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Commit 51b037b8 authored by Isa H's avatar Isa H
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changing @type

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src/App.vue
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− 35
View file @ 51b037b8
...@@ -723,23 +723,23 @@ export default { ...@@ -723,23 +723,23 @@ export default {
var uniprot_assayTarget = fields.getField("1-Uniprot"); var uniprot_assayTarget = fields.getField("1-Uniprot");
uniprot_assayTarget.label = "Assay Target Uniprot record"; uniprot_assayTarget.label = "Assay Target Uniprot record";
uniprot_assayTarget.subjectType = "AssayTarget_uniprot";
uniprot_assayTarget.type = "skos:Concept"; uniprot_assayTarget.type = "pharmaWien:uniprot_protein_assayTarget";
uniprot_assayTarget.category = ["assayTarget"]; uniprot_assayTarget.category = ["assayTarget"];
var isoform_assayTarget = fields.getField("1-Isoform"); var isoform_assayTarget = fields.getField("1-Isoform");
isoform_assayTarget.label = "Assay Target Isoform"; isoform_assayTarget.label = "Assay Target Isoform";
isoform_assayTarget.subjectType = "AssayTarget_isoform";
isoform_assayTarget.type = "AssayTarget_isoform"; isoform_assayTarget.type = "pharmaWien:isoform_protein_assayTarget";
isoform_assayTarget.category = ["assayTarget"]; isoform_assayTarget.category = ["assayTarget"];
var seqAlt_assayTarget = fields.getField("1-Protein-sequence-alteration"); var seqAlt_assayTarget = fields.getField("1-Protein-sequence-alteration");
seqAlt_assayTarget.label = "Assay Target Protein sequence alteration"; seqAlt_assayTarget.label = "Assay Target Protein sequence alteration";
seqAlt_assayTarget.subjectType = "AssayTarget_seqAlt";
seqAlt_assayTarget.type = "AssayTarget_seqAlt"; seqAlt_assayTarget.type = "pharmaWien:seqAlt_protein_assayTarget";
seqAlt_assayTarget.category = ["assayTarget"]; seqAlt_assayTarget.category = ["assayTarget"];
var protMod_assayTarget = fields.getField("1-Protein-modification"); var protMod_assayTarget = fields.getField("1-Protein-modification");
protMod_assayTarget.label = "Assay Target Protein Modification"; protMod_assayTarget.label = "Assay Target Protein Modification";
protMod_assayTarget.subjectType = "AssayTargetprotMod";
protMod_assayTarget.type = "AssayTargetprotMod"; protMod_assayTarget.type = "pharmaWien:protMod_protein_assayTarget";
protMod_assayTarget.category = ["assayTarget"]; protMod_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(uniprot_assayTarget); this.form.sections[2].categories[2].fields.push(uniprot_assayTarget);
this.form.sections[2].categories[2].fields.push(isoform_assayTarget); this.form.sections[2].categories[2].fields.push(isoform_assayTarget);
...@@ -748,49 +748,49 @@ export default { ...@@ -748,49 +748,49 @@ export default {
var gene_assayTarget = fields.getField("1-Entrez-gene-ID"); var gene_assayTarget = fields.getField("1-Entrez-gene-ID");
gene_assayTarget.label = "Assay Target Entrez Gene ID"; gene_assayTarget.label = "Assay Target Entrez Gene ID";
gene_assayTarget.subjectType = "AssayTarget_geneId";
gene_assayTarget.type = "AssayTarget_geneId"; gene_assayTarget.type = "pharmaWien:geneId_gene_assayTarget";
gene_assayTarget.category = ["assayTarget"]; gene_assayTarget.category = ["assayTarget"];
var geneMod_assayTarget = fields.getField("1-Gene-modification"); var geneMod_assayTarget = fields.getField("1-Gene-modification");
geneMod_assayTarget.label = "Assay Target Gene Modification"; geneMod_assayTarget.label = "Assay Target Gene Modification";
geneMod_assayTarget.subjectType = "AssayTarget_geneMod";
geneMod_assayTarget.type = "AssayTarget_geneMod"; geneMod_assayTarget.type = "pharmaWien:geneMod_gene_assaytarget";
geneMod_assayTarget.category = ["assayTarget"]; geneMod_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(gene_assayTarget); this.form.sections[2].categories[2].fields.push(gene_assayTarget);
this.form.sections[2].categories[2].fields.push(geneMod_assayTarget); this.form.sections[2].categories[2].fields.push(geneMod_assayTarget);
var nacid_assayTarget = fields.getField("1-Nucleic-acid-type"); var nacid_assayTarget = fields.getField("1-Nucleic-acid-type");
nacid_assayTarget.label = "Assay Target Nucleic Acid Type"; nacid_assayTarget.label = "Assay Target Nucleic Acid Type";
nacid_assayTarget.subjectType = "AssayTarget_nucleic_acid";
nacid_assayTarget.type = "skos:Concept"; nacid_assayTarget.type = "pharmaWien:type_nucleicAcid_assayTarget";
nacid_assayTarget.category = ["assayTarget"]; nacid_assayTarget.category = ["assayTarget"];
nacid_assayTarget.description = "Nucleic Acid"; nacid_assayTarget.description = "Nucleic Acid";
var refSeq_assayTarget = fields.getField("1-RefSeq-accession"); var refSeq_assayTarget = fields.getField("1-RefSeq-accession");
refSeq_assayTarget.label = "Assay Target RefSeq accession:"; refSeq_assayTarget.label = "Assay Target RefSeq accession:";
refSeq_assayTarget.subjectType = "AssayTarget_refSeq";
refSeq_assayTarget.type = "AssayTarget_refSeq"; refSeq_assayTarget.type = "pharmaWien:refSeq_nucleicAcid_assayTarget";
refSeq_assayTarget.category = ["assayTarget"]; refSeq_assayTarget.category = ["assayTarget"];
refSeq_assayTarget.description = "Nucleic Acid"; refSeq_assayTarget.description = "Nucleic Acid";
this.form.sections[2].categories[2].fields.push(nacid_assayTarget); this.form.sections[2].categories[2].fields.push(nacid_assayTarget);
this.form.sections[2].categories[2].fields.push(refSeq_assayTarget); this.form.sections[2].categories[2].fields.push(refSeq_assayTarget);
var PFAM_assayTarget = fields.getField("1-PFAM-accession"); var PFAM_assayTarget = fields.getField("1-PFAM-accession");
PFAM_assayTarget.label = "Assay Target PFAM accession number"; PFAM_assayTarget.label = "Assay Target PFAM accession number";
PFAM_assayTarget.subjectType = "AssayTarget_PFAM";
PFAM_assayTarget.type = "AssayTarget_PFAM"; PFAM_assayTarget.type = "pharmaWien:PFAM_assayTarget";
PFAM_assayTarget.category = ["assayTarget"]; PFAM_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(PFAM_assayTarget); this.form.sections[2].categories[2].fields.push(PFAM_assayTarget);
var uniprotsub_assayTarget = fields.getField("1-Uniprot"); var uniprotsub_assayTarget = fields.getField("1-Uniprot");
uniprotsub_assayTarget.label = uniprotsub_assayTarget.label =
"Assay Target Protein Subunit Uniprot record"; "Assay Target Protein Subunit Uniprot record";
uniprotsub_assayTarget.subjectType = "AssayTarget_uniprot_subunit";
uniprotsub_assayTarget.type = "skos:Concept"; uniprotsub_assayTarget.type = "pharmaWien:uniprot_protSub_assayTarget";
uniprotsub_assayTarget.category = ["assayTarget"]; uniprotsub_assayTarget.category = ["assayTarget"];
uniprotsub_assayTarget.description = "Protein Subunit"; uniprotsub_assayTarget.description = "Protein Subunit";
var isoformsub_assayTarget = fields.getField("1-Isoform"); var isoformsub_assayTarget = fields.getField("1-Isoform");
isoformsub_assayTarget.label = "Assay Target Protein Subunit Isoform"; isoformsub_assayTarget.label = "Assay Target Protein Subunit Isoform";
isoformsub_assayTarget.subjectType = "AssayTarget_isoform_subunit";
isoformsub_assayTarget.type = "AssayTarget_isoform_subunit"; isoformsub_assayTarget.type = "pharmaWien:isoform_protSub_assayTarget";
isoformsub_assayTarget.category = ["assayTarget"]; isoformsub_assayTarget.category = ["assayTarget"];
isoformsub_assayTarget.description = "Protein Subunit"; isoformsub_assayTarget.description = "Protein Subunit";
var seqAltsub_assayTarget = fields.getField( var seqAltsub_assayTarget = fields.getField(
...@@ -798,13 +798,13 @@ export default { ...@@ -798,13 +798,13 @@ export default {
); );
seqAltsub_assayTarget.label = seqAltsub_assayTarget.label =
"Assay Target Protein Subunit sequence alteration"; "Assay Target Protein Subunit sequence alteration";
seqAltsub_assayTarget.subjectType = "AssayTarget_seqAlt_subunit"; seqAltsub_assayTarget.type = "pharmaWien:seqAlt_protSub_assayTarget";
seqAltsub_assayTarget.category = ["assayTarget"]; seqAltsub_assayTarget.category = ["assayTarget"];
seqAltsub_assayTarget.description = "Protein Subunit"; seqAltsub_assayTarget.description = "Protein Subunit";
var protModsub_assayTarget = fields.getField("1-Protein-modification"); var protModsub_assayTarget = fields.getField("1-Protein-modification");
protModsub_assayTarget.label = protModsub_assayTarget.label =
"Assay Target Protein Subunit modification"; "Assay Target Protein Subunit modification";
protModsub_assayTarget.subjectType = "AssayTargetprotMod_subunit"; protModsub_assayTarget.type = "pharmaWien:protMod_protSub_assayTarget";
protModsub_assayTarget.category = ["assayTarget"]; protModsub_assayTarget.category = ["assayTarget"];
protModsub_assayTarget.description = "Protein Subunit"; protModsub_assayTarget.description = "Protein Subunit";
this.form.sections[2].categories[2].fields.push(uniprotsub_assayTarget); this.form.sections[2].categories[2].fields.push(uniprotsub_assayTarget);
...@@ -816,7 +816,8 @@ export default { ...@@ -816,7 +816,8 @@ export default {
); );
protcomplex_assayTarget.label = protcomplex_assayTarget.label =
"Assay Target Protein Complex-Portal Accession"; "Assay Target Protein Complex-Portal Accession";
protcomplex_assayTarget.subjectType = "AssayTarget_proteincompex"; protcomplex_assayTarget.type =
"pharmaWien:portalAcc_protComplex_assayTarget";
protcomplex_assayTarget.category = ["assayTarget"]; protcomplex_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(protcomplex_assayTarget); this.form.sections[2].categories[2].fields.push(protcomplex_assayTarget);
this.form.sections[2].categories[2].fields.push( this.form.sections[2].categories[2].fields.push(
...@@ -824,8 +825,8 @@ export default { ...@@ -824,8 +825,8 @@ export default {
); );
var lipid_assayTarget = fields.getField("1-Lipid"); var lipid_assayTarget = fields.getField("1-Lipid");
lipid_assayTarget.label = "Assay Target Lipid"; lipid_assayTarget.label = "Assay Target Lipid";
lipid_assayTarget.type = "skos:Concept"; lipid_assayTarget.type = "pharmaWien:lipid_assayTarget";
lipid_assayTarget.subjectType = "Lipid_assayTarget";
lipid_assayTarget.category = ["assayTarget"]; lipid_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(lipid_assayTarget); this.form.sections[2].categories[2].fields.push(lipid_assayTarget);
...@@ -878,8 +879,8 @@ export default { ...@@ -878,8 +879,8 @@ export default {
); );
var cell_line_assayTarget = fields.getField("0-cell-line"); var cell_line_assayTarget = fields.getField("0-cell-line");
cell_line_assayTarget.label = "Assay Target Cell line (cellosaurus)"; cell_line_assayTarget.label = "Assay Target Cell line (cellosaurus)";
cell_line_assayTarget.type = "skos:Concept"; cell_line_assayTarget.type = "pharmaWien:cellosaurus_assayTarget";
cell_line_assayTarget.subjectType = "cell_line_assayTarget";
cell_line_assayTarget.visible = false; cell_line_assayTarget.visible = false;
cell_line_assayTarget.category = ["assayTarget"]; cell_line_assayTarget.category = ["assayTarget"];
this.form.sections[2].categories[2].fields.push(cell_line_assayTarget); this.form.sections[2].categories[2].fields.push(cell_line_assayTarget);
......
src/store/modules/vocabulary.js
+ 33
− 33
View file @ 51b037b8
...@@ -180,7 +180,7 @@ const state = { ...@@ -180,7 +180,7 @@ const state = {
bioassay_type: { bioassay_type: {
terms: [ terms: [
{ {
"@type": "assay_type", "@type": "pharmaWien:assaytype",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "ADMET", "@value": "ADMET",
...@@ -190,7 +190,7 @@ const state = { ...@@ -190,7 +190,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000009"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000009"]
}, },
{ {
"@type": "assay_type", "@type": "pharmaWien:assaytype",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Binding type", "@value": "Binding type",
...@@ -200,7 +200,7 @@ const state = { ...@@ -200,7 +200,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000041"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000041"]
}, },
{ {
"@type": "assay_type", "@type": "pharmaWien:assaytype",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Functional", "@value": "Functional",
...@@ -210,7 +210,7 @@ const state = { ...@@ -210,7 +210,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000010"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000010"]
}, },
{ {
"@type": "assay_type", "@type": "pharmaWien:assaytype",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Physicochemical", "@value": "Physicochemical",
...@@ -220,7 +220,7 @@ const state = { ...@@ -220,7 +220,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0002810"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0002810"]
}, },
{ {
"@type": "assay_type", "@type": "pharmaWien:assaytype",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Phenotype characterization", "@value": "Phenotype characterization",
...@@ -235,7 +235,7 @@ const state = { ...@@ -235,7 +235,7 @@ const state = {
anatomical_category: { anatomical_category: {
terms: [ terms: [
{ {
"@type": "skos:Concept", "@type": "pharmaWien:anatomicalCategory",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Anatomical entity, cross species", "@value": "Anatomical entity, cross species",
...@@ -245,28 +245,28 @@ const state = { ...@@ -245,28 +245,28 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/UBERON_0001062"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/UBERON_0001062"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:anatomicalCategory",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Plant anatomical entity", "@language": "eng" } { "@value": "Plant anatomical entity", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/PO_0025131"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/PO_0025131"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:anatomicalCategory",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Anatomical entity, fungi", "@language": "eng" } { "@value": "Anatomical entity, fungi", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/FAO_0000001"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/FAO_0000001"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:anatomicalCategory",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Anatomical entity, bacteria", "@language": "eng" } { "@value": "Anatomical entity, bacteria", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/OMIT_0026581"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/OMIT_0026581"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:anatomicalCategory",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Viral structures", "@language": "eng" } { "@value": "Viral structures", "@language": "eng" }
], ],
...@@ -278,14 +278,14 @@ const state = { ...@@ -278,14 +278,14 @@ const state = {
life: { life: {
terms: [ terms: [
{ {
"@type": "skos:Concept", "@type": "pharmaWien:livingOrg",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Living Organisms", "@language": "eng" } { "@value": "Living Organisms", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCBITaxon_1"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCBITaxon_1"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:livingOrg",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Cellosaurus cell-line", "@language": "eng" } { "@value": "Cellosaurus cell-line", "@language": "eng" }
], ],
...@@ -297,40 +297,40 @@ const state = { ...@@ -297,40 +297,40 @@ const state = {
biological_macromolecule: { biological_macromolecule: {
terms: [ terms: [
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [{ "@value": "Protein", "@language": "eng" }], "skos:prefLabel": [{ "@value": "Protein", "@language": "eng" }],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C17021"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C17021"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [{ "@value": "Gene", "@language": "eng" }], "skos:prefLabel": [{ "@value": "Gene", "@language": "eng" }],
"skos:exactMatch": [ "skos:exactMatch": [
"http://www.bioassayontology.org/bao#BAO_0000582 " "http://www.bioassayontology.org/bao#BAO_0000582 "
] ]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Polynucleotide", "@language": "eng" } { "@value": "Polynucleotide", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI_15986"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI_15986"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Protein Family", "@language": "eng" } { "@value": "Protein Family", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C20130"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C20130"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Protein Subunit", "@language": "eng" } { "@value": "Protein Subunit", "@language": "eng" }
], ],
"skos:exactMatch": ["http://www.bioassayontology.org/bao#"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Protein Complex", "@language": "eng" } { "@value": "Protein Complex", "@language": "eng" }
], ],
...@@ -338,14 +338,14 @@ const state = { ...@@ -338,14 +338,14 @@ const state = {
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [ "skos:prefLabel": [
{ "@value": "Polysaccharide", "@language": "eng" } { "@value": "Polysaccharide", "@language": "eng" }
], ],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI:18154"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI:18154"]
}, },
{ {
"@type": "skos:Concept", "@type": "pharmaWien:biologicalMacromolecule",
"skos:prefLabel": [{ "@value": "Lipid", "@language": "eng" }], "skos:prefLabel": [{ "@value": "Lipid", "@language": "eng" }],
"skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI:18059"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/CHEBI:18059"]
} }
...@@ -356,7 +356,7 @@ const state = { ...@@ -356,7 +356,7 @@ const state = {
assay_target: { assay_target: {
terms: [ terms: [
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Protein", "@value": "Protein",
...@@ -366,7 +366,7 @@ const state = { ...@@ -366,7 +366,7 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C17021"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C17021"]
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Gene", "@value": "Gene",
...@@ -376,7 +376,7 @@ const state = { ...@@ -376,7 +376,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000582"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0000582"]
}, },
{ {
"@type": "sAssay Target: kos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Nucleic Acid", "@value": "Nucleic Acid",
...@@ -387,7 +387,7 @@ const state = { ...@@ -387,7 +387,7 @@ const state = {
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Protein Family", "@value": "Protein Family",
...@@ -397,7 +397,7 @@ const state = { ...@@ -397,7 +397,7 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C20130"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C20130"]
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Protein Subunit", "@value": "Protein Subunit",
...@@ -407,7 +407,7 @@ const state = { ...@@ -407,7 +407,7 @@ const state = {
"skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0002555"] "skos:exactMatch": ["http://www.bioassayontology.org/bao#BAO_0002555"]
}, },
{ {
"@type": "Assay Target:skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Protein Complex", "@value": "Protein Complex",
...@@ -418,7 +418,7 @@ const state = { ...@@ -418,7 +418,7 @@ const state = {
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Carbohydrate", "@value": "Carbohydrate",
...@@ -429,7 +429,7 @@ const state = { ...@@ -429,7 +429,7 @@ const state = {
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Lipid", "@value": "Lipid",
...@@ -440,7 +440,7 @@ const state = { ...@@ -440,7 +440,7 @@ const state = {
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Small Molecule", "@value": "Small Molecule",
...@@ -450,7 +450,7 @@ const state = { ...@@ -450,7 +450,7 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C48809"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C48809"]
}, },
{ {
"@type": "organism_assay_target", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Organism", "@value": "Organism",
...@@ -460,7 +460,7 @@ const state = { ...@@ -460,7 +460,7 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C14250"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/NCIT_C14250"]
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Cultured Cell (cellosaurus)", "@value": "Cultured Cell (cellosaurus)",
...@@ -470,7 +470,7 @@ const state = { ...@@ -470,7 +470,7 @@ const state = {
"skos:exactMatch": ["http://purl.obolibrary.org/obo/CL_0000010"] "skos:exactMatch": ["http://purl.obolibrary.org/obo/CL_0000010"]
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Cellular anatomical entity", "@value": "Cellular anatomical entity",
...@@ -481,7 +481,7 @@ const state = { ...@@ -481,7 +481,7 @@ const state = {
}, },
{ {
"@type": "Assay Target: skos:Concept", "@type": "pharmaWien:assayTarget",
"skos:prefLabel": [ "skos:prefLabel": [
{ {
"@value": "Tissue", "@value": "Tissue",
......
src/utils/fields.js
+ 40
− 40
View file @ 51b037b8
...@@ -1060,7 +1060,7 @@ const fields = [ ...@@ -1060,7 +1060,7 @@ const fields = [
id: "0-Assay-result", id: "0-Assay-result",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "skos:Concept",
subjectType: "assay_result", //subjectType: "assay_result",
label: "Uploaded file with assay result", label: "Uploaded file with assay result",
value: "", value: "",
component: "assay-selection", component: "assay-selection",
...@@ -1076,8 +1076,8 @@ const fields = [ ...@@ -1076,8 +1076,8 @@ const fields = [
{ {
id: "0-Assay-title", id: "0-Assay-title",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "Assay-title", type: "pharmaWien:assayTitle",
subjectType: "Assaytitle", //subjectType: "Assaytitle",
visible: true, visible: true,
required: false, required: false,
removable: false, removable: false,
...@@ -1094,8 +1094,8 @@ const fields = [ ...@@ -1094,8 +1094,8 @@ const fields = [
{ {
id: "0-Assay-protocol", id: "0-Assay-protocol",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "Assay-abstract", type: "pharmaWien:assayAbstract",
subjectType: "AssayAbstract", //subjectType: "AssayAbstract",
visible: true, visible: true,
required: false, required: false,
removable: false, removable: false,
...@@ -1113,7 +1113,7 @@ const fields = [ ...@@ -1113,7 +1113,7 @@ const fields = [
id: "0-Bioassay-type", id: "0-Bioassay-type",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "skos:Concept",
subjectType: "Bioassay_type", //subjectType: "Bioassay_type",
label: "Bioassay type:", label: "Bioassay type:",
visible: true, visible: true,
required: false, required: false,
...@@ -1121,7 +1121,7 @@ const fields = [ ...@@ -1121,7 +1121,7 @@ const fields = [
component: "selection", component: "selection",
commit: true, commit: true,
visible: true, visible: true,
category: ["assay"], //category: ["assay"],
vocabulary: "bioassay_type", vocabulary: "bioassay_type",
stateVoc: "bioassay_type", stateVoc: "bioassay_type",
info: "" info: ""
...@@ -1129,8 +1129,8 @@ const fields = [ ...@@ -1129,8 +1129,8 @@ const fields = [
{ {
id: "0-Bioassay-category", id: "0-Bioassay-category",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:bioassayCategory",
subjectType: "bioassayCategory", //subjectType: "bioassayCategory",
label: "Bioassay category:", label: "Bioassay category:",
value: "", value: "",
visible: true, visible: true,
...@@ -1139,7 +1139,7 @@ const fields = [ ...@@ -1139,7 +1139,7 @@ const fields = [
component: "ext-service", component: "ext-service",
ontology: "bao", ontology: "bao",
ontClass: "BAO_0000015", ontClass: "BAO_0000015",
category: ["assay"], //category: ["assay"],
topId: "BAO_0000015", topId: "BAO_0000015",
description: "Bioassay category:", description: "Bioassay category:",
info: info:
...@@ -1149,8 +1149,8 @@ const fields = [ ...@@ -1149,8 +1149,8 @@ const fields = [
{ {
id: "0-Assay-format", id: "0-Assay-format",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayFormat",
subjectType: "Assayformat", //subjectType: "Assayformat",
label: "Assay format", label: "Assay format",
visible: true, visible: true,
required: false, required: false,
...@@ -1161,7 +1161,7 @@ const fields = [ ...@@ -1161,7 +1161,7 @@ const fields = [
ontClass: "BAO_0000019", ontClass: "BAO_0000019",
topId: "BAO_0000019", topId: "BAO_0000019",
description: "Assay format:", description: "Assay format:",
category: ["assay"], //category: ["assay"],
info: info:
"Assay format is a conceptualization of assays based on the biological and / or chemical features of the experimental system. For example assay formats include biochemical assays - referring to assays with purified protein, cell-based - referring to assays in whole cells, or organism-based - referring to assays performed in an organism.", "Assay format is a conceptualization of assays based on the biological and / or chemical features of the experimental system. For example assay formats include biochemical assays - referring to assays with purified protein, cell-based - referring to assays in whole cells, or organism-based - referring to assays performed in an organism.",
infoRef: "http://www.bioassayontology.org/bao#BAO_0000019" infoRef: "http://www.bioassayontology.org/bao#BAO_0000019"
...@@ -1169,8 +1169,8 @@ const fields = [ ...@@ -1169,8 +1169,8 @@ const fields = [
{ {
id: "0-Assay-design-method", id: "0-Assay-design-method",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayDesignMethod",
subjectType: "Assay design method", //subjectType: "Assay design method",
label: "Assay design method", label: "Assay design method",
visible: true, visible: true,
required: false, required: false,
...@@ -1180,7 +1180,7 @@ const fields = [ ...@@ -1180,7 +1180,7 @@ const fields = [
ontology: "bao", ontology: "bao",
// baseurl: "http://www.bioassayontology.org/bao#", // baseurl: "http://www.bioassayontology.org/bao#",
ontClass: "BAO_0002202", ontClass: "BAO_0002202",
category: ["assay"], //category: ["assay"],
topId: "BAO_0002202", topId: "BAO_0002202",
description: "Assay design method:", description: "Assay design method:",
info: info:
...@@ -1191,15 +1191,15 @@ const fields = [ ...@@ -1191,15 +1191,15 @@ const fields = [
{ {
id: "0-Computational-method", id: "0-Computational-method",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayComputationalMethod",
subjectType: "Computational method", //subjectType: "Computational method",
label: "Computational method", label: "Computational method",
visible: true, visible: true,
required: false, required: false,
value: "", value: "",
freefield: true, freefield: true,
component: "ext-service", component: "ext-service",
category: ["assay"], //category: ["assay"],
ontology: "bao", ontology: "bao",
//baseurl: "http://www.bioassayontology.org/bao#", //baseurl: "http://www.bioassayontology.org/bao#",
ontClass: "BAO_0002094", ontClass: "BAO_0002094",
...@@ -1212,8 +1212,8 @@ const fields = [ ...@@ -1212,8 +1212,8 @@ const fields = [
{ {
id: "0-Assay-screening-campaign-stage", id: "0-Assay-screening-campaign-stage",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayScreeningCampaignStage",
subjectType: "Assay screening campaign stage", //subjectType: "Assay screening campaign stage",
label: "Assay screening campaign stage", label: "Assay screening campaign stage",
visible: true, visible: true,
required: false, required: false,
...@@ -1223,7 +1223,7 @@ const fields = [ ...@@ -1223,7 +1223,7 @@ const fields = [
ontology: "bao", ontology: "bao",
ontClass: "BAO_0000029", ontClass: "BAO_0000029",
topId: "BAO_0000029", topId: "BAO_0000029",
category: ["assay"], //category: ["assay"],
// baseurl: "http://www.bioassayontology.org/bao#", // baseurl: "http://www.bioassayontology.org/bao#",
description: "Assay screening campaign stage:", description: "Assay screening campaign stage:",
info: info:
...@@ -1234,7 +1234,7 @@ const fields = [ ...@@ -1234,7 +1234,7 @@ const fields = [
id: "0-Organism", id: "0-Organism",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "skos:Concept",
subjectType: "AssayOrganism:", //subjectType: "AssayOrganism:",
label: "Organism", label: "Organism",
description: "selection", description: "selection",
value: "", value: "",
...@@ -1253,8 +1253,8 @@ const fields = [ ...@@ -1253,8 +1253,8 @@ const fields = [
{ {
id: "0-Cellular-organism", id: "0-Cellular-organism",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayCellularOrganism",
subjectType: "AssayCellularOrganism", //subjectType: "AssayCellularOrganism",
label: "Cellular organism", label: "Cellular organism",
value: "", value: "",
required: false, required: false,
...@@ -1270,8 +1270,8 @@ const fields = [ ...@@ -1270,8 +1270,8 @@ const fields = [
{ {
id: "0-Viruses", id: "0-Viruses",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayViruses",
subjectType: "AssayViruses", //subjectType: "AssayViruses",
label: "Viruses", label: "Viruses",
value: "", value: "",
required: false, required: false,
...@@ -1287,8 +1287,8 @@ const fields = [ ...@@ -1287,8 +1287,8 @@ const fields = [
{ {
id: "0-Viroids", id: "0-Viroids",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayViroids",
subjectType: "AssayViroids", //subjectType: "AssayViroids",
label: "Viroids", label: "Viroids",
value: "", value: "",
required: false, required: false,
...@@ -1304,8 +1304,8 @@ const fields = [ ...@@ -1304,8 +1304,8 @@ const fields = [
{ {
id: "0-cell-line", id: "0-cell-line",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:assayCellosaurus",
subjectType: "cell line cellosaurus", //subjectType: "cell line cellosaurus",
label: "Cultured cell", label: "Cultured cell",
visible: true, visible: true,
required: false, required: false,
...@@ -1323,7 +1323,7 @@ const fields = [ ...@@ -1323,7 +1323,7 @@ const fields = [
id: "0-Assay-target", id: "0-Assay-target",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "skos:Concept",
subjectType: "Assay_target", //subjectType: "Assay_target",
label: "Assay target ", label: "Assay target ",
description: "selection", description: "selection",
value: "", value: "",
...@@ -1343,8 +1343,8 @@ const fields = [ ...@@ -1343,8 +1343,8 @@ const fields = [
{ {
id: "0-Small-molecule", id: "0-Small-molecule",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:smallMol_assayTarget",
subjectType: "assay target small molecule", //subjectType: "assay target small molecule",
label: "Small molecule name:", label: "Small molecule name:",
value: "", value: "",
required: false, required: false,
...@@ -1361,8 +1361,8 @@ const fields = [ ...@@ -1361,8 +1361,8 @@ const fields = [
{ {
id: "0-cellular-anatomical-entity", id: "0-cellular-anatomical-entity",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:cellularAnatomicalEntity",
subjectType: "cellular-anatomical-entity_assayTarget", //subjectType: "cellular-anatomical-entity_assayTarget",
label: "Assay Target Cellular anatomical entity", label: "Assay Target Cellular anatomical entity",
value: "", value: "",
required: false, required: false,
...@@ -1381,8 +1381,8 @@ const fields = [ ...@@ -1381,8 +1381,8 @@ const fields = [
{ {
id: "0-tissue", id: "0-tissue",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "pharmaWien:tissue_assayTarget",
subjectType: "tissue_assayTarget", //subjectType: "tissue_assayTarget",
label: "Assay Target Tissue name:", label: "Assay Target Tissue name:",
value: "", value: "",
required: false, required: false,
...@@ -1402,8 +1402,8 @@ const fields = [ ...@@ -1402,8 +1402,8 @@ const fields = [
{ {
id: "0-carbohydrate", id: "0-carbohydrate",
predicate: "dcterms:subject", predicate: "dcterms:subject",
type: "skos:Concept", type: "harmaWien:carbohydrate_assayTarget",
subjectType: "assay target carbohydrate", //subjectType: "assay target carbohydrate",
label: "Assay Target Carbohydrate:", label: "Assay Target Carbohydrate:",
value: "", value: "",
required: false, required: false,
......
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