diff --git a/.docker/docker-compose.yml b/.docker/docker-compose.yml
index c0c8cf091311910c28fba797fefa4ba31b83d52d..5bd915c9801c58af037ff8f2171fd93cb37efca7 100644
--- a/.docker/docker-compose.yml
+++ b/.docker/docker-compose.yml
@@ -75,7 +75,7 @@ services:
restart: "no"
container_name: dbrepo-auth-service
hostname: auth-service
- image: registry.datalab.tuwien.ac.at/dbrepo/auth-service:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/auth-service:1.4.5
healthcheck:
test: curl -sSL 'http://0.0.0.0:8080/realms/dbrepo' | grep "dbrepo" || exit 1
interval: 15s
@@ -99,7 +99,7 @@ services:
restart: "no"
container_name: dbrepo-metadata-service
hostname: metadata-service
- image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.4.5
volumes:
- "${SHARED_VOLUME:-/tmp}:/tmp"
environment:
@@ -162,7 +162,7 @@ services:
restart: "no"
container_name: dbrepo-analyse-service
hostname: analyse-service
- image: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.4.5
environment:
AUTH_SERVICE_CLIENT: ${AUTH_SERVICE_CLIENT:-dbrepo-client}
AUTH_SERVICE_CLIENT_SECRET: ${AUTH_SERVICE_CLIENT:-MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}
@@ -212,7 +212,7 @@ services:
restart: "no"
container_name: dbrepo-search-db
hostname: search-db
- image: registry.datalab.tuwien.ac.at/dbrepo/search-db:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/search-db:1.4.5
healthcheck:
test: curl -sSL localhost:9200/_plugins/_security/health | jq .status | grep UP
interval: 10s
@@ -236,7 +236,7 @@ services:
restart: "no"
container_name: dbrepo-search-service
hostname: search-service
- image: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.4.5
environment:
AUTH_SERVICE_CLIENT: ${AUTH_SERVICE_CLIENT:-dbrepo-client}
AUTH_SERVICE_CLIENT_SECRET: ${AUTH_SERVICE_CLIENT_SECRET:-MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}
@@ -253,7 +253,7 @@ services:
restart: "no"
container_name: dbrepo-data-db-sidecar
hostname: data-db-sidecar
- image: registry.datalab.tuwien.ac.at/dbrepo/data-db-sidecar:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/data-db-sidecar:1.4.5
environment:
S3_ACCESS_KEY_ID: "${S3_ACCESS_KEY_ID:-seaweedfsadmin}"
S3_BUCKET: "${S3_BUCKET:-dbrepo}"
@@ -274,7 +274,7 @@ services:
restart: "no"
container_name: dbrepo-ui
hostname: ui
- image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.5
environment:
NUXT_PUBLIC_API_CLIENT: "${BASE_URL:-http://localhost}"
NUXT_PUBLIC_API_SERVER: "${BASE_URL:-http://localhost}"
@@ -345,7 +345,7 @@ services:
restart: "no"
container_name: dbrepo-search-service-init
hostname: search-service-init
- image: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.4.5
environment:
METADATA_SERVICE_ENDPOINT: ${METADATA_SERVICE_ENDPOINT:-http://metadata-service:8080}
OPENSEARCH_HOST: ${OPENSEARCH_HOST:-search-db}
@@ -426,7 +426,7 @@ services:
restart: "no"
container_name: dbrepo-storage-service-init
hostname: storage-service-init
- image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.4.5
environment:
WEED_CLUSTER_SW_MASTER: "${STORAGE_SERVICE_MASTER_ENDPOINT:-storage-service:9333}"
S3_BUCKET: "${S3_BUCKET:-dbrepo}"
@@ -466,7 +466,7 @@ services:
restart: "no"
container_name: dbrepo-data-service
hostname: data-service
- image: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.4.5
volumes:
- "${SHARED_VOLUME:-/tmp}:/tmp"
environment:
diff --git a/.docs/api/ui.md b/.docs/api/ui.md
index 3e53ab2c376d6cde6c582e352171ad0836882864..cfffcebc0f733e6569b88f8dc3a31b867cc745e5 100644
--- a/.docs/api/ui.md
+++ b/.docs/api/ui.md
@@ -6,7 +6,7 @@ author: Martin Weise
!!! debug "Debug Information"
- Image: [`registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.6`](https://hub.docker.com/r/dbrepo/ui)
+ Image: [`registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.5`](https://hub.docker.com/r/dbrepo/ui)
* Ports: 3000/tcp
@@ -37,7 +37,7 @@ image as well, in this example we want to mount a custom logo `my_logo.png` into
```yaml title="docker-compose.yml"
services:
dbrepo-ui:
- image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.5
volumes:
- ./my_logo.png:/app/.output/public/my_logo.png
- ./favicon.ico:/app/.output/public/favicon.ico
diff --git a/.docs/index.md b/.docs/index.md
index 9142377a93fe205391fda8771f6697df3260272d..2124a205b7735d424481d38bd790e2a02d709c92 100644
--- a/.docs/index.md
+++ b/.docs/index.md
@@ -8,7 +8,7 @@ author: Martin Weise
[](https://hub.docker.com/u/dbrepo){ tabindex=-1 }
[](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services){ tabindex=-1 }
-Documentation for version: [v1.4.6](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
+Documentation for version: [v1.4.5](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
DBRepo is a repository for data in databases that are used from the beginning until the end of a research
project supporting data evolution, -citation and -versioning. It implements the query store of the
diff --git a/.docs/installation.md b/.docs/installation.md
index 5f9a45199a50b579c1255b8362bf0e40ca0b995d..9c864ead4686a1b4c417147ad564740aeb5b8c8e 100644
--- a/.docs/installation.md
+++ b/.docs/installation.md
@@ -11,7 +11,7 @@ author: Martin Weise
If you have [Docker](https://docs.docker.com/engine/install/) already installed on your system, you can install DBRepo with:
```shell
-curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.6/install.sh | bash
+curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.5/install.sh | bash
```
!!! bug "Default installation security disclaimer"
@@ -39,7 +39,7 @@ SSL/TLS certificate is recommended. Follow the [secure install](#secure-install)
Execute the install script to download only the environment and save it to `dist`.
```shell
-curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.6/install.sh | DOWNLOAD_ONLY=1 bash
+curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.5/install.sh | DOWNLOAD_ONLY=1 bash
```
### Static Configuration
@@ -81,7 +81,7 @@ the variable `IDENTITY_SERVICE_ADMIN_PASSWORD` in `.env`.
Update the client secret of the `dbrepo-client`:
```bash
-curl -sSL "https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.6/.scripts/reg-client-secret.sh" | bash
+curl -sSL "https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.5/.scripts/reg-client-secret.sh" | bash
```
Also, update the JWT key according to the
diff --git a/.docs/kubernetes.md b/.docs/kubernetes.md
index d6689058d6896b2e8449ff482a60a35a7d99b9cf..04799b4edf3425f5ba46a7b0a1f140e092414ae0 100644
--- a/.docs/kubernetes.md
+++ b/.docs/kubernetes.md
@@ -7,7 +7,7 @@ author: Martin Weise
## TL;DR
To install DBRepo in your existing cluster, download the
-sample [`values.yaml`](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/blob/release-1.4.6/helm/dbrepo/values.yaml)
+sample [`values.yaml`](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/blob/release-1.4.5/helm/dbrepo/values.yaml)
for your deployment and update the variables, especially `hostname`.
```shell
@@ -15,7 +15,7 @@ helm upgrade --install dbrepo \
-n dbrepo \
"oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" \
--values ./values.yaml \
- --version "1.4.6" \
+ --version "1.4.5" \
--create-namespace \
--cleanup-on-fail
```
@@ -36,7 +36,7 @@ brokerservice:
The `brokerservice.auth.passwordHash` field is the RabbitMQ SHA512-hash of the `brokerservice.auth.password` field and
can be obtained with
-the [`generate-rabbitmq-pw.sh`](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/blob/release-1.4.6/helm/dbrepo/hack/generate-rabbitmq-pw.sh)
+the [`generate-rabbitmq-pw.sh`](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/blob/release-1.4.5/helm/dbrepo/hack/generate-rabbitmq-pw.sh)
script:
```console
diff --git a/.docs/redirect.html b/.docs/redirect.html
index 035de3cbfe860773c99ac3f7ebd072f4cca66c40..4e513b2170628796d31b592b0e5b3190cfb0fe09 100644
--- a/.docs/redirect.html
+++ b/.docs/redirect.html
@@ -5,16 +5,16 @@
<head>
<meta charset="UTF-8">
<title>Redirect Notice</title>
- <meta http-equiv="Refresh" content="0; url='/infrastructures/dbrepo/1.4.6/'" />
+ <meta http-equiv="Refresh" content="0; url='/infrastructures/dbrepo/1.4.5/'" />
</head>
<body>
<h1>Redirect Notice</h1>
<p>
- This page should automatically open the documentation for version <code>1.4.6</code>. In case this page does not load the site is
+ This page should automatically open the documentation for version <code>1.4.5</code>. In case this page does not load the site is
available at:
</p>
<p>
- <a href="/infrastructures/dbrepo/1.4.6/">/infrastructures/dbrepo/1.4.6/</a>
+ <a href="/infrastructures/dbrepo/1.4.5/">/infrastructures/dbrepo/1.4.5/</a>
</p>
</body>
</html>
\ No newline at end of file
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index 9f048df9a44ad1812a3cd0b0f8298c7ad459759d..817bb16f1eab2b33ae7443d1a0f8e1debfb8ba94 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -3,8 +3,8 @@ variables:
DOCKER_HOST: "unix:///var/run/dind/docker.sock"
TESTCONTAINERS_RYUK_DISABLED: "false"
PYTHON_VERSION: "3.11"
- APP_VERSION: "1.4.6"
- CHART_VERSION: "1.4.6"
+ APP_VERSION: "1.4.5"
+ CHART_VERSION: "1.4.5"
CACHE_FALLBACK_KEY: ${CI_DEFAULT_BRANCH}
# This will supress any download for dependencies and plugins or upload messages which would clutter the console log.
# `showDateTime` will show the passed time in milliseconds. You need to specify `--batch-mode` to make this work.
diff --git a/Makefile b/Makefile
index 8c85acc01e6ab33dcd88b13e9229ae85e9b48b75..45492281091e6c88f50d353064119709992ab953 100644
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,7 @@
.PHONY: all
-APP_VERSION ?= 1.4.6
-CHART_VERSION ?= 1.4.6
+APP_VERSION ?= 1.4.5
+CHART_VERSION ?= 1.4.5
REPOSITORY_URL ?= registry.datalab.tuwien.ac.at/dbrepo
.PHONY: all
diff --git a/README.md b/README.md
index 1c51793eb99fd9eae99ad98f4ba8686e9ad506a5..e4f843507c43232f4817dbd562b49594d75d9385 100644
--- a/README.md
+++ b/README.md
@@ -15,7 +15,7 @@ If you have [Docker](https://docs.docker.com/engine/install/) already installed
with:
```bash
-curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.6/install.sh | bash
+curl -sSL https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/raw/release-1.4.5/install.sh | bash
```
## Documentation
diff --git a/dbrepo-analyse-service/Pipfile b/dbrepo-analyse-service/Pipfile
index 158a03e2d175cc9d8a421adb0441b4c832f20622..a0fb0bfd7be1fdb83dfacbcf42dc1bc557f83d82 100644
--- a/dbrepo-analyse-service/Pipfile
+++ b/dbrepo-analyse-service/Pipfile
@@ -21,7 +21,7 @@ numpy = "*"
pandas = "*"
minio = "*"
pydantic = "*"
-dbrepo = {path = "./lib/dbrepo-1.4.6.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.4.5.tar.gz"}
opensearch-py = "*"
[dev-packages]
diff --git a/dbrepo-analyse-service/Pipfile.lock b/dbrepo-analyse-service/Pipfile.lock
index 8dd1014dd04aa0ce09ec9cec6d6cd0cceb3c4e7a..ea348a0db02fc733632c8b2e3cfc2feb8fb89c05 100644
--- a/dbrepo-analyse-service/Pipfile.lock
+++ b/dbrepo-analyse-service/Pipfile.lock
@@ -428,7 +428,7 @@
"sha256:d5e248e25fb3787d085e3d27c81108408f963ca662d7778bc98288ca0d747940"
],
"markers": "python_version >= '3.11'",
- "path": "./lib/dbrepo-1.4.6.tar.gz"
+ "path": "./lib/dbrepo-1.4.5.tar.gz"
},
"events": {
"hashes": [
diff --git a/dbrepo-analyse-service/app.py b/dbrepo-analyse-service/app.py
index 651826558103cf1f9f0829663c24935995c4a6d1..def401c0e28e5c16c264d5fd280e5435fc44c45e 100644
--- a/dbrepo-analyse-service/app.py
+++ b/dbrepo-analyse-service/app.py
@@ -188,7 +188,7 @@ template = {
"info": {
"title": "Database Repository Analyse Service API",
"description": "Service that analyses data structures",
- "version": "1.4.6",
+ "version": "1.4.5",
"contact": {
"name": "Prof. Andreas Rauber",
"email": "andreas.rauber@tuwien.ac.at"
@@ -200,7 +200,7 @@ template = {
},
"externalDocs": {
"description": "Sourcecode Documentation",
- "url": "https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/"
+ "url": "https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/"
},
"servers": [
{
diff --git a/dbrepo-data-service/pom.xml b/dbrepo-data-service/pom.xml
index 9aefac5d757bd6e71c164b3f3fdcb8780ba56708..ed3a433c729d87685dc31e039ce022e08e872177 100644
--- a/dbrepo-data-service/pom.xml
+++ b/dbrepo-data-service/pom.xml
@@ -11,7 +11,7 @@
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
<name>dbrepo-data-service</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<description>Service that manages the data</description>
diff --git a/dbrepo-data-service/querystore/pom.xml b/dbrepo-data-service/querystore/pom.xml
index 3d301be50f460d547e635cf27d9bbd64e17c3261..57bb5dd76ca4f08668eab02c0391ef54a7ea5fa5 100644
--- a/dbrepo-data-service/querystore/pom.xml
+++ b/dbrepo-data-service/querystore/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-data-service-querystore</artifactId>
<name>dbrepo-data-service-querystore</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies/>
diff --git a/dbrepo-data-service/report/pom.xml b/dbrepo-data-service/report/pom.xml
index 76bce1e9290ecf4a74283c0f1f95d9575617f67e..10663ef86dfa470e69a0254308d00761af5f7a44 100644
--- a/dbrepo-data-service/report/pom.xml
+++ b/dbrepo-data-service/report/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>report</artifactId>
<name>dbrepo-data-service-report</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<description>
This module is only intended for the pipeline coverage report. See the detailed report in the
respective modules
diff --git a/dbrepo-data-service/rest-service/pom.xml b/dbrepo-data-service/rest-service/pom.xml
index 214912d816594f01618f0d631b224e1246be29bf..9eb7ec933b8a66a8984d900f2382b838e2c6b2d5 100644
--- a/dbrepo-data-service/rest-service/pom.xml
+++ b/dbrepo-data-service/rest-service/pom.xml
@@ -6,18 +6,18 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>rest-service</artifactId>
<name>dbrepo-data-service-rest-service</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
<groupId>at.tuwien</groupId>
<artifactId>services</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</dependency>
</dependencies>
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
index 540e17850a535b8776daf4a6a7bf53a5499f1838..d69ea86e683faf960e7dd0b64ab01b10144c44c3 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
@@ -194,6 +194,7 @@ public class SchemaServiceIntegrationTest extends AbstractUnitTest {
assertEquals(1, uniques.size());
final UniqueDto unique0 = uniques.get(0);
assertNotNull(unique0.getTable());
+ assertEquals("some_constraint", unique0.getName());
assertNull(unique0.getTable().getId());
assertEquals(TABLE_1_INTERNALNAME, unique0.getTable().getName());
assertEquals(TABLE_1_INTERNALNAME, unique0.getTable().getInternalName());
diff --git a/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql b/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
index 7c3ca99ce39f61755752d2ecbb607ad6ed86e386..10cbf855655b57d02b4ed561d0c3cf50f0272dc4 100644
--- a/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
+++ b/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
@@ -17,7 +17,7 @@ CREATE TABLE weather_aus
mintemp DOUBLE PRECISION NULL,
rainfall DOUBLE PRECISION NULL,
FOREIGN KEY (location) REFERENCES weather_location (location) ON DELETE SET NULL,
- UNIQUE (`date`),
+ CONSTRAINT some_constraint UNIQUE (`date`),
CHECK (`mintemp` > 0)
) WITH SYSTEM VERSIONING COMMENT 'Weather in Australia';
diff --git a/dbrepo-data-service/services/pom.xml b/dbrepo-data-service/services/pom.xml
index ccb8ca4360458a9db0797a7f833703dc1d7dc4ca..0b57ceef9d0e575cdedd03c769ecc24aacf682e5 100644
--- a/dbrepo-data-service/services/pom.xml
+++ b/dbrepo-data-service/services/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>services</artifactId>
<name>dbrepo-data-service-services</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
@@ -22,7 +22,7 @@
<dependency>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service-querystore</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</dependency>
</dependencies>
diff --git a/dbrepo-metadata-db/1_setup-schema.sql b/dbrepo-metadata-db/1_setup-schema.sql
index 272836d4c279f5b5f3bfecec3b8188a8266c5237..9f0f2775cbd235973c1c44d773fa3efe79da5728 100644
--- a/dbrepo-metadata-db/1_setup-schema.sql
+++ b/dbrepo-metadata-db/1_setup-schema.sql
@@ -1,564 +1,565 @@
- BEGIN;
-
- CREATE TABLE IF NOT EXISTS `mdb_users`
- (
- id character varying(36) NOT NULL,
- username character varying(255) NOT NULL,
- firstname character varying(255),
- lastname character varying(255),
- email character varying(255) NOT NULL,
- orcid character varying(255),
- affiliation character varying(255),
- mariadb_password character varying(255) NOT NULL,
- theme character varying(255) NOT NULL default ('light'),
- language character varying(3) NOT NULL default ('en'),
- PRIMARY KEY (id),
- UNIQUE (username),
- UNIQUE (email)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_images`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- registry character varying(255) NOT NULL DEFAULT 'docker.io',
- name character varying(255) NOT NULL,
- version character varying(255) NOT NULL,
- default_port integer NOT NULL,
- dialect character varying(255) NOT NULL,
- driver_class character varying(255) NOT NULL,
- jdbc_method character varying(255) NOT NULL,
- is_default BOOLEAN NOT NULL DEFAULT FALSE,
- created timestamp NOT NULL DEFAULT NOW(),
- last_modified timestamp,
- PRIMARY KEY (id),
- UNIQUE (name, version),
- UNIQUE (is_default)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_images_date`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- iid bigint NOT NULL,
- database_format character varying(255) NOT NULL,
- unix_format character varying(255) NOT NULL,
- example character varying(255) NOT NULL,
- has_time boolean NOT NULL,
- created_at timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (id),
- FOREIGN KEY (iid) REFERENCES mdb_images (id),
- UNIQUE (database_format, unix_format, example)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_containers`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- internal_name character varying(255) NOT NULL,
- name character varying(255) NOT NULL,
- host character varying(255) NOT NULL,
- port integer NOT NULL default 3306,
- ui_host character varying(255) NOT NULL default host,
- ui_port integer NOT NULL default port,
- ui_additional_flags text,
- sidecar_host character varying(255),
- sidecar_port integer,
- image_id bigint NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- last_modified timestamp,
- privileged_username character varying(255) NOT NULL,
- privileged_password character varying(255) NOT NULL,
- quota integer NOT NULL DEFAULT 50,
- PRIMARY KEY (id),
- FOREIGN KEY (image_id) REFERENCES mdb_images (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_data`
- (
- ID bigint NOT NULL AUTO_INCREMENT,
- PROVENANCE text,
- FileEncoding text,
- FileType character varying(100),
- Version text,
- Seperator text,
- PRIMARY KEY (ID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_licenses`
- (
- identifier character varying(255) NOT NULL,
- uri text NOT NULL,
- description text NOT NULL,
- PRIMARY KEY (identifier),
- UNIQUE (uri(200))
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_databases`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- cid bigint NOT NULL,
- name character varying(255) NOT NULL,
- internal_name character varying(255) NOT NULL,
- exchange_name character varying(255) NOT NULL,
- description text,
- engine character varying(20),
- is_public boolean NOT NULL DEFAULT TRUE,
- image longblob,
- created_by character varying(36),
- owned_by character varying(36),
- contact_person character varying(36),
- created timestamp NOT NULL DEFAULT NOW(),
- last_modified timestamp,
- PRIMARY KEY (id),
- FOREIGN KEY (cid) REFERENCES mdb_containers (id) /* currently we only support one-to-one */,
- FOREIGN KEY (created_by) REFERENCES mdb_users (id),
- FOREIGN KEY (owned_by) REFERENCES mdb_users (id),
- FOREIGN KEY (contact_person) REFERENCES mdb_users (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_databases_subjects`
- (
- dbid BIGINT NOT NULL,
- subjects character varying(255) NOT NULL,
- PRIMARY KEY (dbid, subjects)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_tables`
- (
- ID bigint NOT NULL AUTO_INCREMENT,
- tDBID bigint NOT NULL,
- tName VARCHAR(64) NOT NULL,
- internal_name VARCHAR(64) NOT NULL,
- queue_name VARCHAR(255) NOT NULL,
- routing_key VARCHAR(255),
- tDescription VARCHAR(2048),
- num_rows BIGINT,
- data_length BIGINT,
- max_data_length BIGINT,
- avg_row_length BIGINT,
- `separator` CHAR(1),
- quote CHAR(1),
- element_null VARCHAR(50),
- skip_lines BIGINT,
- element_true VARCHAR(50),
- element_false VARCHAR(50),
- Version TEXT,
- created timestamp NOT NULL DEFAULT NOW(),
- versioned boolean not null default true,
- created_by character varying(36) NOT NULL,
- owned_by character varying(36) NOT NULL,
- last_modified timestamp,
- PRIMARY KEY (ID),
- UNIQUE (tDBID, internal_name),
- FOREIGN KEY (tDBID) REFERENCES mdb_databases (id),
- FOREIGN KEY (created_by) REFERENCES mdb_users (id),
- FOREIGN KEY (owned_by) REFERENCES mdb_users (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns`
- (
- ID BIGINT NOT NULL AUTO_INCREMENT,
- tID BIGINT NOT NULL,
- dfID BIGINT,
- cName VARCHAR(64),
- internal_name VARCHAR(64) NOT NULL,
- Datatype ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'),
- length BIGINT NULL,
- ordinal_position INTEGER NOT NULL,
- index_length BIGINT NULL,
- description VARCHAR(2048),
- size BIGINT,
- d BIGINT,
- auto_generated BOOLEAN DEFAULT false,
- is_null_allowed BOOLEAN NOT NULL DEFAULT true,
- val_min NUMERIC NULL,
- val_max NUMERIC NULL,
- mean NUMERIC NULL,
- median NUMERIC NULL,
- std_dev Numeric NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- last_modified timestamp,
- FOREIGN KEY (tID) REFERENCES mdb_tables (ID) ON DELETE CASCADE,
- PRIMARY KEY (ID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_enums`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- column_id bigint NOT NULL,
- value CHARACTER VARYING(255) NOT NULL,
- FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE,
- PRIMARY KEY (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_sets`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- column_id bigint NOT NULL,
- value CHARACTER VARYING(255) NOT NULL,
- FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE,
- PRIMARY KEY (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_nom`
- (
- tID bigint,
- cID bigint,
- maxlength INTEGER,
- last_modified timestamp,
- created timestamp NOT NULL DEFAULT NOW(),
- FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID),
- PRIMARY KEY (tID, cID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_cat`
- (
- tID bigint,
- cID bigint,
- num_cat INTEGER,
- -- cat_array TEXT[],
- last_modified timestamp,
- created timestamp NOT NULL DEFAULT NOW(),
- FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID),
- PRIMARY KEY (tID, cID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key`
- (
- fkid BIGINT NOT NULL AUTO_INCREMENT,
- tid BIGINT NOT NULL,
- rtid BIGINT NOT NULL,
- name VARCHAR(255) NOT NULL,
- on_update VARCHAR(50) NULL,
- on_delete VARCHAR(50) NULL,
- position INT NULL,
- PRIMARY KEY (fkid),
- FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE,
- FOREIGN KEY (rtid) REFERENCES mdb_tables (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_primary_key`
- (
- pkid BIGINT NOT NULL AUTO_INCREMENT,
- tID BIGINT NOT NULL,
- cid BIGINT NOT NULL,
- PRIMARY KEY (pkid),
- FOREIGN KEY (tID) REFERENCES mdb_tables (id) ON DELETE CASCADE,
- FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key_reference`
- (
- id BIGINT NOT NULL AUTO_INCREMENT,
- fkid BIGINT NOT NULL,
- cid BIGINT NOT NULL,
- rcid BIGINT NOT NULL,
- PRIMARY KEY (id),
- UNIQUE (fkid, cid, rcid),
- FOREIGN KEY (fkid) REFERENCES mdb_constraints_foreign_key (fkid) ON UPDATE CASCADE,
- FOREIGN KEY (cid) REFERENCES mdb_columns (id),
- FOREIGN KEY (rcid) REFERENCES mdb_columns (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_unique`
- (
- uid BIGINT NOT NULL AUTO_INCREMENT,
- name VARCHAR(255) NOT NULL,
- tid BIGINT NOT NULL,
- position INT NULL,
- PRIMARY KEY (uid),
- FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE
- );
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_unique_columns`
- (
- id BIGINT NOT NULL AUTO_INCREMENT,
- uid BIGINT NOT NULL,
- cid BIGINT NOT NULL,
- PRIMARY KEY (id),
- FOREIGN KEY (uid) REFERENCES mdb_constraints_unique (uid),
- FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_constraints_checks`
- (
- id BIGINT NOT NULL AUTO_INCREMENT,
- tid BIGINT NOT NULL,
- checks VARCHAR(255) NOT NULL,
- PRIMARY KEY (id),
- FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE
- ) WITH SYSTEM VERSIONING;
-
-
- CREATE TABLE IF NOT EXISTS `mdb_concepts`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- uri text not null,
- name VARCHAR(255) null,
- description TEXT null,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (id),
- UNIQUE (uri(200))
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_units`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- uri text not null,
- name VARCHAR(255) null,
- description TEXT null,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (id),
- UNIQUE (uri(200))
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_concepts`
- (
- id bigint NOT NULL,
- cID bigint NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (id, cid),
- FOREIGN KEY (cID) REFERENCES mdb_columns (ID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_columns_units`
- (
- id bigint NOT NULL,
- cID bigint NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (id, cID),
- FOREIGN KEY (cID) REFERENCES mdb_columns (ID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_view`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- vdbid bigint NOT NULL,
- vName VARCHAR(64) NOT NULL,
- internal_name VARCHAR(64) NOT NULL,
- Query TEXT NOT NULL,
- query_hash VARCHAR(255) NOT NULL,
- Public BOOLEAN NOT NULL,
- InitialView BOOLEAN NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- last_modified timestamp,
- created_by character varying(36) NOT NULL,
- PRIMARY KEY (id),
- FOREIGN KEY (vdbid) REFERENCES mdb_databases (id),
- FOREIGN KEY (created_by) REFERENCES mdb_users (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_banner_messages`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- type ENUM ('ERROR', 'WARNING', 'INFO') NOT NULL default 'INFO',
- message TEXT NOT NULL,
- link TEXT NULL,
- link_text VARCHAR(255) NULL,
- display_start timestamp NULL,
- display_end timestamp NULL,
- PRIMARY KEY (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_ontologies`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- prefix VARCHAR(8) NOT NULL,
- uri TEXT NOT NULL,
- uri_pattern TEXT,
- sparql_endpoint TEXT NULL,
- rdf_path TEXT NULL,
- last_modified timestamp,
- created timestamp NOT NULL DEFAULT NOW(),
- UNIQUE (prefix),
- UNIQUE (uri(200)),
- PRIMARY KEY (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_view_columns`
- (
- id BIGINT NOT NULL AUTO_INCREMENT,
- view_id BIGINT NOT NULL,
- dfID BIGINT,
- name VARCHAR(64),
- internal_name VARCHAR(64) NOT NULL,
- column_type ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'),
- ordinal_position INTEGER NOT NULL,
- size BIGINT,
- d BIGINT,
- auto_generated BOOLEAN DEFAULT false,
- is_null_allowed BOOLEAN NOT NULL DEFAULT true,
- PRIMARY KEY (id),
- FOREIGN KEY (view_id) REFERENCES mdb_view (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifiers`
- (
- id BIGINT NOT NULL AUTO_INCREMENT,
- dbid BIGINT NOT NULL,
- qid BIGINT,
- vid BIGINT,
- tid BIGINT,
- publisher VARCHAR(255) NOT NULL,
- language VARCHAR(2),
- publication_year INTEGER NOT NULL,
- publication_month INTEGER,
- publication_day INTEGER,
- identifier_type ENUM ('DATABASE', 'SUBSET', 'VIEW', 'TABLE') NOT NULL,
- status ENUM ('DRAFT', 'PUBLISHED') NOT NULL DEFAULT ('PUBLISHED'),
- query TEXT,
- query_normalized TEXT,
- query_hash VARCHAR(255),
- execution TIMESTAMP,
- result_hash VARCHAR(255),
- result_number BIGINT,
- doi VARCHAR(255),
- created TIMESTAMP NOT NULL DEFAULT NOW(),
- created_by VARCHAR(36) NOT NULL,
- last_modified TIMESTAMP,
- PRIMARY KEY (id), /* must be a single id from persistent identifier concept */
- FOREIGN KEY (dbid) REFERENCES mdb_databases (id),
- FOREIGN KEY (created_by) REFERENCES mdb_users (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifier_licenses`
- (
- pid bigint NOT NULL,
- license_id VARCHAR(255) NOT NULL,
- PRIMARY KEY (pid, license_id),
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id),
- FOREIGN KEY (license_id) REFERENCES mdb_licenses (identifier)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifier_titles`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- pid bigint NOT NULL,
- title text NOT NULL,
- title_type ENUM ('ALTERNATIVE_TITLE', 'SUBTITLE', 'TRANSLATED_TITLE', 'OTHER'),
- language VARCHAR(2),
- PRIMARY KEY (id),
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifier_funders`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- pid bigint NOT NULL,
- funder_name VARCHAR(255) NOT NULL,
- funder_identifier TEXT,
- funder_identifier_type ENUM ('CROSSREF_FUNDER_ID', 'GRID', 'ISNI', 'ROR', 'OTHER'),
- scheme_uri text,
- award_number VARCHAR(255),
- award_title text,
- language VARCHAR(255),
- PRIMARY KEY (id),
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifier_descriptions`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- pid bigint NOT NULL,
- description text NOT NULL,
- description_type ENUM ('ABSTRACT', 'METHODS', 'SERIES_INFORMATION', 'TABLE_OF_CONTENTS', 'TECHNICAL_INFO', 'OTHER'),
- language VARCHAR(2),
- PRIMARY KEY (id),
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_related_identifiers`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- pid bigint NOT NULL,
- value varchar(255) NOT NULL,
- type varchar(255) NOT NULL,
- relation varchar(255) NOT NULL,
- PRIMARY KEY (id), /* must be a single id from persistent identifier concept */
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id),
- UNIQUE (pid, value)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_identifier_creators`
- (
- id bigint NOT NULL AUTO_INCREMENT,
- pid bigint NOT NULL,
- given_names text,
- family_name text,
- creator_name VARCHAR(255) NOT NULL,
- name_type ENUM ('PERSONAL', 'ORGANIZATIONAL') default 'PERSONAL',
- name_identifier text,
- name_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI', 'ORCID'),
- name_identifier_scheme_uri text,
- affiliation VARCHAR(255),
- affiliation_identifier text,
- affiliation_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI'),
- affiliation_identifier_scheme_uri text,
- PRIMARY KEY (id),
- FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_update`
- (
- uUserID character varying(255) NOT NULL,
- uDBID bigint NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (uUserID, uDBID),
- FOREIGN KEY (uDBID) REFERENCES mdb_databases (id)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_access`
- (
- aUserID character varying(255) NOT NULL,
- aDBID bigint REFERENCES mdb_databases (id),
- attime TIMESTAMP,
- download BOOLEAN,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (aUserID, aDBID)
- ) WITH SYSTEM VERSIONING;
-
- CREATE TABLE IF NOT EXISTS `mdb_have_access`
- (
- user_id character varying(36) NOT NULL,
- database_id bigint REFERENCES mdb_databases (id),
- access_type ENUM ('READ', 'WRITE_OWN', 'WRITE_ALL') NOT NULL,
- created timestamp NOT NULL DEFAULT NOW(),
- PRIMARY KEY (user_id, database_id),
- FOREIGN KEY (user_id) REFERENCES mdb_users (id)
- ) WITH SYSTEM VERSIONING;
-
- COMMIT;
- BEGIN;
-
- INSERT INTO `mdb_licenses` (identifier, uri, description)
- VALUES ('CC0-1.0', 'https://creativecommons.org/publicdomain/zero/1.0/legalcode',
- 'CC0 waives copyright interest in a work you''ve created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach.'),
- ('CC-BY-4.0', 'https://creativecommons.org/licenses/by/4.0/legalcode',
- 'The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited.');
-
- INSERT INTO `mdb_images` (name, registry, version, default_port, dialect, driver_class, jdbc_method)
- VALUES ('mariadb', 'docker.io', '11.1.3', 3306, 'org.hibernate.dialect.MariaDBDialect', 'org.mariadb.jdbc.Driver',
- 'mariadb');
-
- INSERT INTO `mdb_images_date` (iid, database_format, unix_format, example, has_time)
- VALUES (1, '%Y-%c-%d %H:%i:%S.%f', 'yyyy-MM-dd HH:mm:ss.SSSSSS', '2022-01-30 13:44:25.499', true),
- (1, '%Y-%c-%d %H:%i:%S', 'yyyy-MM-dd HH:mm:ss', '2022-01-30 13:44:25', true),
- (1, '%Y-%c-%d', 'yyyy-MM-dd', '2022-01-30', false),
- (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true),
- (1, '%d.%c.%Y', 'dd.MM.yyyy', '30.01.2022', false);
-
- INSERT INTO `mdb_ontologies` (prefix, uri, uri_pattern, sparql_endpoint, rdf_path)
- VALUES ('om', 'http://www.ontology-of-units-of-measure.org/resource/om-2/',
- 'http://www.ontology-of-units-of-measure.org/resource/om-2/.*', null, 'rdf/om-2.0.rdf'),
- ('wd', 'http://www.wikidata.org/', 'http://www.wikidata.org/entity/.*', 'https://query.wikidata.org/sparql',
- null),
- ('mo', 'http://purl.org/ontology/mo/', 'http://purl.org/ontology/mo/.*', null, null),
- ('dc', 'http://purl.org/dc/elements/1.1/', null, null, null),
- ('xsd', 'http://www.w3.org/2001/XMLSchema#', null, null, null),
- ('tl', 'http://purl.org/NET/c4dm/timeline.owl#', null, null, null),
- ('foaf', 'http://xmlns.com/foaf/0.1/', null, null, null),
- ('schema', 'http://schema.org/', null, null, null),
- ('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', null, null, null),
- ('rdfs', 'http://www.w3.org/2000/01/rdf-schema#', null, null, null),
- ('owl', 'http://www.w3.org/2002/07/owl#', null, null, null),
- ('prov', 'http://www.w3.org/ns/prov#', null, null, null),
- ('db', 'http://dbpedia.org', 'http://dbpedia.org/ontology/.*', 'http://dbpedia.org/sparql', null);
- COMMIT;
+BEGIN;
+
+CREATE TABLE IF NOT EXISTS `mdb_users`
+(
+ id character varying(36) NOT NULL,
+ username character varying(255) NOT NULL,
+ firstname character varying(255),
+ lastname character varying(255),
+ email character varying(255) NOT NULL,
+ orcid character varying(255),
+ affiliation character varying(255),
+ mariadb_password character varying(255) NOT NULL,
+ theme character varying(255) NOT NULL default ('light'),
+ language character varying(3) NOT NULL default ('en'),
+ PRIMARY KEY (id),
+ UNIQUE (username),
+ UNIQUE (email)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_images`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ registry character varying(255) NOT NULL DEFAULT 'docker.io',
+ name character varying(255) NOT NULL,
+ version character varying(255) NOT NULL,
+ default_port integer NOT NULL,
+ dialect character varying(255) NOT NULL,
+ driver_class character varying(255) NOT NULL,
+ jdbc_method character varying(255) NOT NULL,
+ is_default BOOLEAN NOT NULL DEFAULT FALSE,
+ created timestamp NOT NULL DEFAULT NOW(),
+ last_modified timestamp,
+ PRIMARY KEY (id),
+ UNIQUE (name, version),
+ UNIQUE (is_default)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_images_date`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ iid bigint NOT NULL,
+ database_format character varying(255) NOT NULL,
+ unix_format character varying(255) NOT NULL,
+ example character varying(255) NOT NULL,
+ has_time boolean NOT NULL,
+ created_at timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (id),
+ FOREIGN KEY (iid) REFERENCES mdb_images (id),
+ UNIQUE (database_format, unix_format, example)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_containers`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ internal_name character varying(255) NOT NULL,
+ name character varying(255) NOT NULL,
+ host character varying(255) NOT NULL,
+ port integer NOT NULL default 3306,
+ ui_host character varying(255) NOT NULL default host,
+ ui_port integer NOT NULL default port,
+ ui_additional_flags text,
+ sidecar_host character varying(255),
+ sidecar_port integer,
+ image_id bigint NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ last_modified timestamp,
+ privileged_username character varying(255) NOT NULL,
+ privileged_password character varying(255) NOT NULL,
+ quota integer NOT NULL DEFAULT 50,
+ PRIMARY KEY (id),
+ FOREIGN KEY (image_id) REFERENCES mdb_images (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_data`
+(
+ ID bigint NOT NULL AUTO_INCREMENT,
+ PROVENANCE text,
+ FileEncoding text,
+ FileType character varying(100),
+ Version text,
+ Seperator text,
+ PRIMARY KEY (ID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_licenses`
+(
+ identifier character varying(255) NOT NULL,
+ uri text NOT NULL,
+ description text NOT NULL,
+ PRIMARY KEY (identifier),
+ UNIQUE (uri(200))
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_databases`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ cid bigint NOT NULL,
+ name character varying(255) NOT NULL,
+ internal_name character varying(255) NOT NULL,
+ exchange_name character varying(255) NOT NULL,
+ description text,
+ engine character varying(20),
+ is_public boolean NOT NULL DEFAULT TRUE,
+ image longblob,
+ created_by character varying(36),
+ owned_by character varying(36),
+ contact_person character varying(36),
+ created timestamp NOT NULL DEFAULT NOW(),
+ last_modified timestamp,
+ PRIMARY KEY (id),
+ FOREIGN KEY (cid) REFERENCES mdb_containers (id) /* currently we only support one-to-one */,
+ FOREIGN KEY (created_by) REFERENCES mdb_users (id),
+ FOREIGN KEY (owned_by) REFERENCES mdb_users (id),
+ FOREIGN KEY (contact_person) REFERENCES mdb_users (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_databases_subjects`
+(
+ dbid BIGINT NOT NULL,
+ subjects character varying(255) NOT NULL,
+ PRIMARY KEY (dbid, subjects)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_tables`
+(
+ ID bigint NOT NULL AUTO_INCREMENT,
+ tDBID bigint NOT NULL,
+ tName VARCHAR(64) NOT NULL,
+ internal_name VARCHAR(64) NOT NULL,
+ queue_name VARCHAR(255) NOT NULL,
+ routing_key VARCHAR(255),
+ tDescription VARCHAR(2048),
+ num_rows BIGINT,
+ data_length BIGINT,
+ max_data_length BIGINT,
+ avg_row_length BIGINT,
+ `separator` CHAR(1),
+ quote CHAR(1),
+ element_null VARCHAR(50),
+ skip_lines BIGINT,
+ element_true VARCHAR(50),
+ element_false VARCHAR(50),
+ Version TEXT,
+ created timestamp NOT NULL DEFAULT NOW(),
+ versioned boolean not null default true,
+ created_by character varying(36) NOT NULL,
+ owned_by character varying(36) NOT NULL,
+ last_modified timestamp,
+ PRIMARY KEY (ID),
+ UNIQUE (tDBID, internal_name),
+ FOREIGN KEY (tDBID) REFERENCES mdb_databases (id),
+ FOREIGN KEY (created_by) REFERENCES mdb_users (id),
+ FOREIGN KEY (owned_by) REFERENCES mdb_users (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns`
+(
+ ID BIGINT NOT NULL AUTO_INCREMENT,
+ tID BIGINT NOT NULL,
+ dfID BIGINT,
+ cName VARCHAR(64),
+ internal_name VARCHAR(64) NOT NULL,
+ Datatype ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'),
+ length BIGINT NULL,
+ ordinal_position INTEGER NOT NULL,
+ index_length BIGINT NULL,
+ description VARCHAR(2048),
+ size BIGINT,
+ d BIGINT,
+ auto_generated BOOLEAN DEFAULT false,
+ is_null_allowed BOOLEAN NOT NULL DEFAULT true,
+ val_min NUMERIC NULL,
+ val_max NUMERIC NULL,
+ mean NUMERIC NULL,
+ median NUMERIC NULL,
+ std_dev Numeric NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ last_modified timestamp,
+ PRIMARY KEY (ID),
+ FOREIGN KEY (tID) REFERENCES mdb_tables (ID) ON DELETE CASCADE,
+ UNIQUE (tID, internal_name)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_enums`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ column_id bigint NOT NULL,
+ value CHARACTER VARYING(255) NOT NULL,
+ FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE,
+ PRIMARY KEY (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_sets`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ column_id bigint NOT NULL,
+ value CHARACTER VARYING(255) NOT NULL,
+ FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE,
+ PRIMARY KEY (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_nom`
+(
+ tID bigint,
+ cID bigint,
+ maxlength INTEGER,
+ last_modified timestamp,
+ created timestamp NOT NULL DEFAULT NOW(),
+ FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID),
+ PRIMARY KEY (tID, cID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_cat`
+(
+ tID bigint,
+ cID bigint,
+ num_cat INTEGER,
+ -- cat_array TEXT[],
+ last_modified timestamp,
+ created timestamp NOT NULL DEFAULT NOW(),
+ FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID),
+ PRIMARY KEY (tID, cID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key`
+(
+ fkid BIGINT NOT NULL AUTO_INCREMENT,
+ tid BIGINT NOT NULL,
+ rtid BIGINT NOT NULL,
+ name VARCHAR(255) NOT NULL,
+ on_update VARCHAR(50) NULL,
+ on_delete VARCHAR(50) NULL,
+ position INT NULL,
+ PRIMARY KEY (fkid),
+ FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE,
+ FOREIGN KEY (rtid) REFERENCES mdb_tables (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_primary_key`
+(
+ pkid BIGINT NOT NULL AUTO_INCREMENT,
+ tID BIGINT NOT NULL,
+ cid BIGINT NOT NULL,
+ PRIMARY KEY (pkid),
+ FOREIGN KEY (tID) REFERENCES mdb_tables (id) ON DELETE CASCADE,
+ FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key_reference`
+(
+ id BIGINT NOT NULL AUTO_INCREMENT,
+ fkid BIGINT NOT NULL,
+ cid BIGINT NOT NULL,
+ rcid BIGINT NOT NULL,
+ PRIMARY KEY (id),
+ UNIQUE (fkid, cid, rcid),
+ FOREIGN KEY (fkid) REFERENCES mdb_constraints_foreign_key (fkid) ON UPDATE CASCADE,
+ FOREIGN KEY (cid) REFERENCES mdb_columns (id),
+ FOREIGN KEY (rcid) REFERENCES mdb_columns (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_unique`
+(
+ uid BIGINT NOT NULL AUTO_INCREMENT,
+ name VARCHAR(255) NOT NULL,
+ tid BIGINT NOT NULL,
+ position INT NULL,
+ PRIMARY KEY (uid),
+ FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE
+);
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_unique_columns`
+(
+ id BIGINT NOT NULL AUTO_INCREMENT,
+ uid BIGINT NOT NULL,
+ cid BIGINT NOT NULL,
+ PRIMARY KEY (id),
+ FOREIGN KEY (uid) REFERENCES mdb_constraints_unique (uid),
+ FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_constraints_checks`
+(
+ id BIGINT NOT NULL AUTO_INCREMENT,
+ tid BIGINT NOT NULL,
+ checks VARCHAR(255) NOT NULL,
+ PRIMARY KEY (id),
+ FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE
+) WITH SYSTEM VERSIONING;
+
+
+CREATE TABLE IF NOT EXISTS `mdb_concepts`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ uri text not null,
+ name VARCHAR(255) null,
+ description TEXT null,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (id),
+ UNIQUE (uri(200))
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_units`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ uri text not null,
+ name VARCHAR(255) null,
+ description TEXT null,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (id),
+ UNIQUE (uri(200))
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_concepts`
+(
+ id bigint NOT NULL,
+ cID bigint NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (id, cid),
+ FOREIGN KEY (cID) REFERENCES mdb_columns (ID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_columns_units`
+(
+ id bigint NOT NULL,
+ cID bigint NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (id, cID),
+ FOREIGN KEY (cID) REFERENCES mdb_columns (ID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_view`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ vdbid bigint NOT NULL,
+ vName VARCHAR(64) NOT NULL,
+ internal_name VARCHAR(64) NOT NULL,
+ Query TEXT NOT NULL,
+ query_hash VARCHAR(255) NOT NULL,
+ Public BOOLEAN NOT NULL,
+ InitialView BOOLEAN NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ last_modified timestamp,
+ created_by character varying(36) NOT NULL,
+ PRIMARY KEY (id),
+ FOREIGN KEY (vdbid) REFERENCES mdb_databases (id),
+ FOREIGN KEY (created_by) REFERENCES mdb_users (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_banner_messages`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ type ENUM ('ERROR', 'WARNING', 'INFO') NOT NULL default 'INFO',
+ message TEXT NOT NULL,
+ link TEXT NULL,
+ link_text VARCHAR(255) NULL,
+ display_start timestamp NULL,
+ display_end timestamp NULL,
+ PRIMARY KEY (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_ontologies`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ prefix VARCHAR(8) NOT NULL,
+ uri TEXT NOT NULL,
+ uri_pattern TEXT,
+ sparql_endpoint TEXT NULL,
+ rdf_path TEXT NULL,
+ last_modified timestamp,
+ created timestamp NOT NULL DEFAULT NOW(),
+ UNIQUE (prefix),
+ UNIQUE (uri(200)),
+ PRIMARY KEY (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_view_columns`
+(
+ id BIGINT NOT NULL AUTO_INCREMENT,
+ view_id BIGINT NOT NULL,
+ dfID BIGINT,
+ name VARCHAR(64),
+ internal_name VARCHAR(64) NOT NULL,
+ column_type ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'),
+ ordinal_position INTEGER NOT NULL,
+ size BIGINT,
+ d BIGINT,
+ auto_generated BOOLEAN DEFAULT false,
+ is_null_allowed BOOLEAN NOT NULL DEFAULT true,
+ PRIMARY KEY (id),
+ FOREIGN KEY (view_id) REFERENCES mdb_view (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifiers`
+(
+ id BIGINT NOT NULL AUTO_INCREMENT,
+ dbid BIGINT NOT NULL,
+ qid BIGINT,
+ vid BIGINT,
+ tid BIGINT,
+ publisher VARCHAR(255) NOT NULL,
+ language VARCHAR(2),
+ publication_year INTEGER NOT NULL,
+ publication_month INTEGER,
+ publication_day INTEGER,
+ identifier_type ENUM ('DATABASE', 'SUBSET', 'VIEW', 'TABLE') NOT NULL,
+ status ENUM ('DRAFT', 'PUBLISHED') NOT NULL DEFAULT ('PUBLISHED'),
+ query TEXT,
+ query_normalized TEXT,
+ query_hash VARCHAR(255),
+ execution TIMESTAMP,
+ result_hash VARCHAR(255),
+ result_number BIGINT,
+ doi VARCHAR(255),
+ created TIMESTAMP NOT NULL DEFAULT NOW(),
+ created_by VARCHAR(36) NOT NULL,
+ last_modified TIMESTAMP,
+ PRIMARY KEY (id), /* must be a single id from persistent identifier concept */
+ FOREIGN KEY (dbid) REFERENCES mdb_databases (id),
+ FOREIGN KEY (created_by) REFERENCES mdb_users (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifier_licenses`
+(
+ pid bigint NOT NULL,
+ license_id VARCHAR(255) NOT NULL,
+ PRIMARY KEY (pid, license_id),
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id),
+ FOREIGN KEY (license_id) REFERENCES mdb_licenses (identifier)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifier_titles`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ pid bigint NOT NULL,
+ title text NOT NULL,
+ title_type ENUM ('ALTERNATIVE_TITLE', 'SUBTITLE', 'TRANSLATED_TITLE', 'OTHER'),
+ language VARCHAR(2),
+ PRIMARY KEY (id),
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifier_funders`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ pid bigint NOT NULL,
+ funder_name VARCHAR(255) NOT NULL,
+ funder_identifier TEXT,
+ funder_identifier_type ENUM ('CROSSREF_FUNDER_ID', 'GRID', 'ISNI', 'ROR', 'OTHER'),
+ scheme_uri text,
+ award_number VARCHAR(255),
+ award_title text,
+ language VARCHAR(255),
+ PRIMARY KEY (id),
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifier_descriptions`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ pid bigint NOT NULL,
+ description text NOT NULL,
+ description_type ENUM ('ABSTRACT', 'METHODS', 'SERIES_INFORMATION', 'TABLE_OF_CONTENTS', 'TECHNICAL_INFO', 'OTHER'),
+ language VARCHAR(2),
+ PRIMARY KEY (id),
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_related_identifiers`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ pid bigint NOT NULL,
+ value varchar(255) NOT NULL,
+ type varchar(255) NOT NULL,
+ relation varchar(255) NOT NULL,
+ PRIMARY KEY (id), /* must be a single id from persistent identifier concept */
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id),
+ UNIQUE (pid, value)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_identifier_creators`
+(
+ id bigint NOT NULL AUTO_INCREMENT,
+ pid bigint NOT NULL,
+ given_names text,
+ family_name text,
+ creator_name VARCHAR(255) NOT NULL,
+ name_type ENUM ('PERSONAL', 'ORGANIZATIONAL') default 'PERSONAL',
+ name_identifier text,
+ name_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI', 'ORCID'),
+ name_identifier_scheme_uri text,
+ affiliation VARCHAR(255),
+ affiliation_identifier text,
+ affiliation_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI'),
+ affiliation_identifier_scheme_uri text,
+ PRIMARY KEY (id),
+ FOREIGN KEY (pid) REFERENCES mdb_identifiers (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_update`
+(
+ uUserID character varying(255) NOT NULL,
+ uDBID bigint NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (uUserID, uDBID),
+ FOREIGN KEY (uDBID) REFERENCES mdb_databases (id)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_access`
+(
+ aUserID character varying(255) NOT NULL,
+ aDBID bigint REFERENCES mdb_databases (id),
+ attime TIMESTAMP,
+ download BOOLEAN,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (aUserID, aDBID)
+) WITH SYSTEM VERSIONING;
+
+CREATE TABLE IF NOT EXISTS `mdb_have_access`
+(
+ user_id character varying(36) NOT NULL,
+ database_id bigint REFERENCES mdb_databases (id),
+ access_type ENUM ('READ', 'WRITE_OWN', 'WRITE_ALL') NOT NULL,
+ created timestamp NOT NULL DEFAULT NOW(),
+ PRIMARY KEY (user_id, database_id),
+ FOREIGN KEY (user_id) REFERENCES mdb_users (id)
+) WITH SYSTEM VERSIONING;
+
+COMMIT;
+BEGIN;
+
+INSERT INTO `mdb_licenses` (identifier, uri, description)
+VALUES ('CC0-1.0', 'https://creativecommons.org/publicdomain/zero/1.0/legalcode',
+ 'CC0 waives copyright interest in a work you''ve created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach.'),
+ ('CC-BY-4.0', 'https://creativecommons.org/licenses/by/4.0/legalcode',
+ 'The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited.');
+
+INSERT INTO `mdb_images` (name, registry, version, default_port, dialect, driver_class, jdbc_method)
+VALUES ('mariadb', 'docker.io', '11.1.3', 3306, 'org.hibernate.dialect.MariaDBDialect', 'org.mariadb.jdbc.Driver',
+ 'mariadb');
+
+INSERT INTO `mdb_images_date` (iid, database_format, unix_format, example, has_time)
+VALUES (1, '%Y-%c-%d %H:%i:%S.%f', 'yyyy-MM-dd HH:mm:ss.SSSSSS', '2022-01-30 13:44:25.499', true),
+ (1, '%Y-%c-%d %H:%i:%S', 'yyyy-MM-dd HH:mm:ss', '2022-01-30 13:44:25', true),
+ (1, '%Y-%c-%d', 'yyyy-MM-dd', '2022-01-30', false),
+ (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true),
+ (1, '%d.%c.%Y', 'dd.MM.yyyy', '30.01.2022', false);
+
+INSERT INTO `mdb_ontologies` (prefix, uri, uri_pattern, sparql_endpoint, rdf_path)
+VALUES ('om', 'http://www.ontology-of-units-of-measure.org/resource/om-2/',
+ 'http://www.ontology-of-units-of-measure.org/resource/om-2/.*', null, 'rdf/om-2.0.rdf'),
+ ('wd', 'http://www.wikidata.org/', 'http://www.wikidata.org/entity/.*', 'https://query.wikidata.org/sparql',
+ null),
+ ('mo', 'http://purl.org/ontology/mo/', 'http://purl.org/ontology/mo/.*', null, null),
+ ('dc', 'http://purl.org/dc/elements/1.1/', null, null, null),
+ ('xsd', 'http://www.w3.org/2001/XMLSchema#', null, null, null),
+ ('tl', 'http://purl.org/NET/c4dm/timeline.owl#', null, null, null),
+ ('foaf', 'http://xmlns.com/foaf/0.1/', null, null, null),
+ ('schema', 'http://schema.org/', null, null, null),
+ ('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', null, null, null),
+ ('rdfs', 'http://www.w3.org/2000/01/rdf-schema#', null, null, null),
+ ('owl', 'http://www.w3.org/2002/07/owl#', null, null, null),
+ ('prov', 'http://www.w3.org/ns/prov#', null, null, null),
+ ('db', 'http://dbpedia.org', 'http://dbpedia.org/ontology/.*', 'http://dbpedia.org/sparql', null);
+COMMIT;
diff --git a/dbrepo-metadata-service/api/pom.xml b/dbrepo-metadata-service/api/pom.xml
index 4722e9c3c91fbc07e86af58622d2e3d0cc53de0b..b62bfdc94ad922ffa7b1c8f44e3f1e54d89a2d87 100644
--- a/dbrepo-metadata-service/api/pom.xml
+++ b/dbrepo-metadata-service/api/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-api</artifactId>
<name>dbrepo-metadata-service-api</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies/>
diff --git a/dbrepo-metadata-service/entities/pom.xml b/dbrepo-metadata-service/entities/pom.xml
index 5fc5626e5fb2b3edf42a1c17f1811454a2fc0fdf..2fb8efa9e9f07076e4891377c876658dbb04d146 100644
--- a/dbrepo-metadata-service/entities/pom.xml
+++ b/dbrepo-metadata-service/entities/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-entities</artifactId>
<name>dbrepo-metadata-service-entity</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies/>
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumn.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumn.java
index c869e41637659675e317281fd55092e3b331fc6b..dd59e210033886535cbf6b708175b47dbc0f8341 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumn.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumn.java
@@ -24,7 +24,7 @@ import java.util.List;
@EqualsAndHashCode(onlyExplicitlyIncluded = true)
@EntityListeners(AuditingEntityListener.class)
@jakarta.persistence.Table(name = "mdb_columns", uniqueConstraints = {
- @UniqueConstraint(columnNames = {"tid", "internalName"})
+ @UniqueConstraint(columnNames = {"tID", "internal_name"})
})
@NamedQueries({
@NamedQuery(name = "TableColumn.findAllByDatabaseId", query = "select c from TableColumn c where c.table.database.id = ?1"),
@@ -56,7 +56,7 @@ public class TableColumn implements Comparable<TableColumn> {
@Column(name = "auto_generated", columnDefinition = "BOOLEAN default false")
private Boolean autoGenerated;
- @Column(nullable = false, columnDefinition = "VARCHAR(64)")
+ @Column(name = "internal_name", nullable = false, columnDefinition = "VARCHAR(64)")
private String internalName;
@Column(columnDefinition = "VARCHAR(2048)")
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnConcept.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnConcept.java
index 080abf87cd022f98f3414087d7b24fe94c0cebd7..e53e69f49808946cff5907f8057bde8923afd9b7 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnConcept.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnConcept.java
@@ -50,7 +50,8 @@ public class TableColumnConcept {
private Instant created;
@ToString.Exclude
- @OneToMany(fetch = FetchType.LAZY)
+ @org.springframework.data.annotation.Transient
+ @OneToMany(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinTable(name = "mdb_columns_concepts",
inverseJoinColumns = {
@JoinColumn(name = "cid", referencedColumnName = "id", insertable = false, updatable = false)
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnUnit.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnUnit.java
index 21822c5da764886ef9c675d410cd6d74bbaaf4d2..df3950785e4d8a35ef4f8021bfe3a4c34540fbb2 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnUnit.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/columns/TableColumnUnit.java
@@ -49,7 +49,8 @@ public class TableColumnUnit {
private Instant created;
@ToString.Exclude
- @OneToMany(fetch = FetchType.LAZY)
+ @org.springframework.data.annotation.Transient
+ @OneToMany(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinTable(name = "mdb_columns_units",
inverseJoinColumns = {
@JoinColumn(name = "cid", referencedColumnName = "id", insertable = false, updatable = false)
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/foreignKey/ForeignKeyReference.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/foreignKey/ForeignKeyReference.java
index c63cdd22e6e4ade249ffc41c1305e1d8e7e0c44d..c5f3570099dd5bd12ec641f07e6d2a9f8963b1ce 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/foreignKey/ForeignKeyReference.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/foreignKey/ForeignKeyReference.java
@@ -32,12 +32,14 @@ public class ForeignKeyReference {
@JoinColumn(name = "fkid", referencedColumnName = "fkid", nullable = false)
private ForeignKey foreignKey;
+ @org.springframework.data.annotation.Transient
@ManyToOne(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinColumns({
@JoinColumn(name = "cid", referencedColumnName = "id", nullable = false)
})
private TableColumn column;
+ @org.springframework.data.annotation.Transient
@ManyToOne(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinColumns({
@JoinColumn(name = "rcid", referencedColumnName = "id", nullable = false)
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/primaryKey/PrimaryKey.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/primaryKey/PrimaryKey.java
index c4ccc379c58d88df8bc2ccc0429bd969d0e5c031..aaa1e5fc8f9102c97294d1f9e53624c5fa3b8e45 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/primaryKey/PrimaryKey.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/primaryKey/PrimaryKey.java
@@ -27,7 +27,7 @@ public class PrimaryKey {
@ToString.Exclude
@org.springframework.data.annotation.Transient
- @ManyToOne(fetch = FetchType.LAZY, cascade = CascadeType.MERGE)
+ @ManyToOne(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinColumns({
@JoinColumn(name = "tid", referencedColumnName = "id", nullable = false)
})
@@ -35,7 +35,7 @@ public class PrimaryKey {
@ToString.Exclude
@org.springframework.data.annotation.Transient
- @ManyToOne(fetch = FetchType.LAZY, cascade = CascadeType.MERGE)
+ @ManyToOne(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinColumns({
@JoinColumn(name = "cid", referencedColumnName = "id", nullable = false)
})
diff --git a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/unique/Unique.java b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/unique/Unique.java
index 25ed2eae5d551896b6836cb6bd5c8bdd36724748..c49fc48eb67b6d5ed3689086a1fba4c75e7a1b6c 100644
--- a/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/unique/Unique.java
+++ b/dbrepo-metadata-service/entities/src/main/java/at/tuwien/entities/database/table/constraints/unique/Unique.java
@@ -33,13 +33,14 @@ public class Unique {
@ToString.Exclude
@org.springframework.data.annotation.Transient
- @ManyToOne(fetch = FetchType.LAZY, cascade = CascadeType.MERGE)
+ @ManyToOne(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinColumns({
@JoinColumn(name = "tid", referencedColumnName = "id")
})
private Table table;
- @ManyToMany(fetch = FetchType.LAZY, cascade = CascadeType.MERGE)
+ @org.springframework.data.annotation.Transient
+ @ManyToMany(fetch = FetchType.LAZY, cascade = {CascadeType.MERGE})
@JoinTable(
name = "mdb_constraints_unique_columns",
joinColumns = {
diff --git a/dbrepo-metadata-service/oai/pom.xml b/dbrepo-metadata-service/oai/pom.xml
index c49ff844e9cb921e6eb861e6bfd10f4a25ed822b..5b37750134eb43f3c077ac3c719c94fcad8d6d77 100644
--- a/dbrepo-metadata-service/oai/pom.xml
+++ b/dbrepo-metadata-service/oai/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-oai</artifactId>
<name>dbrepo-metadata-service-oai</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies/>
diff --git a/dbrepo-metadata-service/pom.xml b/dbrepo-metadata-service/pom.xml
index fd44e71dd94659ac965b5819202e7844ffb02291..0fdc80b428c3120888362bed339edbd9097f0ac4 100644
--- a/dbrepo-metadata-service/pom.xml
+++ b/dbrepo-metadata-service/pom.xml
@@ -11,7 +11,7 @@
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
<name>dbrepo-metadata-service</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<description>Service that manages the metadata</description>
diff --git a/dbrepo-metadata-service/report/pom.xml b/dbrepo-metadata-service/report/pom.xml
index b1f3d406e814127927acf3ad675467d615bb453b..6a7874d4e9352a783ca03711ab1e8efe4eabadea 100644
--- a/dbrepo-metadata-service/report/pom.xml
+++ b/dbrepo-metadata-service/report/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-report</artifactId>
<name>dbrepo-metadata-service-report</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/repositories/pom.xml b/dbrepo-metadata-service/repositories/pom.xml
index e80d722a109155e6e78cf4a9e222b11522cf1627..b67917715a5c2e1200e3e14884e45cd1ff60c055 100644
--- a/dbrepo-metadata-service/repositories/pom.xml
+++ b/dbrepo-metadata-service/repositories/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-repositories</artifactId>
<name>dbrepo-metadata-service-repositories</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/repositories/src/main/java/at/tuwien/mapper/MetadataMapper.java b/dbrepo-metadata-service/repositories/src/main/java/at/tuwien/mapper/MetadataMapper.java
index a9b04058e2373f6cb98f8f9cbedb11ba980fdcfc..f6c96f133d31e59bd72214133d5f707d8fdf0468 100644
--- a/dbrepo-metadata-service/repositories/src/main/java/at/tuwien/mapper/MetadataMapper.java
+++ b/dbrepo-metadata-service/repositories/src/main/java/at/tuwien/mapper/MetadataMapper.java
@@ -555,7 +555,6 @@ public interface MetadataMapper {
ref.getColumn().setDatabaseId(table.getTdbid());
ref.getReferencedColumn().setTableId(fk.getReferencedTable().getId());
ref.getReferencedColumn().setDatabaseId(table.getTdbid());
- log.trace("mapped foreign key part ({}) reference ({})", ref.getColumn().getInternalName(), ref.getReferencedColumn().getInternalName());
});
});
table.getConstraints()
diff --git a/dbrepo-metadata-service/rest-service/pom.xml b/dbrepo-metadata-service/rest-service/pom.xml
index c06be275269fbedd04aeea33fe9926abaae09edb..ab556f9c4521be25c046a5777200ce9ab59cfc6b 100644
--- a/dbrepo-metadata-service/rest-service/pom.xml
+++ b/dbrepo-metadata-service/rest-service/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-rest-service</artifactId>
<name>dbrepo-metadata-service-rest</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/services/pom.xml b/dbrepo-metadata-service/services/pom.xml
index 5f0bc0960c21eee8b171addb2bdd240a55b3faf7..bf2105f98da2ff1644bd94493f54f1b5929ea9ce 100644
--- a/dbrepo-metadata-service/services/pom.xml
+++ b/dbrepo-metadata-service/services/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-services</artifactId>
<name>dbrepo-metadata-service-services</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceImpl.java b/dbrepo-metadata-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceImpl.java
index 1c91de7be10e544cfe9b9e5ce71c3af5c3f89e88..0a962f7d6edfe899365534a084a1faa265c6d864 100644
--- a/dbrepo-metadata-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceImpl.java
+++ b/dbrepo-metadata-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceImpl.java
@@ -11,9 +11,11 @@ import at.tuwien.entities.container.Container;
import at.tuwien.entities.database.*;
import at.tuwien.entities.database.table.Table;
import at.tuwien.entities.database.table.columns.TableColumn;
+import at.tuwien.entities.database.table.constraints.Constraints;
import at.tuwien.entities.database.table.constraints.foreignKey.ForeignKey;
import at.tuwien.entities.database.table.constraints.foreignKey.ForeignKeyReference;
import at.tuwien.entities.database.table.constraints.primaryKey.PrimaryKey;
+import at.tuwien.entities.database.table.constraints.unique.Unique;
import at.tuwien.entities.user.User;
import at.tuwien.exception.*;
import at.tuwien.gateway.DataServiceGateway;
@@ -212,12 +214,14 @@ public class DatabaseServiceImpl implements DatabaseService {
.forEach(column -> {
column.setTable(tableEntity);
});
+ log.trace("mapped unique constraint: {} ({})", tableEntity.getName(), uk.getColumns().stream().map(TableColumn::getInternalName).toList());
});
/* map foreign key constraint(s) */
tableEntity.getConstraints()
.getForeignKeys()
.forEach(fk -> {
fk.setTable(tableEntity);
+ log.trace("mapped foreign key constraint: {} ({}) -> {} ({})", fk.getTable().getInternalName(), fk.getReferences().stream().map(r -> r.getColumn().getInternalName()).toList(), fk.getReferencedTable().getInternalName(), fk.getReferences().stream().map(r -> r.getReferencedColumn().getInternalName()).toList());
});
/* map primary key constraint */
for (PrimaryKey key : tableEntity.getConstraints().getPrimaryKey()) {
@@ -237,7 +241,6 @@ public class DatabaseServiceImpl implements DatabaseService {
}
/* update referenced tables after they are known to the service */
for (ForeignKey foreignKey : database.getTables().stream().map(t -> t.getConstraints().getForeignKeys()).flatMap(List::stream).toList()) {
- log.trace("lookup table {} in tables: {}", foreignKey.getReferencedTable().getInternalName(), database.getTables().stream().map(Table::getInternalName).toList());
final Optional<Table> optional = database.getTables()
.stream()
.filter(t -> t.getInternalName().equals(foreignKey.getReferencedTable().getInternalName()))
@@ -275,15 +278,25 @@ public class DatabaseServiceImpl implements DatabaseService {
reference.setReferencedColumn(optional2.get());
}
}
- database.getTables()
- .stream()
- .filter(t -> t.getConstraints().getForeignKeys().size() > 0)
- .map(t -> t.getConstraints().getForeignKeys())
- .flatMap(List::stream)
- .filter(fk -> fk.getReferences().size() > 1)
- .forEach(fk -> {
- log.debug("");
- });
+ /* correct the unique constraint columns */
+ for (Table table : database.getTables()) {
+ for (Unique uniqueConstraint : table.getConstraints().getUniques()) {
+ uniqueConstraint.setColumns(uniqueConstraint.getColumns()
+ .stream()
+ .map(column -> {
+ final Optional<TableColumn> optional = table.getColumns()
+ .stream()
+ .filter(c -> c.getInternalName().equals(column.getInternalName()))
+ .findFirst();
+ if (optional.isEmpty()) {
+ log.error("Failed to find unique constraint column: {}", column.getInternalName());
+ throw new IllegalArgumentException("Failed to find unique constraint column: " + column.getInternalName());
+ }
+ return optional.get();
+ })
+ .toList());
+ }
+ }
/* update in metadata database */
database = databaseRepository.save(database);
/* save in search service */
diff --git a/dbrepo-metadata-service/test/pom.xml b/dbrepo-metadata-service/test/pom.xml
index b7bed994e55bae1797efdd69602e415c275a5062..2c4091eace14d78e0a6323f8960be5ffa6f5cfb0 100644
--- a/dbrepo-metadata-service/test/pom.xml
+++ b/dbrepo-metadata-service/test/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.4.6</version>
+ <version>1.4.5</version>
</parent>
<artifactId>dbrepo-metadata-service-test</artifactId>
<name>dbrepo-metadata-service-test</name>
- <version>1.4.6</version>
+ <version>1.4.5</version>
<dependencies>
<dependency>
diff --git a/dbrepo-search-service/Pipfile b/dbrepo-search-service/Pipfile
index 260236a6ec0d2f08ba3929a45f875dd9cd449e5f..8d6cc6b220d0e6df9219aeca9b7d1ec571c2fde6 100644
--- a/dbrepo-search-service/Pipfile
+++ b/dbrepo-search-service/Pipfile
@@ -18,7 +18,7 @@ jwt = "~=1.3"
testcontainers-opensearch = "*"
pytest = "*"
rdflib = "*"
-dbrepo = {path = "./lib/dbrepo-1.4.6.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.4.5.tar.gz"}
gunicorn = "*"
[dev-packages]
diff --git a/dbrepo-search-service/Pipfile.lock b/dbrepo-search-service/Pipfile.lock
index c8e647e9d94833b85f72bb2dbdf0c6ab2f84db00..b1b91cdc17c61639aa71a02c1f6e1c51800a01c0 100644
--- a/dbrepo-search-service/Pipfile.lock
+++ b/dbrepo-search-service/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "8f7de86e8c15ccfa38b73d7deeec2c48afa5dd59f14a2d61432f5e79989b53cd"
+ "sha256": "f4b77f12b6e64d95ba5e3df0cce6f3eeb8d9cb8e45a6a17b46088d7077d13595"
},
"pipfile-spec": 6,
"requires": {
@@ -18,108 +18,108 @@
"default": {
"aiohappyeyeballs": {
"hashes": [
- "sha256:55a1714f084e63d49639800f95716da97a1f173d46a16dfcfda0016abb93b6b2",
- "sha256:7ce92076e249169a13c2f49320d1967425eaf1f407522d707d59cac7628d62bd"
+ "sha256:4ca893e6c5c1f5bf3888b04cb5a3bee24995398efef6e0b9f747b5e89d84fd74",
+ "sha256:8522691d9a154ba1145b157d6d5c15e5c692527ce6a53c5e5f9876977f6dab2f"
],
"markers": "python_version >= '3.8'",
- "version": "==2.4.0"
+ "version": "==2.4.2"
},
"aiohttp": {
"hashes": [
- "sha256:02594361128f780eecc2a29939d9dfc870e17b45178a867bf61a11b2a4367277",
- "sha256:03f2645adbe17f274444953bdea69f8327e9d278d961d85657cb0d06864814c1",
- "sha256:074d1bff0163e107e97bd48cad9f928fa5a3eb4b9d33366137ffce08a63e37fe",
- "sha256:0912b8a8fadeb32ff67a3ed44249448c20148397c1ed905d5dac185b4ca547bb",
- "sha256:0d277cfb304118079e7044aad0b76685d30ecb86f83a0711fc5fb257ffe832ca",
- "sha256:0d93400c18596b7dc4794d48a63fb361b01a0d8eb39f28800dc900c8fbdaca91",
- "sha256:123dd5b16b75b2962d0fff566effb7a065e33cd4538c1692fb31c3bda2bfb972",
- "sha256:17e997105bd1a260850272bfb50e2a328e029c941c2708170d9d978d5a30ad9a",
- "sha256:18a01eba2574fb9edd5f6e5fb25f66e6ce061da5dab5db75e13fe1558142e0a3",
- "sha256:1923a5c44061bffd5eebeef58cecf68096e35003907d8201a4d0d6f6e387ccaa",
- "sha256:1942244f00baaacaa8155eca94dbd9e8cc7017deb69b75ef67c78e89fdad3c77",
- "sha256:1b2c16a919d936ca87a3c5f0e43af12a89a3ce7ccbce59a2d6784caba945b68b",
- "sha256:1c19de68896747a2aa6257ae4cf6ef59d73917a36a35ee9d0a6f48cff0f94db8",
- "sha256:1e72589da4c90337837fdfe2026ae1952c0f4a6e793adbbfbdd40efed7c63599",
- "sha256:22c0a23a3b3138a6bf76fc553789cb1a703836da86b0f306b6f0dc1617398abc",
- "sha256:2c634a3207a5445be65536d38c13791904fda0748b9eabf908d3fe86a52941cf",
- "sha256:2d21ac12dc943c68135ff858c3a989f2194a709e6e10b4c8977d7fcd67dfd511",
- "sha256:2f1f1c75c395991ce9c94d3e4aa96e5c59c8356a15b1c9231e783865e2772699",
- "sha256:305be5ff2081fa1d283a76113b8df7a14c10d75602a38d9f012935df20731487",
- "sha256:33e6bc4bab477c772a541f76cd91e11ccb6d2efa2b8d7d7883591dfb523e5987",
- "sha256:349ef8a73a7c5665cca65c88ab24abe75447e28aa3bc4c93ea5093474dfdf0ff",
- "sha256:380f926b51b92d02a34119d072f178d80bbda334d1a7e10fa22d467a66e494db",
- "sha256:38172a70005252b6893088c0f5e8a47d173df7cc2b2bd88650957eb84fcf5022",
- "sha256:391cc3a9c1527e424c6865e087897e766a917f15dddb360174a70467572ac6ce",
- "sha256:3a1c32a19ee6bbde02f1cb189e13a71b321256cc1d431196a9f824050b160d5a",
- "sha256:4120d7fefa1e2d8fb6f650b11489710091788de554e2b6f8347c7a20ceb003f5",
- "sha256:424ae21498790e12eb759040bbb504e5e280cab64693d14775c54269fd1d2bb7",
- "sha256:44b324a6b8376a23e6ba25d368726ee3bc281e6ab306db80b5819999c737d820",
- "sha256:4790f0e15f00058f7599dab2b206d3049d7ac464dc2e5eae0e93fa18aee9e7bf",
- "sha256:4aff049b5e629ef9b3e9e617fa6e2dfeda1bf87e01bcfecaf3949af9e210105e",
- "sha256:4b38b1570242fbab8d86a84128fb5b5234a2f70c2e32f3070143a6d94bc854cf",
- "sha256:4d46c7b4173415d8e583045fbc4daa48b40e31b19ce595b8d92cf639396c15d5",
- "sha256:4f1c9866ccf48a6df2b06823e6ae80573529f2af3a0992ec4fe75b1a510df8a6",
- "sha256:4f7acae3cf1a2a2361ec4c8e787eaaa86a94171d2417aae53c0cca6ca3118ff6",
- "sha256:54d9ddea424cd19d3ff6128601a4a4d23d54a421f9b4c0fff740505813739a91",
- "sha256:58718e181c56a3c02d25b09d4115eb02aafe1a732ce5714ab70326d9776457c3",
- "sha256:5ede29d91a40ba22ac1b922ef510aab871652f6c88ef60b9dcdf773c6d32ad7a",
- "sha256:61645818edd40cc6f455b851277a21bf420ce347baa0b86eaa41d51ef58ba23d",
- "sha256:66bf9234e08fe561dccd62083bf67400bdbf1c67ba9efdc3dac03650e97c6088",
- "sha256:673f988370f5954df96cc31fd99c7312a3af0a97f09e407399f61583f30da9bc",
- "sha256:676f94c5480d8eefd97c0c7e3953315e4d8c2b71f3b49539beb2aa676c58272f",
- "sha256:6c225286f2b13bab5987425558baa5cbdb2bc925b2998038fa028245ef421e75",
- "sha256:7384d0b87d4635ec38db9263e6a3f1eb609e2e06087f0aa7f63b76833737b471",
- "sha256:7e2fe37ac654032db1f3499fe56e77190282534810e2a8e833141a021faaab0e",
- "sha256:7f2bfc0032a00405d4af2ba27f3c429e851d04fad1e5ceee4080a1c570476697",
- "sha256:7f6b639c36734eaa80a6c152a238242bedcee9b953f23bb887e9102976343092",
- "sha256:814375093edae5f1cb31e3407997cf3eacefb9010f96df10d64829362ae2df69",
- "sha256:8224f98be68a84b19f48e0bdc14224b5a71339aff3a27df69989fa47d01296f3",
- "sha256:898715cf566ec2869d5cb4d5fb4be408964704c46c96b4be267442d265390f32",
- "sha256:8989f46f3d7ef79585e98fa991e6ded55d2f48ae56d2c9fa5e491a6e4effb589",
- "sha256:8ba01ebc6175e1e6b7275c907a3a36be48a2d487549b656aa90c8a910d9f3178",
- "sha256:8c5c6fa16412b35999320f5c9690c0f554392dc222c04e559217e0f9ae244b92",
- "sha256:8c6a4e5e40156d72a40241a25cc226051c0a8d816610097a8e8f517aeacd59a2",
- "sha256:8eaf44ccbc4e35762683078b72bf293f476561d8b68ec8a64f98cf32811c323e",
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],
"markers": "python_version >= '3.8'",
- "version": "==3.10.5"
+ "version": "==3.10.8"
},
"aiosignal": {
"hashes": [
@@ -373,10 +373,11 @@
},
"dbrepo": {
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],
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- "path": "./lib/dbrepo-1.4.6.tar.gz"
+ "path": "./lib/dbrepo-1.4.5.tar.gz"
},
"docker": {
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@@ -527,75 +528,82 @@
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+ "sha256:c4aab7f6381f38a4b42f269057aee279ab0fc7bf2e929e3d4abfae97b682a12c",
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+ "sha256:d5e975ca70269d66d17dd995dafc06f1b06e8cb1ec1e9ed54c1d1e4a7c4cf26e",
+ "sha256:da7a9bff22ce038e19bf62c4dd1ec8391062878710ded0a845bcf47cc0200617",
+ "sha256:db32b5348615a04b82240cc67983cb315309e88d444a288934ee6ceaebcad6cc",
+ "sha256:dcc62f31eae24de7f8dce72134c8651c58000d3b1868e01392baea7c32c247de",
+ "sha256:dfc59d69fc48664bc693842bd57acfdd490acafda1ab52c7836e3fc75c90a111",
+ "sha256:e347b3bfcf985a05e8c0b7d462ba6f15b1ee1c909e2dcad795e49e91b152c383",
+ "sha256:e4d333e558953648ca09d64f13e6d8f0523fa705f51cae3f03b5983489958c70",
+ "sha256:ed10eac5830befbdd0c32f83e8aa6288361597550ba669b04c48f0f9a2c843c6",
+ "sha256:efc0f674aa41b92da8c49e0346318c6075d734994c3c4e4430b1c3f853e498e4",
+ "sha256:f1695e76146579f8c06c1509c7ce4dfe0706f49c6831a817ac04eebb2fd02011",
+ "sha256:f1d4aeb8891338e60d1ab6127af1fe45def5259def8094b9c7e34690c8858803",
+ "sha256:f406b22b7c9a9b4f8aa9d2ab13d6ae0ac3e85c9a809bd590ad53fed2bf70dc79",
+ "sha256:f6ff3b14f2df4c41660a7dec01045a045653998784bf8cfcb5a525bdffffbc8f"
],
"markers": "python_version < '3.13' and platform_machine == 'aarch64' or (platform_machine == 'ppc64le' or (platform_machine == 'x86_64' or (platform_machine == 'amd64' or (platform_machine == 'AMD64' or (platform_machine == 'win32' or platform_machine == 'WIN32')))))",
- "version": "==3.1.0"
+ "version": "==3.1.1"
},
"gunicorn": {
"hashes": [
@@ -608,11 +616,11 @@
},
"idna": {
"hashes": [
- "sha256:050b4e5baadcd44d760cedbd2b8e639f2ff89bbc7a5730fcc662954303377aac",
- "sha256:d838c2c0ed6fced7693d5e8ab8e734d5f8fda53a039c0164afb0b82e771e3603"
+ "sha256:12f65c9b470abda6dc35cf8e63cc574b1c52b11df2c86030af0ac09b01b13ea9",
+ "sha256:946d195a0d259cbba61165e88e65941f16e9b36ea6ddb97f00452bae8b1287d3"
],
"markers": "python_version >= '3.6'",
- "version": "==3.8"
+ "version": "==3.10"
},
"iniconfig": {
"hashes": [
@@ -919,38 +927,51 @@
},
"pandas": {
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+ "sha256:cd8d0c3be0515c12fed0bdbae072551c8b54b7192c7b1fda0ba56059a0179698",
+ "sha256:d9c45366def9a3dd85a6454c0e7908f2b3b8e9c138f5dc38fed7ce720d8453ed",
+ "sha256:f00d1345d84d8c86a63e476bb4955e46458b304b9575dcf71102b5c705320015",
+ "sha256:f3a255b2c19987fbbe62a9dfd6cff7ff2aa9ccab3fc75218fd4b7530f01efa24",
+ "sha256:fffb8ae78d8af97f849404f21411c95062db1496aeb3e56f146f0355c9989319"
],
"markers": "python_version >= '3.9'",
- "version": "==2.2.2"
+ "version": "==2.2.3"
},
"pika": {
"hashes": [
@@ -970,11 +991,11 @@
},
"prometheus-client": {
"hashes": [
- "sha256:287629d00b147a32dcb2be0b9df905da599b2d82f80377083ec8463309a4bb89",
- "sha256:cde524a85bce83ca359cc837f28b8c0db5cac7aa653a588fd7e84ba061c329e7"
+ "sha256:4fa6b4dd0ac16d58bb587c04b1caae65b8c5043e85f778f42f5f632f6af2e166",
+ "sha256:96c83c606b71ff2b0a433c98889d275f51ffec6c5e267de37c7a2b5c9aa9233e"
],
"markers": "python_version >= '3.8'",
- "version": "==0.20.0"
+ "version": "==0.21.0"
},
"prometheus-flask-exporter": {
"hashes": [
@@ -994,106 +1015,106 @@
},
"pydantic": {
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- "sha256:1363c7d975c7036df0db2b4a61f2e062fbc0aa5ab5f2772e0ffc7191a4f4bce2",
- "sha256:7aff4db5fdf3cf573d4b3c30926a510a10e19a0774d38fc4967f78beb6deb612"
+ "sha256:d155cef71265d1e9807ed1c32b4c8deec042a44a50a4188b25ac67ecd81a9c0f",
+ "sha256:f048cec7b26778210e28a0459867920654d48e5e62db0958433636cde4254f12"
],
"markers": "python_version >= '3.8'",
- "version": "==2.9.1"
+ "version": "==2.9.2"
},
"pydantic-core": {
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+ "sha256:d0776dea117cf5272382634bd2a5c1b6eb16767c223c6a5317cd3e2a757c61a0",
+ "sha256:d18ca8148bebe1b0a382a27a8ee60350091a6ddaf475fa05ef50dc35b5df6327",
+ "sha256:d4488a93b071c04dc20f5cecc3631fc78b9789dd72483ba15d423b5b3689b555",
+ "sha256:d5f7a395a8cf1621939692dba2a6b6a830efa6b3cee787d82c7de1ad2930de64",
+ "sha256:d7a80d21d613eec45e3d41eb22f8f94ddc758a6c4720842dc74c0581f54993d6",
+ "sha256:d97683ddee4723ae8c95d1eddac7c192e8c552da0c73a925a89fa8649bf13eea",
+ "sha256:dcedcd19a557e182628afa1d553c3895a9f825b936415d0dbd3cd0bbcfd29b4b",
+ "sha256:de6d1d1b9e5101508cb37ab0d972357cac5235f5c6533d1071964c47139257df",
+ "sha256:df49e7a0861a8c36d089c1ed57d308623d60416dab2647a4a17fe050ba85de0e",
+ "sha256:df933278128ea1cd77772673c73954e53a1c95a4fdf41eef97c2b779271bd0bd",
+ "sha256:e08277a400de01bc72436a0ccd02bdf596631411f592ad985dcee21445bd0068",
+ "sha256:e38e63e6f3d1cec5a27e0afe90a085af8b6806ee208b33030e65b6516353f1a3",
+ "sha256:e55541f756f9b3ee346b840103f32779c695a19826a4c442b7954550a0972040",
+ "sha256:ec4e55f79b1c4ffb2eecd8a0cfba9955a2588497d96851f4c8f99aa4a1d39b12",
+ "sha256:ed1a53de42fbe34853ba90513cea21673481cd81ed1be739f7f2efb931b24916",
+ "sha256:ed541d70698978a20eb63d8c5d72f2cc6d7079d9d90f6b50bad07826f1320f5f",
+ "sha256:f09e2ff1f17c2b51f2bc76d1cc33da96298f0a036a137f5440ab3ec5360b624f",
+ "sha256:f220b0eea5965dec25480b6333c788fb72ce5f9129e8759ef876a1d805d00801",
+ "sha256:f3e0da4ebaef65158d4dfd7d3678aad692f7666877df0002b8a522cdf088f231",
+ "sha256:f455ee30a9d61d3e1a15abd5068827773d6e4dc513e795f380cdd59932c782d5",
+ "sha256:f5ef8f42bec47f21d07668a043f077d507e5bf4e668d5c6dfe6aaba89de1a5b8",
+ "sha256:f69a8e0b033b747bb3e36a44e7732f0c99f7edd5cea723d45bc0d6e95377ffee",
+ "sha256:ff02b6d461a6de369f07ec15e465a88895f3223eb75073ffea56b84d9331f607"
],
"markers": "python_version >= '3.8'",
- "version": "==2.23.3"
+ "version": "==2.23.4"
},
"pyjwt": {
"hashes": [
@@ -1347,58 +1368,58 @@
},
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],
"markers": "python_version >= '3.7'",
- "version": "==2.0.34"
+ "version": "==2.0.35"
},
"sqlalchemy-utils": {
"hashes": [
@@ -1450,11 +1471,11 @@
},
"tzdata": {
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- "sha256:9068bc196136463f5245e51efda838afa15aaeca9903f49050dfa2679db4d252"
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+ "sha256:a48093786cdcde33cad18c2555e8532f34422074448fbc874186f0abd79565cd"
],
"markers": "python_version >= '2'",
- "version": "==2024.1"
+ "version": "==2024.2"
},
"urllib3": {
"hashes": [
@@ -1550,101 +1571,101 @@
},
"yarl": {
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- "sha256:e8f63904df26d1a66aabc141bfd258bf738b9bc7bc6bdef22713b4f5ef789a4c",
- "sha256:f3a6d90cab0bdf07df8f176eae3a07127daafcf7457b997b2bf46776da2c7eb7",
- "sha256:f41fa79114a1d2eddb5eea7b912d6160508f57440bd302ce96eaa384914cd265",
- "sha256:f46f81501160c28d0c0b7333b4f7be8983dbbc161983b6fb814024d1b4952f79",
- "sha256:f61db3b7e870914dbd9434b560075e0366771eecbe6d2b5561f5bc7485f39efd"
+ "sha256:08d7148ff11cb8e886d86dadbfd2e466a76d5dd38c7ea8ebd9b0e07946e76e4b",
+ "sha256:098b870c18f1341786f290b4d699504e18f1cd050ed179af8123fd8232513424",
+ "sha256:11b3ca8b42a024513adce810385fcabdd682772411d95bbbda3b9ed1a4257644",
+ "sha256:1891d69a6ba16e89473909665cd355d783a8a31bc84720902c5911dbb6373465",
+ "sha256:1bbb418f46c7f7355084833051701b2301092e4611d9e392360c3ba2e3e69f88",
+ "sha256:1d0828e17fa701b557c6eaed5edbd9098eb62d8838344486248489ff233998b8",
+ "sha256:1d8e3ca29f643dd121f264a7c89f329f0fcb2e4461833f02de6e39fef80f89da",
+ "sha256:1fa56f34b2236f5192cb5fceba7bbb09620e5337e0b6dfe2ea0ddbd19dd5b154",
+ "sha256:216a6785f296169ed52cd7dcdc2612f82c20f8c9634bf7446327f50398732a51",
+ "sha256:22b739f99c7e4787922903f27a892744189482125cc7b95b747f04dd5c83aa9f",
+ "sha256:2430cf996113abe5aee387d39ee19529327205cda975d2b82c0e7e96e5fdabdc",
+ "sha256:269c201bbc01d2cbba5b86997a1e0f73ba5e2f471cfa6e226bcaa7fd664b598d",
+ "sha256:298c1eecfd3257aa16c0cb0bdffb54411e3e831351cd69e6b0739be16b1bdaa8",
+ "sha256:2a93a4557f7fc74a38ca5a404abb443a242217b91cd0c4840b1ebedaad8919d4",
+ "sha256:2b2442a415a5f4c55ced0fade7b72123210d579f7d950e0b5527fc598866e62c",
+ "sha256:2db874dd1d22d4c2c657807562411ffdfabec38ce4c5ce48b4c654be552759dc",
+ "sha256:309c104ecf67626c033845b860d31594a41343766a46fa58c3309c538a1e22b2",
+ "sha256:31497aefd68036d8e31bfbacef915826ca2e741dbb97a8d6c7eac66deda3b606",
+ "sha256:373f16f38721c680316a6a00ae21cc178e3a8ef43c0227f88356a24c5193abd6",
+ "sha256:396e59b8de7e4d59ff5507fb4322d2329865b909f29a7ed7ca37e63ade7f835c",
+ "sha256:3bb83a0f12701c0b91112a11148b5217617982e1e466069d0555be9b372f2734",
+ "sha256:3de86547c820e4f4da4606d1c8ab5765dd633189791f15247706a2eeabc783ae",
+ "sha256:3fdbf0418489525231723cdb6c79e7738b3cbacbaed2b750cb033e4ea208f220",
+ "sha256:40c6e73c03a6befb85b72da213638b8aaa80fe4136ec8691560cf98b11b8ae6e",
+ "sha256:44a4c40a6f84e4d5955b63462a0e2a988f8982fba245cf885ce3be7618f6aa7d",
+ "sha256:44b07e1690f010c3c01d353b5790ec73b2f59b4eae5b0000593199766b3f7a5c",
+ "sha256:45d23c4668d4925688e2ea251b53f36a498e9ea860913ce43b52d9605d3d8177",
+ "sha256:45f209fb4bbfe8630e3d2e2052535ca5b53d4ce2d2026bed4d0637b0416830da",
+ "sha256:4afdf84610ca44dcffe8b6c22c68f309aff96be55f5ea2fa31c0c225d6b83e23",
+ "sha256:4feaaa4742517eaceafcbe74595ed335a494c84634d33961214b278126ec1485",
+ "sha256:576365c9f7469e1f6124d67b001639b77113cfd05e85ce0310f5f318fd02fe85",
+ "sha256:5820bd4178e6a639b3ef1db8b18500a82ceab6d8b89309e121a6859f56585b05",
+ "sha256:5989a38ba1281e43e4663931a53fbf356f78a0325251fd6af09dd03b1d676a09",
+ "sha256:5a9bacedbb99685a75ad033fd4de37129449e69808e50e08034034c0bf063f99",
+ "sha256:5b66c87da3c6da8f8e8b648878903ca54589038a0b1e08dde2c86d9cd92d4ac9",
+ "sha256:5c5e32fef09ce101fe14acd0f498232b5710effe13abac14cd95de9c274e689e",
+ "sha256:658e8449b84b92a4373f99305de042b6bd0d19bf2080c093881e0516557474a5",
+ "sha256:6a2acde25be0cf9be23a8f6cbd31734536a264723fca860af3ae5e89d771cd71",
+ "sha256:6a5185ad722ab4dd52d5fb1f30dcc73282eb1ed494906a92d1a228d3f89607b0",
+ "sha256:6b7f6e699304717fdc265a7e1922561b02a93ceffdaefdc877acaf9b9f3080b8",
+ "sha256:703b0f584fcf157ef87816a3c0ff868e8c9f3c370009a8b23b56255885528f10",
+ "sha256:7055bbade838d68af73aea13f8c86588e4bcc00c2235b4b6d6edb0dbd174e246",
+ "sha256:78f271722423b2d4851cf1f4fa1a1c4833a128d020062721ba35e1a87154a049",
+ "sha256:7addd26594e588503bdef03908fc207206adac5bd90b6d4bc3e3cf33a829f57d",
+ "sha256:81bad32c8f8b5897c909bf3468bf601f1b855d12f53b6af0271963ee67fff0d2",
+ "sha256:82e692fb325013a18a5b73a4fed5a1edaa7c58144dc67ad9ef3d604eccd451ad",
+ "sha256:84bbcdcf393139f0abc9f642bf03f00cac31010f3034faa03224a9ef0bb74323",
+ "sha256:86c438ce920e089c8c2388c7dcc8ab30dfe13c09b8af3d306bcabb46a053d6f7",
+ "sha256:8be8cdfe20787e6a5fcbd010f8066227e2bb9058331a4eccddec6c0db2bb85b2",
+ "sha256:8c723c91c94a3bc8033dd2696a0f53e5d5f8496186013167bddc3fb5d9df46a3",
+ "sha256:8ca53632007c69ddcdefe1e8cbc3920dd88825e618153795b57e6ebcc92e752a",
+ "sha256:8f722f30366474a99745533cc4015b1781ee54b08de73260b2bbe13316079851",
+ "sha256:942c80a832a79c3707cca46bd12ab8aa58fddb34b1626d42b05aa8f0bcefc206",
+ "sha256:94a993f976cdcb2dc1b855d8b89b792893220db8862d1a619efa7451817c836b",
+ "sha256:95c6737f28069153c399d875317f226bbdea939fd48a6349a3b03da6829fb550",
+ "sha256:9915300fe5a0aa663c01363db37e4ae8e7c15996ebe2c6cce995e7033ff6457f",
+ "sha256:9a18595e6a2ee0826bf7dfdee823b6ab55c9b70e8f80f8b77c37e694288f5de1",
+ "sha256:9c8854b9f80693d20cec797d8e48a848c2fb273eb6f2587b57763ccba3f3bd4b",
+ "sha256:9cec42a20eae8bebf81e9ce23fb0d0c729fc54cf00643eb251ce7c0215ad49fe",
+ "sha256:9d2e1626be8712333a9f71270366f4a132f476ffbe83b689dd6dc0d114796c74",
+ "sha256:9d74f3c335cfe9c21ea78988e67f18eb9822f5d31f88b41aec3a1ec5ecd32da5",
+ "sha256:9fb4134cc6e005b99fa29dbc86f1ea0a298440ab6b07c6b3ee09232a3b48f495",
+ "sha256:a0ae6637b173d0c40b9c1462e12a7a2000a71a3258fa88756a34c7d38926911c",
+ "sha256:a31d21089894942f7d9a8df166b495101b7258ff11ae0abec58e32daf8088813",
+ "sha256:a3442c31c11088e462d44a644a454d48110f0588de830921fd201060ff19612a",
+ "sha256:ab9524e45ee809a083338a749af3b53cc7efec458c3ad084361c1dbf7aaf82a2",
+ "sha256:b1481c048fe787f65e34cb06f7d6824376d5d99f1231eae4778bbe5c3831076d",
+ "sha256:b8c837ab90c455f3ea8e68bee143472ee87828bff19ba19776e16ff961425b57",
+ "sha256:bbf2c3f04ff50f16404ce70f822cdc59760e5e2d7965905f0e700270feb2bbfc",
+ "sha256:bbf9c2a589be7414ac4a534d54e4517d03f1cbb142c0041191b729c2fa23f320",
+ "sha256:bcd5bf4132e6a8d3eb54b8d56885f3d3a38ecd7ecae8426ecf7d9673b270de43",
+ "sha256:c14c16831b565707149c742d87a6203eb5597f4329278446d5c0ae7a1a43928e",
+ "sha256:c49f3e379177f4477f929097f7ed4b0622a586b0aa40c07ac8c0f8e40659a1ac",
+ "sha256:c92b89bffc660f1274779cb6fbb290ec1f90d6dfe14492523a0667f10170de26",
+ "sha256:cd66152561632ed4b2a9192e7f8e5a1d41e28f58120b4761622e0355f0fe034c",
+ "sha256:cf1ad338620249f8dd6d4b6a91a69d1f265387df3697ad5dc996305cf6c26fb2",
+ "sha256:d07b52c8c450f9366c34aa205754355e933922c79135125541daae6cbf31c799",
+ "sha256:d0d12fe78dcf60efa205e9a63f395b5d343e801cf31e5e1dda0d2c1fb618073d",
+ "sha256:d4ee1d240b84e2f213565f0ec08caef27a0e657d4c42859809155cf3a29d1735",
+ "sha256:d959fe96e5c2712c1876d69af0507d98f0b0e8d81bee14cfb3f6737470205419",
+ "sha256:dcaef817e13eafa547cdfdc5284fe77970b891f731266545aae08d6cce52161e",
+ "sha256:df4e82e68f43a07735ae70a2d84c0353e58e20add20ec0af611f32cd5ba43fb4",
+ "sha256:ec8cfe2295f3e5e44c51f57272afbd69414ae629ec7c6b27f5a410efc78b70a0",
+ "sha256:ec9dd328016d8d25702a24ee274932aebf6be9787ed1c28d021945d264235b3c",
+ "sha256:ef9b85fa1bc91c4db24407e7c4da93a5822a73dd4513d67b454ca7064e8dc6a3",
+ "sha256:f3bf60444269345d712838bb11cc4eadaf51ff1a364ae39ce87a5ca8ad3bb2c8",
+ "sha256:f452cc1436151387d3d50533523291d5f77c6bc7913c116eb985304abdbd9ec9",
+ "sha256:f7917697bcaa3bc3e83db91aa3a0e448bf5cde43c84b7fc1ae2427d2417c0224",
+ "sha256:f90575e9fe3aae2c1e686393a9689c724cd00045275407f71771ae5d690ccf38",
+ "sha256:fb382fd7b4377363cc9f13ba7c819c3c78ed97c36a82f16f3f92f108c787cbbf",
+ "sha256:fb9f59f3848edf186a76446eb8bcf4c900fe147cb756fbbd730ef43b2e67c6a7",
+ "sha256:fc2931ac9ce9c61c9968989ec831d3a5e6fcaaff9474e7cfa8de80b7aff5a093"
],
"markers": "python_version >= '3.8'",
- "version": "==1.11.1"
+ "version": "==1.13.1"
}
},
"develop": {
diff --git a/dbrepo-search-service/app.py b/dbrepo-search-service/app.py
index d668bfae419cfd43ea13a14987e116d99d54b592..f8d7856c9b7f7c60cf9769e3ade9f800640f0b9f 100644
--- a/dbrepo-search-service/app.py
+++ b/dbrepo-search-service/app.py
@@ -165,7 +165,7 @@ template = {
"info": {
"title": "Database Repository Search Service API",
"description": "Service that searches the search database",
- "version": "1.4.6",
+ "version": "1.4.5",
"contact": {
"name": "Prof. Andreas Rauber",
"email": "andreas.rauber@tuwien.ac.at"
@@ -177,7 +177,7 @@ template = {
},
"externalDocs": {
"description": "Sourcecode Documentation",
- "url": "https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/"
+ "url": "https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/"
},
"servers": [
{
diff --git a/helm/dbrepo/Chart.lock b/helm/dbrepo/Chart.lock
index a7db225a0715d49501237bdba216941faed2d41c..c47054b53927a04542b186013011f6296bda1371 100644
--- a/helm/dbrepo/Chart.lock
+++ b/helm/dbrepo/Chart.lock
@@ -7,7 +7,7 @@ dependencies:
version: 21.6.1
- name: dbrepo-mariadb-galera
repository: file://../dbrepo-mariadb-galera
- version: 1.4.6
+ version: 1.4.5
- name: mariadb-galera
repository: https://charts.bitnami.com/bitnami
version: 10.1.3
diff --git a/helm/dbrepo/Chart.yaml b/helm/dbrepo/Chart.yaml
index bf69c2237fbb3101631b80244a769a5031507e79..69a78611ced3c365660e21b227f092bda9b5a250 100644
--- a/helm/dbrepo/Chart.yaml
+++ b/helm/dbrepo/Chart.yaml
@@ -6,8 +6,8 @@ description: Helm Chart for installing DBRepo
sources:
- https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services
type: application
-version: "1.4.6"
-appVersion: "1.4.6"
+version: "1.4.5"
+appVersion: "1.4.5"
keywords:
- dbrepo
maintainers:
@@ -28,7 +28,7 @@ dependencies:
condition: authservice.enabled
- name: dbrepo-mariadb-galera
alias: datadb
- version: 1.4.6
+ version: 1.4.5
repository: file://../dbrepo-mariadb-galera
condition: datadb.enabled
- name: mariadb-galera
diff --git a/helm/dbrepo/templates/metadata-configmap.yaml b/helm/dbrepo/templates/metadata-configmap.yaml
index 93919ed2a11a70442a643f7348bfca22a58f8890..5e58101ed9fd99cdbbd7b4881a7f210234f96d6f 100644
--- a/helm/dbrepo/templates/metadata-configmap.yaml
+++ b/helm/dbrepo/templates/metadata-configmap.yaml
@@ -193,8 +193,9 @@ data:
std_dev Numeric NULL,
created timestamp NOT NULL DEFAULT NOW(),
last_modified timestamp,
+ PRIMARY KEY (ID),
FOREIGN KEY (tID) REFERENCES mdb_tables (ID) ON DELETE CASCADE,
- PRIMARY KEY (ID)
+ UNIQUE (tID, internal_name)
) WITH SYSTEM VERSIONING;
CREATE TABLE IF NOT EXISTS `mdb_columns_enums`
diff --git a/helm/dbrepo/values.yaml b/helm/dbrepo/values.yaml
index 82d75c66c7ccdac892c8f7a3e68df3af328e295e..8542643b1d3932ca444c7af3e54b52d412f27458 100644
--- a/helm/dbrepo/values.yaml
+++ b/helm/dbrepo/values.yaml
@@ -281,7 +281,7 @@ analyseservice:
enabled: true
image:
## @skip analyseservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.4.5
## @skip analyseservice.image.pullPolicy
pullPolicy: Always
## @param analyseservice.image.debug Set the logging level to `trace`. Otherwise, set to `info`.
@@ -343,7 +343,7 @@ metadataservice:
enabled: true
image:
## @skip metadataservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.4.5
## @skip metadataservice.image.pullPolicy
pullPolicy: Always
## @param metadataservice.image.debug Set the logging level to `trace`. Otherwise, set to `info`.
@@ -442,7 +442,7 @@ dataservice:
endpoint: http://data-service
image:
## @skip dataservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.4.5
## @skip dataservice.image.pullPolicy
pullPolicy: Always
## @param dataservice.image.debug Set the logging level to `trace`. Otherwise, set to `info`.
@@ -529,7 +529,7 @@ searchservice:
endpoint: http://search-service
image:
## @skip searchservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.4.5
## @skip searchservice.image.pullPolicy
pullPolicy: Always
## @param searchservice.image.debug Set the logging level to `trace`. Otherwise, set to `info`.
@@ -578,7 +578,7 @@ searchservice:
## @skip searchservice.init
init:
image:
- name: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.4.5
pullPolicy: Always
## @param searchservice.replicaCount The number of replicas.
replicaCount: 2
@@ -626,7 +626,7 @@ storageservice:
adminSecretAccessKey: seaweedfsadmin
## @skip storageservice.init
init:
- image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.4.6
+ image: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.4.5
pullPolicy: Always
## @section Identity Service
@@ -689,7 +689,7 @@ ui:
enabled: true
image:
## @skip ui.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.6
+ name: registry.datalab.tuwien.ac.at/dbrepo/ui:1.4.5
## @skip ui.image.pullPolicy
pullPolicy: Always
## @param ui.image.debug Set the logging level to `trace`. Otherwise, set to `info`.
diff --git a/install.sh b/install.sh
index a59965816bd2200960b407a53aacbd3e0b879b0d..c261d24ab8b7d7d01640c5eb25f3e297ab4e882d 100644
--- a/install.sh
+++ b/install.sh
@@ -1,7 +1,7 @@
#!/bin/bash
# preset
-VERSION="1.4.6"
+VERSION="1.4.5"
MIN_CPU=8
MIN_RAM=4
MIN_MAP_COUNT=262144
diff --git a/lib/python/README.md b/lib/python/README.md
index d3db052010c3088ee203159f840c01cee6041cff..96166554a7f5cf5a1c3cb1d3fa76650f970eb8bf 100644
--- a/lib/python/README.md
+++ b/lib/python/README.md
@@ -48,17 +48,17 @@ client.import_table_data(database_id=7, table_id=13, file_name_or_data_frame=df)
## Supported Features & Best-Practices
- Manage user
- account ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/#create-user-account))
+ account ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/#create-user-account))
- Manage
databases ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo//usage-overview/#create-database))
- Manage database access &
- visibility ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/#create-database))
+ visibility ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/#create-database))
- Import
- dataset ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/#import-dataset))
+ dataset ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/#import-dataset))
- Create persistent
- identifiers ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/#assign-database-pid))
+ identifiers ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/#assign-database-pid))
- Execute
- queries ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/#export-subset))
+ queries ([docs](https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/#export-subset))
- Get data from tables/views/subsets
## Configure
diff --git a/lib/python/docs/index.rst b/lib/python/docs/index.rst
index 6348ed12d3f7de6514621cf6e9add754204690fc..688a62683170012b263ffc1df234c881323ab9fb 100644
--- a/lib/python/docs/index.rst
+++ b/lib/python/docs/index.rst
@@ -12,7 +12,7 @@ Quickstart
----------
Find numerous quickstart examples on
-the `DBRepo website <https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/api/>`_.
+the `DBRepo website <https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/api/>`_.
AMQP API Client
-----------
diff --git a/lib/python/pyproject.toml b/lib/python/pyproject.toml
index 2989dd3874513cf5b77dd910c3cf67a33e543c16..6ba1bdeb75204a12103e1b0797df80e505ba91da 100644
--- a/lib/python/pyproject.toml
+++ b/lib/python/pyproject.toml
@@ -1,6 +1,6 @@
[project]
name = "dbrepo"
-version = "1.4.6"
+version = "1.4.5"
description = "DBRepo Python Library"
keywords = [
"DBRepo",
diff --git a/lib/python/setup.py b/lib/python/setup.py
index b92f73d34f8384aa9bc5bcac4ef5387f9261fa0e..8785f71036fb3b888b278b48c3be9cff68f85eff 100644
--- a/lib/python/setup.py
+++ b/lib/python/setup.py
@@ -2,9 +2,9 @@
from distutils.core import setup
setup(name="dbrepo",
- version="1.4.6",
+ version="1.4.5",
description="A library for communicating with DBRepo",
- url="https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/",
+ url="https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/",
author="Martin Weise",
license="Apache-2.0",
author_email="martin.weise@tuwien.ac.at",
diff --git a/mkdocs.yml b/mkdocs.yml
index 19afed5341b4a548af2e2a01a0083e75a0e2e5b9..2c9940bbe36aa0ee34eec115f5a8827a2df34002 100644
--- a/mkdocs.yml
+++ b/mkdocs.yml
@@ -1,5 +1,5 @@
site_name: Database Repository
-site_url: https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.6/
+site_url: https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.4.5/
repo_url: https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services
repo_name: fda-services
site_author: Research Unit Data Science, Technische Universität Wien
@@ -120,7 +120,7 @@ markdown_extensions:
extra:
homepage: https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/
version:
- default: 1.4.6
+ default: 1.4.5
provider: mike
social:
- icon: simple/artifacthub
diff --git a/versions.json b/versions.json
index dc4adc279a0ddb9514930e5087fc04a3cf31b8da..e22819daa96b365ccbea63a1bbaa19c540bd8a04 100644
--- a/versions.json
+++ b/versions.json
@@ -1,9 +1,4 @@
[
- {
- "version": "1.4.6",
- "title": "1.4.6",
- "aliases": ["latest"]
- },
{
"version": "1.4.5",
"title": "1.4.5",