sense to determine what format is to be assumed.
After selecting grid, the ``domain`` has to be defined. The extension in longitude or latitude direction must be an integer multiple of ``grid``.
-
-
+
+
The horizontal resolution for spectral fields is set by the parameter ``RESOL``. For information about how to select an appropriate value please read the explanation of the MARS keyword RESOL as found `in this entry of the ECMWF on-line documentation <https://confluence.ecmwf.int/display/UDOC/Post-processing+keywords#Post-processingkeywords-resol>`_ and `this table (also ECMWF documentation) <https://confluence.ecmwf.int/display/UDOC/Retrieve#Retrieve-Truncationbeforeinterpolation>`_.
.. code-block:: bash
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Flux data
Flux fields are always forecast fields and contain values of the fluxes accumulated since the start of the respective forecast. As certain re-analysis dataset cover all time steps with analysis fields, it was necessary to define a new parameter set for the definition of the flux fields. The following parameters are used specifically for flux fields. ``ACCTYPE`` is the field type (must be a type of forecast), ``ACCTIME`` the forecast starting time, and ``ACCMAXSTEP`` the maximum forecast step;``DTIME`` the temporal resolution. ACCTYPE is assumed to be the same during the whole period given by ACCTIME and ACCMAXSTEP. These values will be set automatically if not provided in a ``CONTROL`` file.
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:caption: Example setting for the definition of flux fields.