diff --git a/.docs/api/data-service.md b/.docs/api/data-service.md
index 64f03976132352cea195c6c231e3cc16ebc3d54b..257c68c1957fa697957c9dfc3f6b681693ac3f9d 100644
--- a/.docs/api/data-service.md
+++ b/.docs/api/data-service.md
@@ -28,8 +28,23 @@ The Data Service is responsible for inserting AMQP tuples from the Broker Servic
via [Spring AMQP](https://docs.spring.io/spring-amqp/reference/html/). To increase the number of consumers, scale the
Data Service up.
+## Data Processing
+
+The Data Service uses [Apache Spark](https://spark.apache.org/), a data engine to load data from/into
+the [Data Database](../data-db) with a wide range of open-source connectors. The default deployment uses a local mode of
+embedded processing directly in the service until there exists
+a [Bitnami Chart](https://artifacthub.io/packages/helm/bitnami/spark) for Spark 4.
+
+Retrieving data from a subset internally generates a view with the 64-character hash of the query. This view is not
+automatically deleted currently.
+
## Limitations
+* Views in DBRepo can only have 63-character length (it is assumed only internal views have the maximum length of 64
+ characters).
+* Local mode of embedded processing of Apache Spark directly in the service using
+ a [`local[2]`](https://spark.apache.org/docs/latest/#running-the-examples-and-shell) configuration.
+
!!! question "Do you miss functionality? Do these limitations affect you?"
We strongly encourage you to help us implement it as we are welcoming contributors to open-source software and get
diff --git a/.docs/api/ui.md b/.docs/api/ui.md
index 08e21b1c26e8ad6a25ca548de475c76ae82e5dc8..30b32c0a0ccde771c8bde22f21ca630d6354a9b3 100644
--- a/.docs/api/ui.md
+++ b/.docs/api/ui.md
@@ -101,7 +101,8 @@ See the [API Overview](..) page for detailed examples.
## Limitations
-(none)
+* When developing locally, the `axios` module does not parse custom headers (such as `X-Count`, `X-Headers`) and/or
+ blocks CORS requests wrongfully.
!!! question "Do you miss functionality? Do these limitations affect you?"
diff --git a/.docs/changelog.md b/.docs/changelog.md
index 98a65bf4cebdc205490b2cdfd7e1e0ee72f13984..429f6933b649570531700cbf2265c43b34329c5d 100644
--- a/.docs/changelog.md
+++ b/.docs/changelog.md
@@ -2,6 +2,17 @@
author: Martin Weise
---
+## v1.5.3 (2024-12-13)
+
+[:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.5.3)
+
+### What's Changed
+
+#### Fixes
+
+* Fixed a bug where subsets containing sub-queries are not able to retrieve data
+ in [#476](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/issues/476).
+
## v1.5.2 (2024-12-03)
[:simple-gitlab: GitLab Release](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/tags/v1.5.2)
diff --git a/.docs/index.md b/.docs/index.md
index 8265da0102bbe966821c48cb4fb9473ac20eca99..d99d08d3581e7d480dc340fef1c9632564dd129e 100644
--- a/.docs/index.md
+++ b/.docs/index.md
@@ -14,7 +14,7 @@ author: Martin Weise
-Documentation for version: [v1.5.2](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
+Documentation for version: [v1.5.3](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/releases).
DBRepo is a repository for data in databases that are used from the beginning until the end of a research
project supporting data evolution, -citation and -versioning. It implements the query store of the
diff --git a/.docs/kubernetes.md b/.docs/kubernetes.md
index fa40580f45a4a6b97222a804ae8c8699f39e2748..e553b0411030b5a1fbceff4df6cbb2ed6d876c99 100644
--- a/.docs/kubernetes.md
+++ b/.docs/kubernetes.md
@@ -14,7 +14,7 @@ helm upgrade --install dbrepo \
-n dbrepo \
"oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" \
--values ./values.yaml \
- --version "1.5.2" \
+ --version "1.5.3" \
--create-namespace \
--cleanup-on-fail
```
diff --git a/.gitlab-ci.yml b/.gitlab-ci.yml
index ac86d248266d9429e499623a2dba28691420e4dd..12d2779b65139dfc8fe9e187912fc91b7576ec39 100644
--- a/.gitlab-ci.yml
+++ b/.gitlab-ci.yml
@@ -4,8 +4,8 @@ variables:
TESTCONTAINERS_RYUK_DISABLED: "false"
PYTHON_VERSION: "3.11"
DOC_VERSION: "1.5"
- APP_VERSION: "1.5.2"
- CHART_VERSION: "1.5.2"
+ APP_VERSION: "1.5.3"
+ CHART_VERSION: "1.5.3"
CACHE_FALLBACK_KEY: ${CI_DEFAULT_BRANCH}
# This will supress any download for dependencies and plugins or upload messages which would clutter the console log.
# `showDateTime` will show the passed time in milliseconds. You need to specify `--batch-mode` to make this work.
diff --git a/Makefile b/Makefile
index 91994bda3b8a036503e05af28a152452e94fd087..a348649ecb8dbbd91969fa7ef636fc7bcbdcceae 100644
--- a/Makefile
+++ b/Makefile
@@ -1,7 +1,7 @@
.PHONY: all
-APP_VERSION ?= 1.5.2
-CHART_VERSION ?= 1.5.2
+APP_VERSION ?= 1.5.3
+CHART_VERSION ?= 1.5.3
REPOSITORY_URL ?= registry.datalab.tuwien.ac.at/dbrepo
.PHONY: all
diff --git a/dbrepo-analyse-service/Pipfile b/dbrepo-analyse-service/Pipfile
index 150d5811a6ce29bfc99588c65b5bafe6a2d87e2b..49d010321ffdd35bca3e13c59f46d2e45dfa7084 100644
--- a/dbrepo-analyse-service/Pipfile
+++ b/dbrepo-analyse-service/Pipfile
@@ -21,7 +21,7 @@ numpy = "*"
pandas = "*"
minio = "*"
pydantic = "*"
-dbrepo = {path = "./lib/dbrepo-1.5.2.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.5.3.tar.gz"}
opensearch-py = "*"
[dev-packages]
diff --git a/dbrepo-analyse-service/Pipfile.lock b/dbrepo-analyse-service/Pipfile.lock
index 8e7bafd4267885b6d55789c1c8a07a85c167a58b..ed07c44a6091c0904df910304e174771c87819f9 100644
--- a/dbrepo-analyse-service/Pipfile.lock
+++ b/dbrepo-analyse-service/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "3df8e885e462132896bafc8d6c82c70226fc2352f2088eac67186d3e171b8308"
+ "sha256": "6b47020110a5b917d5fadf008775a0cc82e88b762b0bd127895ec92419b586da"
},
"pipfile-spec": 6,
"requires": {
@@ -26,85 +26,85 @@
},
"aiohttp": {
"hashes": [
- "sha256:0411777249f25d11bd2964a230b3ffafcbed6cd65d0f2b132bc2b8f5b8c347c7",
- "sha256:0a97d657f6cf8782a830bb476c13f7d777cfcab8428ac49dde15c22babceb361",
- "sha256:0b5a5009b0159a8f707879dc102b139466d8ec6db05103ec1520394fdd8ea02c",
- "sha256:0bcb7f6976dc0b6b56efde13294862adf68dd48854111b422a336fa729a82ea6",
- "sha256:14624d96f0d69cf451deed3173079a68c322279be6030208b045ab77e1e8d550",
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- "sha256:17af09d963fa1acd7e4c280e9354aeafd9e3d47eaa4a6bfbd2171ad7da49f0c5",
- "sha256:1a8b13b9950d8b2f8f58b6e5842c4b842b5887e2c32e3f4644d6642f1659a530",
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- "sha256:fc726c3fa8f606d07bd2b500e5dc4c0fd664c59be7788a16b9e34352c50b6b6b"
+ "sha256:012f176945af138abc10c4a48743327a92b4ca9adc7a0e078077cdb5dbab7be0",
+ "sha256:02c13415b5732fb6ee7ff64583a5e6ed1c57aa68f17d2bda79c04888dfdc2769",
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+ "sha256:77ae58586930ee6b2b6f696c82cf8e78c8016ec4795c53e36718365f6959dc82",
+ "sha256:77c4aa15a89847b9891abf97f3d4048f3c2d667e00f8a623c89ad2dccee6771b",
+ "sha256:78153314f26d5abef3239b4a9af20c229c6f3ecb97d4c1c01b22c4f87669820c",
+ "sha256:7852bbcb4d0d2f0c4d583f40c3bc750ee033265d80598d0f9cb6f372baa6b836",
+ "sha256:7e97d622cb083e86f18317282084bc9fbf261801b0192c34fe4b1febd9f7ae69",
+ "sha256:7f3dc0e330575f5b134918976a645e79adf333c0a1439dcf6899a80776c9ab39",
+ "sha256:80886dac673ceaef499de2f393fc80bb4481a129e6cb29e624a12e3296cc088f",
+ "sha256:811f23b3351ca532af598405db1093f018edf81368e689d1b508c57dcc6b6a32",
+ "sha256:86a5dfcc39309470bd7b68c591d84056d195428d5d2e0b5ccadfbaf25b026ebc",
+ "sha256:8b3cf2dc0f0690a33f2d2b2cb15db87a65f1c609f53c37e226f84edb08d10f52",
+ "sha256:8cc5203b817b748adccb07f36390feb730b1bc5f56683445bfe924fc270b8816",
+ "sha256:909af95a72cedbefe5596f0bdf3055740f96c1a4baa0dd11fd74ca4de0b4e3f1",
+ "sha256:974d3a2cce5fcfa32f06b13ccc8f20c6ad9c51802bb7f829eae8a1845c4019ec",
+ "sha256:98283b94cc0e11c73acaf1c9698dea80c830ca476492c0fe2622bd931f34b487",
+ "sha256:98f5635f7b74bcd4f6f72fcd85bea2154b323a9f05226a80bc7398d0c90763b0",
+ "sha256:99b7920e7165be5a9e9a3a7f1b680f06f68ff0d0328ff4079e5163990d046767",
+ "sha256:9bca390cb247dbfaec3c664326e034ef23882c3f3bfa5fbf0b56cad0320aaca5",
+ "sha256:9e2e576caec5c6a6b93f41626c9c02fc87cd91538b81a3670b2e04452a63def6",
+ "sha256:9ef405356ba989fb57f84cac66f7b0260772836191ccefbb987f414bcd2979d9",
+ "sha256:a55d2ad345684e7c3dd2c20d2f9572e9e1d5446d57200ff630e6ede7612e307f",
+ "sha256:ab7485222db0959a87fbe8125e233b5a6f01f4400785b36e8a7878170d8c3138",
+ "sha256:b1fc6b45010a8d0ff9e88f9f2418c6fd408c99c211257334aff41597ebece42e",
+ "sha256:b78f053a7ecfc35f0451d961dacdc671f4bcbc2f58241a7c820e9d82559844cf",
+ "sha256:b99acd4730ad1b196bfb03ee0803e4adac371ae8efa7e1cbc820200fc5ded109",
+ "sha256:be2b516f56ea883a3e14dda17059716593526e10fb6303189aaf5503937db408",
+ "sha256:beb39a6d60a709ae3fb3516a1581777e7e8b76933bb88c8f4420d875bb0267c6",
+ "sha256:bf3d1a519a324af764a46da4115bdbd566b3c73fb793ffb97f9111dbc684fc4d",
+ "sha256:c49a76c1038c2dd116fa443eba26bbb8e6c37e924e2513574856de3b6516be99",
+ "sha256:c5532f0441fc09c119e1dca18fbc0687e64fbeb45aa4d6a87211ceaee50a74c4",
+ "sha256:c6b9e6d7e41656d78e37ce754813fa44b455c3d0d0dced2a047def7dc5570b74",
+ "sha256:c87bf31b7fdab94ae3adbe4a48e711bfc5f89d21cf4c197e75561def39e223bc",
+ "sha256:cbad88a61fa743c5d283ad501b01c153820734118b65aee2bd7dbb735475ce0d",
+ "sha256:cf14627232dfa8730453752e9cdc210966490992234d77ff90bc8dc0dce361d5",
+ "sha256:db1d0b28fcb7f1d35600150c3e4b490775251dea70f894bf15c678fdd84eda6a",
+ "sha256:ddf5f7d877615f6a1e75971bfa5ac88609af3b74796ff3e06879e8422729fd01",
+ "sha256:e44a9a3c053b90c6f09b1bb4edd880959f5328cf63052503f892c41ea786d99f",
+ "sha256:efb15a17a12497685304b2d976cb4939e55137df7b09fa53f1b6a023f01fcb4e",
+ "sha256:fbbaea811a2bba171197b08eea288b9402faa2bab2ba0858eecdd0a4105753a3"
],
"markers": "python_version >= '3.9'",
- "version": "==3.11.9"
+ "version": "==3.11.10"
},
"aiosignal": {
"hashes": [
@@ -175,20 +175,20 @@
},
"boto3": {
"hashes": [
- "sha256:88370c6845ba71a4dae7f6b357099df29b3965da584be040c8e72c9902bc9492",
- "sha256:dab5bddbbe57dc707b6f6a1f25dc2823b8e234b6fe99fafef7fc406ab73031b9"
+ "sha256:21a3b18c3a7fd20e463708fe3fa035983105dc7f3a1c274e1903e1583ab91159",
+ "sha256:50dae461ab5fbedfb81b690895d48a918fed0d5fdff37be1c4232770c0dc9712"
],
"index": "pypi",
"markers": "python_version >= '3.8'",
- "version": "==1.35.74"
+ "version": "==1.35.80"
},
"botocore": {
"hashes": [
- "sha256:9ac9d33d84dd9f05b35085de081552342a2c9ae22e3c4ee105723c9e92c07bd9",
- "sha256:de5c4fa9a24cef3a758974857b5c5820a12fad345ebf33c052a5988e88f33634"
+ "sha256:36e589dccb62380abd628b08fecfa2f7c89b99f41ec9fc42c467c94008c0be4a",
+ "sha256:b8dfceca58891cb2711bd6455ec4f7159051f3796e0f64adef9bb334f19d8a92"
],
"markers": "python_version >= '3.8'",
- "version": "==1.35.74"
+ "version": "==1.35.80"
},
"certifi": {
"hashes": [
@@ -397,7 +397,6 @@
"sha256:3c672a53c0fb4725a29c303be906d3c1fa99c32f58abe008a82705f9ee96f40b",
"sha256:404fdc66ee5f83a1388be54300ae978b2efd538018de18556dde92575e05defc",
"sha256:4ac4c9f37eba52cb6fbeaf5b59c152ea976726b865bd4cf87883a7e7006cc543",
- "sha256:60eb32934076fa07e4316b7b2742fa52cbb190b42c2df2863dbc4230a0a9b385",
"sha256:62901fb618f74d7d81bf408c8719e9ec14d863086efe4185afd07c352aee1d2c",
"sha256:660cb7312a08bc38be15b696462fa7cc7cd85c3ed9c576e81f4dc4d8b2b31591",
"sha256:708ee5f1bafe76d041b53a4f95eb28cdeb8d18da17e597d46d7833ee59b97ede",
@@ -405,7 +404,6 @@
"sha256:831c3c4d0774e488fdc83a1923b49b9957d33287de923d58ebd3cec47a0ae43f",
"sha256:84111ad4ff3f6253820e6d3e58be2cc2a00adb29335d4cacb5ab4d4d34f2a123",
"sha256:8b3e6eae66cf54701ee7d9c83c30ac0a1e3fa17be486033000f2a73a12ab507c",
- "sha256:9abcc2e083cbe8dde89124a47e5e53ec38751f0d7dfd36801008f316a127d7ba",
"sha256:9e6fc8a08e116fb7c7dd1f040074c9d7b51d74a8ea40d4df2fc7aa08b76b9e6c",
"sha256:a01956ddfa0a6790d594f5b34fc1bfa6098aca434696a03cfdbe469b8ed79285",
"sha256:abc998e0c0eee3c8a1904221d3f67dcfa76422b23620173e28c11d3e626c21bd",
@@ -427,9 +425,9 @@
},
"dbrepo": {
"hashes": [
- "sha256:292c2631816ca3dbdbd243e4c006c4bd39d512f5ae7e4b10070102c85ec58a10"
+ "sha256:b746668ca7830897aa9ab7660c2b6cf420a6cde09afb87665f9fa9cb4d6a2314"
],
- "path": "./lib/dbrepo-1.5.2.tar.gz"
+ "path": "./lib/dbrepo-1.5.3.tar.gz"
},
"events": {
"hashes": [
@@ -959,65 +957,65 @@
},
"numpy": {
"hashes": [
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+ "sha256:0557eebc699c1c34cccdd8c3778c9294e8196df27d713706895edc6f57d29608",
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+ "sha256:a62eb442011776e4036af5c8b1a00b706c5bc02dc15eb5344b0c750428c94219",
+ "sha256:a7d41d1612c1a82b64697e894b75db6758d4f21c3ec069d841e60ebe54b5b571",
+ "sha256:a98f6f20465e7618c83252c02041517bd2f7ea29be5378f09667a8f654a5918d",
+ "sha256:afe8fb968743d40435c3827632fd36c5fbde633b0423da7692e426529b1759b1",
+ "sha256:b0b227dcff8cdc3efbce66d4e50891f04d0a387cce282fe1e66199146a6a8fca",
+ "sha256:b30042fe92dbd79f1ba7f6898fada10bdaad1847c44f2dff9a16147e00a93661",
+ "sha256:b606b1aaf802e6468c2608c65ff7ece53eae1a6874b3765f69b8ceb20c5fa78e",
+ "sha256:b6207dc8fb3c8cb5668e885cef9ec7f70189bec4e276f0ff70d5aa078d32c88e",
+ "sha256:c2aed8fcf8abc3020d6a9ccb31dbc9e7d7819c56a348cc88fd44be269b37427e",
+ "sha256:cb24cca1968b21355cc6f3da1a20cd1cebd8a023e3c5b09b432444617949085a",
+ "sha256:cff210198bb4cae3f3c100444c5eaa573a823f05c253e7188e1362a5555235b3",
+ "sha256:d35717333b39d1b6bb8433fa758a55f1081543de527171543a2b710551d40881",
+ "sha256:df12a1f99b99f569a7c2ae59aa2d31724e8d835fc7f33e14f4792e3071d11221",
+ "sha256:e09d40edfdb4e260cb1567d8ae770ccf3b8b7e9f0d9b5c2a9992696b30ce2742",
+ "sha256:e12c6c1ce84628c52d6367863773f7c8c8241be554e8b79686e91a43f1733773",
+ "sha256:e2b8cd48a9942ed3f85b95ca4105c45758438c7ed28fff1e4ce3e57c3b589d8e",
+ "sha256:e500aba968a48e9019e42c0c199b7ec0696a97fa69037bea163b55398e390529",
+ "sha256:ebe5e59545401fbb1b24da76f006ab19734ae71e703cdb4a8b347e84a0cece67",
+ "sha256:f0dd071b95bbca244f4cb7f70b77d2ff3aaaba7fa16dc41f58d14854a6204e6c",
+ "sha256:f8c8b141ef9699ae777c6278b52c706b653bf15d135d302754f6b2e90eb30367"
],
"index": "pypi",
"markers": "python_version >= '3.10'",
- "version": "==2.1.3"
+ "version": "==2.2.0"
},
"opensearch-py": {
"hashes": [
@@ -1459,112 +1457,112 @@
},
"rpds-py": {
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+ "sha256:cff63a0272fcd259dcc3be1657b07c929c466b067ceb1c20060e8d10af56f5bf",
+ "sha256:d115bffdd417c6d806ea9069237a4ae02f513b778e3789a359bc5856e0404cc4",
+ "sha256:d20cfb4e099748ea39e6f7b16c91ab057989712d31761d3300d43134e26e165f",
+ "sha256:d48424e39c2611ee1b84ad0f44fb3b2b53d473e65de061e3f460fc0be5f1939d",
+ "sha256:e0fa2d4ec53dc51cf7d3bb22e0aa0143966119f42a0c3e4998293a3dd2856b09",
+ "sha256:e32fee8ab45d3c2db6da19a5323bc3362237c8b653c70194414b892fd06a080d",
+ "sha256:e35ba67d65d49080e8e5a1dd40101fccdd9798adb9b050ff670b7d74fa41c566",
+ "sha256:e3fb866d9932a3d7d0c82da76d816996d1667c44891bd861a0f97ba27e84fc74",
+ "sha256:e61b02c3f7a1e0b75e20c3978f7135fd13cb6cf551bf4a6d29b999a88830a338",
+ "sha256:e67ba3c290821343c192f7eae1d8fd5999ca2dc99994114643e2f2d3e6138b15",
+ "sha256:e79dd39f1e8c3504be0607e5fc6e86bb60fe3584bec8b782578c3b0fde8d932c",
+ "sha256:e89391e6d60251560f0a8f4bd32137b077a80d9b7dbe6d5cab1cd80d2746f648",
+ "sha256:ea7433ce7e4bfc3a85654aeb6747babe3f66eaf9a1d0c1e7a4435bbdf27fea84",
+ "sha256:eaf16ae9ae519a0e237a0f528fd9f0197b9bb70f40263ee57ae53c2b8d48aeb3",
+ "sha256:eb0c341fa71df5a4595f9501df4ac5abfb5a09580081dffbd1ddd4654e6e9123",
+ "sha256:f276b245347e6e36526cbd4a266a417796fc531ddf391e43574cf6466c492520",
+ "sha256:f47ad3d5f3258bd7058d2d506852217865afefe6153a36eb4b6928758041d831",
+ "sha256:f56a6b404f74ab372da986d240e2e002769a7d7102cc73eb238a4f72eec5284e",
+ "sha256:f5cf2a0c2bdadf3791b5c205d55a37a54025c6e18a71c71f82bb536cf9a454bf",
+ "sha256:f5d36399a1b96e1a5fdc91e0522544580dbebeb1f77f27b2b0ab25559e103b8b",
+ "sha256:f60bd8423be1d9d833f230fdbccf8f57af322d96bcad6599e5a771b151398eb2",
+ "sha256:f612463ac081803f243ff13cccc648578e2279295048f2a8d5eb430af2bae6e3",
+ "sha256:f73d3fef726b3243a811121de45193c0ca75f6407fe66f3f4e183c983573e130",
+ "sha256:f82a116a1d03628a8ace4859556fb39fd1424c933341a08ea3ed6de1edb0283b",
+ "sha256:fb0ba113b4983beac1a2eb16faffd76cb41e176bf58c4afe3e14b9c681f702de",
+ "sha256:fb4f868f712b2dd4bcc538b0a0c1f63a2b1d584c925e69a224d759e7070a12d5",
+ "sha256:fb6116dfb8d1925cbdb52595560584db42a7f664617a1f7d7f6e32f138cdf37d",
+ "sha256:fda7cb070f442bf80b642cd56483b5548e43d366fe3f39b98e67cce780cded00",
+ "sha256:feea821ee2a9273771bae61194004ee2fc33f8ec7db08117ef9147d4bbcbca8e"
],
"markers": "python_version >= '3.9'",
- "version": "==0.22.1"
+ "version": "==0.22.3"
},
"s3transfer": {
"hashes": [
@@ -1584,11 +1582,11 @@
},
"six": {
"hashes": [
- "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
- "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
+ "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274",
+ "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
- "version": "==1.16.0"
+ "version": "==1.17.0"
},
"tinydb": {
"hashes": [
@@ -1627,7 +1625,7 @@
"sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac",
"sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"
],
- "markers": "python_version >= '3.10'",
+ "markers": "python_version >= '3.8'",
"version": "==2.2.3"
},
"werkzeug": {
@@ -2008,72 +2006,72 @@
},
"coverage": {
"hashes": [
- "sha256:093896e530c38c8e9c996901858ac63f3d4171268db2c9c8b373a228f459bbc5",
- "sha256:09b9f848b28081e7b975a3626e9081574a7b9196cde26604540582da60235fdf",
- "sha256:0b0c69f4f724c64dfbfe79f5dfb503b42fe6127b8d479b2677f2b227478db2eb",
- "sha256:13618bed0c38acc418896005732e565b317aa9e98d855a0e9f211a7ffc2d6638",
- "sha256:13690e923a3932e4fad4c0ebfb9cb5988e03d9dcb4c5150b5fcbf58fd8bddfc4",
- "sha256:177f01eeaa3aee4a5ffb0d1439c5952b53d5010f86e9d2667963e632e30082cc",
- "sha256:193e3bffca48ad74b8c764fb4492dd875038a2f9925530cb094db92bb5e47bed",
- "sha256:1defe91d41ce1bd44b40fabf071e6a01a5aa14de4a31b986aa9dfd1b3e3e414a",
- "sha256:1f188a2402f8359cf0c4b1fe89eea40dc13b52e7b4fd4812450da9fcd210181d",
- "sha256:202a2d645c5a46b84992f55b0a3affe4f0ba6b4c611abec32ee88358db4bb649",
- "sha256:24eda3a24a38157eee639ca9afe45eefa8d2420d49468819ac5f88b10de84f4c",
- "sha256:2e4e0f60cb4bd7396108823548e82fdab72d4d8a65e58e2c19bbbc2f1e2bfa4b",
- "sha256:379c111d3558272a2cae3d8e57e6b6e6f4fe652905692d54bad5ea0ca37c5ad4",
- "sha256:37cda8712145917105e07aab96388ae76e787270ec04bcb9d5cc786d7cbb8443",
- "sha256:38c51297b35b3ed91670e1e4efb702b790002e3245a28c76e627478aa3c10d83",
- "sha256:3985b9be361d8fb6b2d1adc9924d01dec575a1d7453a14cccd73225cb79243ee",
- "sha256:3988665ee376abce49613701336544041f2117de7b7fbfe91b93d8ff8b151c8e",
- "sha256:3ac47fa29d8d41059ea3df65bd3ade92f97ee4910ed638e87075b8e8ce69599e",
- "sha256:3b4b4299dd0d2c67caaaf286d58aef5e75b125b95615dda4542561a5a566a1e3",
- "sha256:3ea8bb1ab9558374c0ab591783808511d135a833c3ca64a18ec927f20c4030f0",
- "sha256:3fe47da3e4fda5f1abb5709c156eca207eacf8007304ce3019eb001e7a7204cb",
- "sha256:428ac484592f780e8cd7b6b14eb568f7c85460c92e2a37cb0c0e5186e1a0d076",
- "sha256:44e6c85bbdc809383b509d732b06419fb4544dca29ebe18480379633623baafb",
- "sha256:4674f0daa1823c295845b6a740d98a840d7a1c11df00d1fd62614545c1583787",
- "sha256:4be32da0c3827ac9132bb488d331cb32e8d9638dd41a0557c5569d57cf22c9c1",
- "sha256:4db3ed6a907b555e57cc2e6f14dc3a4c2458cdad8919e40b5357ab9b6db6c43e",
- "sha256:5c52a036535d12590c32c49209e79cabaad9f9ad8aa4cbd875b68c4d67a9cbce",
- "sha256:629a1ba2115dce8bf75a5cce9f2486ae483cb89c0145795603d6554bdc83e801",
- "sha256:62a66ff235e4c2e37ed3b6104d8b478d767ff73838d1222132a7a026aa548764",
- "sha256:63068a11171e4276f6ece913bde059e77c713b48c3a848814a6537f35afb8365",
- "sha256:63c19702db10ad79151a059d2d6336fe0c470f2e18d0d4d1a57f7f9713875dcf",
- "sha256:644ec81edec0f4ad17d51c838a7d01e42811054543b76d4ba2c5d6af741ce2a6",
- "sha256:6535d996f6537ecb298b4e287a855f37deaf64ff007162ec0afb9ab8ba3b8b71",
- "sha256:6f4548c5ead23ad13fb7a2c8ea541357474ec13c2b736feb02e19a3085fac002",
- "sha256:716a78a342679cd1177bc8c2fe957e0ab91405bd43a17094324845200b2fddf4",
- "sha256:74610105ebd6f33d7c10f8907afed696e79c59e3043c5f20eaa3a46fddf33b4c",
- "sha256:768939f7c4353c0fac2f7c37897e10b1414b571fd85dd9fc49e6a87e37a2e0d8",
- "sha256:86cffe9c6dfcfe22e28027069725c7f57f4b868a3f86e81d1c62462764dc46d4",
- "sha256:8aae5aea53cbfe024919715eca696b1a3201886ce83790537d1c3668459c7146",
- "sha256:8b2b8503edb06822c86d82fa64a4a5cb0760bb8f31f26e138ec743f422f37cfc",
- "sha256:912e95017ff51dc3d7b6e2be158dedc889d9a5cc3382445589ce554f1a34c0ea",
- "sha256:9a7b8ac36fd688c8361cbc7bf1cb5866977ece6e0b17c34aa0df58bda4fa18a4",
- "sha256:9e89d5c8509fbd6c03d0dd1972925b22f50db0792ce06324ba069f10787429ad",
- "sha256:ae270e79f7e169ccfe23284ff5ea2d52a6f401dc01b337efb54b3783e2ce3f28",
- "sha256:b07c25d52b1c16ce5de088046cd2432b30f9ad5e224ff17c8f496d9cb7d1d451",
- "sha256:b39e6011cd06822eb964d038d5dff5da5d98652b81f5ecd439277b32361a3a50",
- "sha256:bd55f8fc8fa494958772a2a7302b0354ab16e0b9272b3c3d83cdb5bec5bd1779",
- "sha256:c15b32a7aca8038ed7644f854bf17b663bc38e1671b5d6f43f9a2b2bd0c46f63",
- "sha256:c1b4474beee02ede1eef86c25ad4600a424fe36cff01a6103cb4533c6bf0169e",
- "sha256:c79c0685f142ca53256722a384540832420dff4ab15fec1863d7e5bc8691bdcc",
- "sha256:c9ebfb2507751f7196995142f057d1324afdab56db1d9743aab7f50289abd022",
- "sha256:d7ad66e8e50225ebf4236368cc43c37f59d5e6728f15f6e258c8639fa0dd8e6d",
- "sha256:d82ab6816c3277dc962cfcdc85b1efa0e5f50fb2c449432deaf2398a2928ab94",
- "sha256:d9fd2547e6decdbf985d579cf3fc78e4c1d662b9b0ff7cc7862baaab71c9cc5b",
- "sha256:de38add67a0af869b0d79c525d3e4588ac1ffa92f39116dbe0ed9753f26eba7d",
- "sha256:e19122296822deafce89a0c5e8685704c067ae65d45e79718c92df7b3ec3d331",
- "sha256:e44961e36cb13c495806d4cac67640ac2866cb99044e210895b506c26ee63d3a",
- "sha256:e4c81ed2820b9023a9a90717020315e63b17b18c274a332e3b6437d7ff70abe0",
- "sha256:e683e6ecc587643f8cde8f5da6768e9d165cd31edf39ee90ed7034f9ca0eefee",
- "sha256:f39e2f3530ed1626c66e7493be7a8423b023ca852aacdc91fb30162c350d2a92",
- "sha256:f56f49b2553d7dd85fd86e029515a221e5c1f8cb3d9c38b470bc38bde7b8445a",
- "sha256:fb9fc32399dca861584d96eccd6c980b69bbcd7c228d06fb74fe53e007aa8ef9"
+ "sha256:0824a28ec542a0be22f60c6ac36d679e0e262e5353203bea81d44ee81fe9c6d4",
+ "sha256:085161be5f3b30fd9b3e7b9a8c301f935c8313dcf928a07b116324abea2c1c2c",
+ "sha256:0ae1387db4aecb1f485fb70a6c0148c6cdaebb6038f1d40089b1fc84a5db556f",
+ "sha256:0d59fd927b1f04de57a2ba0137166d31c1a6dd9e764ad4af552912d70428c92b",
+ "sha256:0f957943bc718b87144ecaee70762bc2bc3f1a7a53c7b861103546d3a403f0a6",
+ "sha256:13a9e2d3ee855db3dd6ea1ba5203316a1b1fd8eaeffc37c5b54987e61e4194ae",
+ "sha256:1a330812d9cc7ac2182586f6d41b4d0fadf9be9049f350e0efb275c8ee8eb692",
+ "sha256:22be16571504c9ccea919fcedb459d5ab20d41172056206eb2994e2ff06118a4",
+ "sha256:2d10e07aa2b91835d6abec555ec8b2733347956991901eea6ffac295f83a30e4",
+ "sha256:35371f8438028fdccfaf3570b31d98e8d9eda8bb1d6ab9473f5a390969e98717",
+ "sha256:3c026eb44f744acaa2bda7493dad903aa5bf5fc4f2554293a798d5606710055d",
+ "sha256:41ff7b0da5af71a51b53f501a3bac65fb0ec311ebed1632e58fc6107f03b9198",
+ "sha256:4401ae5fc52ad8d26d2a5d8a7428b0f0c72431683f8e63e42e70606374c311a1",
+ "sha256:44349150f6811b44b25574839b39ae35291f6496eb795b7366fef3bd3cf112d3",
+ "sha256:447af20e25fdbe16f26e84eb714ba21d98868705cb138252d28bc400381f6ffb",
+ "sha256:4a8d8977b0c6ef5aeadcb644da9e69ae0dcfe66ec7f368c89c72e058bd71164d",
+ "sha256:4e12ae8cc979cf83d258acb5e1f1cf2f3f83524d1564a49d20b8bec14b637f08",
+ "sha256:592ac539812e9b46046620341498caf09ca21023c41c893e1eb9dbda00a70cbf",
+ "sha256:5e6b86b5847a016d0fbd31ffe1001b63355ed309651851295315031ea7eb5a9b",
+ "sha256:608a7fd78c67bee8936378299a6cb9f5149bb80238c7a566fc3e6717a4e68710",
+ "sha256:61f70dc68bd36810972e55bbbe83674ea073dd1dcc121040a08cdf3416c5349c",
+ "sha256:65dad5a248823a4996724a88eb51d4b31587aa7aa428562dbe459c684e5787ae",
+ "sha256:777abfab476cf83b5177b84d7486497e034eb9eaea0d746ce0c1268c71652077",
+ "sha256:7e216d8044a356fc0337c7a2a0536d6de07888d7bcda76febcb8adc50bdbbd00",
+ "sha256:85d9636f72e8991a1706b2b55b06c27545448baf9f6dbf51c4004609aacd7dcb",
+ "sha256:899b8cd4781c400454f2f64f7776a5d87bbd7b3e7f7bda0cb18f857bb1334664",
+ "sha256:8a289d23d4c46f1a82d5db4abeb40b9b5be91731ee19a379d15790e53031c014",
+ "sha256:8d2dfa71665a29b153a9681edb1c8d9c1ea50dfc2375fb4dac99ea7e21a0bcd9",
+ "sha256:8e3c3e38930cfb729cb8137d7f055e5a473ddaf1217966aa6238c88bd9fd50e6",
+ "sha256:8f8770dfc6e2c6a2d4569f411015c8d751c980d17a14b0530da2d7f27ffdd88e",
+ "sha256:932fc826442132dde42ee52cf66d941f581c685a6313feebed358411238f60f9",
+ "sha256:96d636c77af18b5cb664ddf12dab9b15a0cfe9c0bde715da38698c8cea748bfa",
+ "sha256:97ddc94d46088304772d21b060041c97fc16bdda13c6c7f9d8fcd8d5ae0d8611",
+ "sha256:98caba4476a6c8d59ec1eb00c7dd862ba9beca34085642d46ed503cc2d440d4b",
+ "sha256:9901d36492009a0a9b94b20e52ebfc8453bf49bb2b27bca2c9706f8b4f5a554a",
+ "sha256:99e266ae0b5d15f1ca8d278a668df6f51cc4b854513daab5cae695ed7b721cf8",
+ "sha256:9c38bf15a40ccf5619fa2fe8f26106c7e8e080d7760aeccb3722664c8656b030",
+ "sha256:a27801adef24cc30871da98a105f77995e13a25a505a0161911f6aafbd66e678",
+ "sha256:abd3e72dd5b97e3af4246cdada7738ef0e608168de952b837b8dd7e90341f015",
+ "sha256:adb697c0bd35100dc690de83154627fbab1f4f3c0386df266dded865fc50a902",
+ "sha256:b12c6b18269ca471eedd41c1b6a1065b2f7827508edb9a7ed5555e9a56dcfc97",
+ "sha256:b9389a429e0e5142e69d5bf4a435dd688c14478a19bb901735cdf75e57b13845",
+ "sha256:ba9e7484d286cd5a43744e5f47b0b3fb457865baf07bafc6bee91896364e1419",
+ "sha256:bb5555cff66c4d3d6213a296b360f9e1a8e323e74e0426b6c10ed7f4d021e464",
+ "sha256:be57b6d56e49c2739cdf776839a92330e933dd5e5d929966fbbd380c77f060be",
+ "sha256:c69e42c892c018cd3c8d90da61d845f50a8243062b19d228189b0224150018a9",
+ "sha256:ccc660a77e1c2bf24ddbce969af9447a9474790160cfb23de6be4fa88e3951c7",
+ "sha256:d5275455b3e4627c8e7154feaf7ee0743c2e7af82f6e3b561967b1cca755a0be",
+ "sha256:d75cded8a3cff93da9edc31446872d2997e327921d8eed86641efafd350e1df1",
+ "sha256:d872ec5aeb086cbea771c573600d47944eea2dcba8be5f3ee649bfe3cb8dc9ba",
+ "sha256:d891c136b5b310d0e702e186d70cd16d1119ea8927347045124cb286b29297e5",
+ "sha256:db1dab894cc139f67822a92910466531de5ea6034ddfd2b11c0d4c6257168073",
+ "sha256:e28bf44afa2b187cc9f41749138a64435bf340adfcacb5b2290c070ce99839d4",
+ "sha256:e5ea1cf0872ee455c03e5674b5bca5e3e68e159379c1af0903e89f5eba9ccc3a",
+ "sha256:e77363e8425325384f9d49272c54045bbed2f478e9dd698dbc65dbc37860eb0a",
+ "sha256:ee5defd1733fd6ec08b168bd4f5387d5b322f45ca9e0e6c817ea6c4cd36313e3",
+ "sha256:f1592791f8204ae9166de22ba7e6705fa4ebd02936c09436a1bb85aabca3e599",
+ "sha256:f2d1ec60d6d256bdf298cb86b78dd715980828f50c46701abc3b0a2b3f8a0dc0",
+ "sha256:f3ca78518bc6bc92828cd11867b121891d75cae4ea9e908d72030609b996db1b",
+ "sha256:f7b15f589593110ae767ce997775d645b47e5cbbf54fd322f8ebea6277466cec",
+ "sha256:fd1213c86e48dfdc5a0cc676551db467495a95a662d2396ecd58e719191446e1",
+ "sha256:ff74026a461eb0660366fb01c650c1d00f833a086b336bdad7ab00cc952072b3"
],
"index": "pypi",
"markers": "python_version >= '3.9'",
- "version": "==7.6.8"
+ "version": "==7.6.9"
},
"docker": {
"hashes": [
@@ -2222,11 +2220,11 @@
},
"six": {
"hashes": [
- "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
- "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
+ "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274",
+ "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
- "version": "==1.16.0"
+ "version": "==1.17.0"
},
"testcontainers-core": {
"hashes": [
@@ -2264,7 +2262,7 @@
"sha256:ca899ca043dcb1bafa3e262d73aa25c465bfb49e0bd9dd5d59f1d0acba2f8fac",
"sha256:e7d814a81dad81e6caf2ec9fdedb284ecc9c73076b62654547cc64ccdcae26e9"
],
- "markers": "python_version >= '3.10'",
+ "markers": "python_version >= '3.8'",
"version": "==2.2.3"
},
"wrapt": {
diff --git a/dbrepo-analyse-service/lib/dbrepo-1.5.3.tar.gz b/dbrepo-analyse-service/lib/dbrepo-1.5.3.tar.gz
new file mode 100644
index 0000000000000000000000000000000000000000..2bb796d8fece2d97c3b2168248ff493dfa24a549
Binary files /dev/null and b/dbrepo-analyse-service/lib/dbrepo-1.5.3.tar.gz differ
diff --git a/dbrepo-data-service/pom.xml b/dbrepo-data-service/pom.xml
index 5f813b94c7f6861b26e36ceb70c74d3c8c8e26fd..99822586dbea93aadbf3ad9f1013d9551012d185 100644
--- a/dbrepo-data-service/pom.xml
+++ b/dbrepo-data-service/pom.xml
@@ -11,7 +11,7 @@
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
<name>dbrepo-data-service</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<description>Service that manages the data</description>
@@ -44,7 +44,6 @@
<jwt.version>4.3.0</jwt.version>
<opencsv.version>5.7.1</opencsv.version>
<super-csv.version>2.4.0</super-csv.version>
- <jsql.version>4.6</jsql.version>
<springdoc-openapi.version>2.3.0</springdoc-openapi.version>
<hsqldb.version>2.7.2</hsqldb.version>
<testcontainers.version>1.19.1</testcontainers.version>
@@ -64,6 +63,10 @@
</properties>
<dependencies>
+ <dependency>
+ <groupId>org.springframework.boot</groupId>
+ <artifactId>spring-boot-starter-validation</artifactId>
+ </dependency>
<dependency>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-web</artifactId>
@@ -208,11 +211,6 @@
<artifactId>jackson-datatype-hibernate6</artifactId>
<version>${jackson-datatype.version}</version>
</dependency>
- <dependency>
- <groupId>com.github.jsqlparser</groupId>
- <artifactId>jsqlparser</artifactId>
- <version>${jsql.version}</version>
- </dependency>
<!-- Authentication -->
<dependency>
<groupId>com.auth0</groupId>
diff --git a/dbrepo-data-service/querystore/pom.xml b/dbrepo-data-service/querystore/pom.xml
index a508c88343838c4e04601b6ad91496643eb7bb96..1c794f4ef603eedbc5c36396515353832bb859f9 100644
--- a/dbrepo-data-service/querystore/pom.xml
+++ b/dbrepo-data-service/querystore/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-data-service-querystore</artifactId>
<name>dbrepo-data-service-querystore</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies/>
diff --git a/dbrepo-data-service/report/pom.xml b/dbrepo-data-service/report/pom.xml
index da3d605405f9b4ab85d3e23bd30f15025962f187..2315b33d4844bfa12bcc51a8c54ea202bd6f01a5 100644
--- a/dbrepo-data-service/report/pom.xml
+++ b/dbrepo-data-service/report/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>report</artifactId>
<name>dbrepo-data-service-report</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<description>
This module is only intended for the pipeline coverage report. See the detailed report in the
respective modules
diff --git a/dbrepo-data-service/rest-service/pom.xml b/dbrepo-data-service/rest-service/pom.xml
index 0859d437249495400f536e22aea82130fdd1ef98..96b02e1b506ad488b757813d07ec350e00f067ee 100644
--- a/dbrepo-data-service/rest-service/pom.xml
+++ b/dbrepo-data-service/rest-service/pom.xml
@@ -6,18 +6,18 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>rest-service</artifactId>
<name>dbrepo-data-service-rest-service</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
<groupId>at.tuwien</groupId>
<artifactId>services</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</dependency>
</dependencies>
diff --git a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/AbstractEndpoint.java b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/AbstractEndpoint.java
new file mode 100644
index 0000000000000000000000000000000000000000..334128637ec5113e6478567d30e44b2f61ea3f5b
--- /dev/null
+++ b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/AbstractEndpoint.java
@@ -0,0 +1,34 @@
+package at.tuwien.endpoints;
+
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Row;
+
+import java.util.LinkedHashMap;
+import java.util.List;
+import java.util.Map;
+
+public abstract class AbstractEndpoint {
+
+ public List<Map<String, Object>> transform(Dataset<Row> dataset) {
+ return dataset.collectAsList()
+ .stream()
+ .map(row -> {
+ final Map<String, Object> map = new LinkedHashMap<>();
+ for (int i = 0; i < dataset.columns().length; i++) {
+ if (row.get(i) == null) {
+ map.put(dataset.columns()[i], null);
+ continue;
+ }
+ try {
+ map.put(dataset.columns()[i], Integer.parseInt(String.valueOf(row.get(i))));
+ map.put(dataset.columns()[i], Double.parseDouble(String.valueOf(row.get(i))));
+ } catch (NumberFormatException e) {
+ /* ignore */
+ }
+ map.put(dataset.columns()[i], String.valueOf(row.get(i)));
+ }
+ return map;
+ })
+ .toList();
+ }
+}
diff --git a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/SubsetEndpoint.java b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/SubsetEndpoint.java
index 63962694f164a79e6268b579372f6324704f9fa7..22b74f9d5ad3fe19b122cd008eb0ec7009cd6074 100644
--- a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/SubsetEndpoint.java
+++ b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/SubsetEndpoint.java
@@ -1,14 +1,18 @@
package at.tuwien.endpoints;
import at.tuwien.ExportResourceDto;
+import at.tuwien.api.database.ViewColumnDto;
+import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.ExecuteStatementDto;
import at.tuwien.api.database.query.QueryDto;
import at.tuwien.api.database.query.QueryPersistDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.error.ApiErrorDto;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
+import at.tuwien.mapper.MetadataMapper;
+import at.tuwien.service.SchemaService;
+import at.tuwien.service.StorageService;
import at.tuwien.service.SubsetService;
import at.tuwien.utils.UserUtil;
import at.tuwien.validation.EndpointValidator;
@@ -25,10 +29,10 @@ import jakarta.servlet.http.HttpServletRequest;
import jakarta.validation.Valid;
import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
-import org.apache.commons.lang3.RandomStringUtils;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Row;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.http.HttpHeaders;
-import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import org.springframework.security.access.prepost.PreAuthorize;
@@ -38,22 +42,30 @@ import java.security.Principal;
import java.sql.SQLException;
import java.time.Instant;
import java.util.List;
+import java.util.Map;
import java.util.UUID;
@Log4j2
@RestController
@CrossOrigin(origins = "*")
@RequestMapping(path = "/api/database/{databaseId}/subset")
-public class SubsetEndpoint {
+public class SubsetEndpoint extends AbstractEndpoint {
+ private final SchemaService schemaService;
private final SubsetService subsetService;
+ private final MetadataMapper metadataMapper;
+ private final StorageService storageService;
private final EndpointValidator endpointValidator;
private final MetadataServiceGateway metadataServiceGateway;
@Autowired
- public SubsetEndpoint(SubsetService queryService, EndpointValidator endpointValidator,
+ public SubsetEndpoint(SchemaService schemaService, SubsetService subsetService, MetadataMapper metadataMapper,
+ StorageService storageService, EndpointValidator endpointValidator,
MetadataServiceGateway metadataServiceGateway) {
- this.subsetService = queryService;
+ this.schemaService = schemaService;
+ this.subsetService = subsetService;
+ this.metadataMapper = metadataMapper;
+ this.storageService = storageService;
this.endpointValidator = endpointValidator;
this.metadataServiceGateway = metadataServiceGateway;
}
@@ -145,16 +157,15 @@ public class SubsetEndpoint {
@NotNull HttpServletRequest httpServletRequest,
@RequestParam(required = false) Instant timestamp)
throws DatabaseUnavailableException, DatabaseNotFoundException, RemoteUnavailableException,
- QueryNotFoundException, FormatNotAvailableException, StorageUnavailableException, QueryMalformedException,
- StorageNotFoundException, UserNotFoundException, MetadataServiceException, ViewNotFoundException,
- MalformedException {
+ QueryNotFoundException, FormatNotAvailableException, StorageUnavailableException, UserNotFoundException,
+ MetadataServiceException, TableNotFoundException, ViewMalformedException, QueryMalformedException {
String accept = httpServletRequest.getHeader("Accept");
log.debug("endpoint find subset in database, databaseId={}, subsetId={}, accept={}, timestamp={}", databaseId,
subsetId, accept, timestamp);
final PrivilegedDatabaseDto database = metadataServiceGateway.getDatabaseById(databaseId);
- final QueryDto query;
+ final QueryDto subset;
try {
- query = subsetService.findById(database, subsetId);
+ subset = subsetService.findById(database, subsetId);
} catch (SQLException e) {
log.error("Failed to establish connection to database: {}", e.getMessage());
throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
@@ -171,21 +182,21 @@ public class SubsetEndpoint {
switch (accept) {
case MediaType.APPLICATION_JSON_VALUE:
log.trace("accept header matches json");
- return ResponseEntity.ok(query);
+ return ResponseEntity.ok(subset);
case "text/csv":
log.trace("accept header matches csv");
try {
- final ExportResourceDto resource = subsetService.export(database, query, timestamp);
+ final Dataset<Row> dataset = subsetService.getData(database, subset, null, null);
+ final ExportResourceDto resource = storageService.transformDataset(dataset);
final HttpHeaders headers = new HttpHeaders();
headers.add("Content-Disposition", "attachment; filename=\"" + resource.getFilename() + "\"");
log.trace("export table resulted in resource {}", resource);
return ResponseEntity.ok()
.headers(headers)
.body(resource.getResource());
-
} catch (SQLException e) {
- log.error("Failed to establish connection to database: {}", e.getMessage());
- throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
+ log.error("Failed to find data: {}", e.getMessage());
+ throw new DatabaseUnavailableException("Failed to find data: " + e.getMessage(), e);
}
}
throw new FormatNotAvailableException("Must provide either application/json or text/csv headers");
@@ -201,7 +212,7 @@ public class SubsetEndpoint {
description = "Created subset",
content = {@Content(
mediaType = "application/json",
- schema = @Schema(implementation = QueryResultDto.class))}),
+ schema = @Schema(implementation = List.class))}),
@ApiResponse(responseCode = "400",
description = "Malformed select query",
content = {@Content(
@@ -233,16 +244,18 @@ public class SubsetEndpoint {
mediaType = "application/json",
schema = @Schema(implementation = ApiErrorDto.class))}),
})
- public ResponseEntity<QueryResultDto> create(@NotNull @PathVariable("databaseId") Long databaseId,
- @Valid @RequestBody ExecuteStatementDto data,
- Principal principal,
- @RequestParam(required = false) Long page,
- @RequestParam(required = false) Long size,
- @RequestParam(required = false) Instant timestamp)
+ public ResponseEntity<List<Map<String, Object>>> create(@NotNull @PathVariable("databaseId") Long databaseId,
+ @Valid @RequestBody ExecuteStatementDto data,
+ Principal principal,
+ @NotNull HttpServletRequest request,
+ @RequestParam(required = false) Instant timestamp,
+ @RequestParam(required = false) Long page,
+ @RequestParam(required = false) Long size)
throws DatabaseUnavailableException, DatabaseNotFoundException, RemoteUnavailableException,
QueryNotFoundException, StorageUnavailableException, QueryMalformedException, StorageNotFoundException,
QueryStoreInsertException, TableMalformedException, PaginationException, QueryNotSupportedException,
- NotAllowedException, UserNotFoundException, MetadataServiceException {
+ NotAllowedException, UserNotFoundException, MetadataServiceException, TableNotFoundException,
+ ViewMalformedException, ViewNotFoundException {
log.debug("endpoint create subset in database, databaseId={}, data.statement={}, page={}, size={}, " +
"timestamp={}", databaseId, data.getStatement(), page, size,
timestamp);
@@ -265,17 +278,13 @@ public class SubsetEndpoint {
}
/* create */
final PrivilegedDatabaseDto database = metadataServiceGateway.getDatabaseById(databaseId);
- final QueryResultDto queryResult;
try {
- queryResult = subsetService.execute(database, data.getStatement(), timestamp, userId, page, size, null,
- null);
+ final Long subsetId = subsetService.create(database, data.getStatement(), timestamp, userId);
+ return getData(databaseId, subsetId, principal, request, page, size);
} catch (SQLException e) {
log.error("Failed to establish connection to database: {}", e.getMessage());
throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
}
- log.info("Created subset with id: {}", queryResult.getId());
- return ResponseEntity.status(HttpStatus.CREATED)
- .body(queryResult);
}
@RequestMapping(value = "/{subsetId}/data", method = {RequestMethod.GET, RequestMethod.HEAD})
@@ -286,11 +295,13 @@ public class SubsetEndpoint {
@ApiResponses(value = {
@ApiResponse(responseCode = "200",
description = "Retrieved subset data",
- headers = {@Header(name = "X-Count", description = "Number of rows", schema = @Schema(implementation = Long.class), required = true),
- @Header(name = "Access-Control-Expose-Headers", description = "Expose `X-Count` custom header", schema = @Schema(implementation = String.class), required = true)},
+ headers = {@Header(name = "X-Count", description = "Number of rows", schema = @Schema(implementation = Long.class)),
+ @Header(name = "X-Headers", description = "The list of headers separated by comma", schema = @Schema(implementation = String.class)),
+ @Header(name = "X-Id", description = "The subset id", schema = @Schema(implementation = Long.class), required = true),
+ @Header(name = "Access-Control-Expose-Headers", description = "Reverse proxy exposing of custom headers", schema = @Schema(implementation = String.class), required = true)},
content = {@Content(
mediaType = "application/json",
- schema = @Schema(implementation = QueryResultDto.class))}),
+ schema = @Schema(implementation = List.class))}),
@ApiResponse(responseCode = "400",
description = "Invalid pagination",
content = {@Content(
@@ -312,16 +323,16 @@ public class SubsetEndpoint {
mediaType = "application/json",
schema = @Schema(implementation = ApiErrorDto.class))}),
})
- public ResponseEntity<QueryResultDto> getData(@NotNull @PathVariable("databaseId") Long databaseId,
- @NotNull @PathVariable("subsetId") Long subsetId,
- Principal principal,
- @NotNull HttpServletRequest request,
- @RequestParam(required = false) Long page,
- @RequestParam(required = false) Long size) throws PaginationException,
- DatabaseNotFoundException, RemoteUnavailableException, NotAllowedException, QueryNotFoundException,
- DatabaseUnavailableException, TableMalformedException, QueryMalformedException, UserNotFoundException,
- MetadataServiceException {
- log.debug("endpoint re-execute query, databaseId={}, subsetId={}, principal.name={} page={}, size={}",
+ public ResponseEntity<List<Map<String, Object>>> getData(@NotNull @PathVariable("databaseId") Long databaseId,
+ @NotNull @PathVariable("subsetId") Long subsetId,
+ Principal principal,
+ @NotNull HttpServletRequest request,
+ @RequestParam(required = false) Long page,
+ @RequestParam(required = false) Long size)
+ throws PaginationException, DatabaseNotFoundException, RemoteUnavailableException, NotAllowedException,
+ QueryNotFoundException, DatabaseUnavailableException, TableMalformedException, QueryMalformedException,
+ UserNotFoundException, MetadataServiceException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
+ log.debug("endpoint get subset data, databaseId={}, subsetId={}, principal.name={} page={}, size={}",
databaseId, subsetId, principal != null ? principal.getName() : null, page, size);
endpointValidator.validateDataParams(page, size);
final PrivilegedDatabaseDto database = metadataServiceGateway.getDatabaseById(databaseId);
@@ -342,21 +353,24 @@ public class SubsetEndpoint {
log.debug("size not set: default to {}", size);
}
try {
- final QueryDto query = subsetService.findById(database, subsetId);
+ final HttpHeaders headers = new HttpHeaders();
+ headers.set("X-Id", "" + subsetId);
+ final QueryDto subset = subsetService.findById(database, subsetId);
if (request.getMethod().equals("HEAD")) {
- final HttpHeaders headers = new HttpHeaders();
- headers.set("Access-Control-Expose-Headers", "X-Count");
- final Long count = subsetService.reExecuteCount(database, query);
+ headers.set("Access-Control-Expose-Headers", "X-Count X-Id");
+ final Long count = subsetService.reExecuteCount(database, subset);
headers.set("X-Count", "" + count);
return ResponseEntity.ok()
.headers(headers)
.build();
}
- final QueryResultDto result = subsetService.reExecute(database, query, page, size, null, null);
- result.setId(subsetId);
- log.trace("re-execute query resulted in result {}", result);
+ final Dataset<Row> dataset = subsetService.getData(database, subset, page, size);
+ final ViewDto view = schemaService.inspectView(database, metadataMapper.queryDtoToViewName(subset));
+ headers.set("Access-Control-Expose-Headers", "X-Id X-Headers");
+ headers.set("X-Headers", String.join(",", view.getColumns().stream().map(ViewColumnDto::getInternalName).toList()));
return ResponseEntity.ok()
- .body(result);
+ .headers(headers)
+ .body(transform(dataset));
} catch (SQLException e) {
log.error("Failed to establish connection to database: {}", e.getMessage());
throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
diff --git a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/TableEndpoint.java b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/TableEndpoint.java
index 2a9beb3d04fdd137340571ea122bf8e398738044..54a19850a4bafce9c7fe6c102aa2b5007b279de9 100644
--- a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/TableEndpoint.java
+++ b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/TableEndpoint.java
@@ -5,14 +5,15 @@ import at.tuwien.api.database.DatabaseAccessDto;
import at.tuwien.api.database.DatabaseDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.ImportDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.*;
+import at.tuwien.api.database.table.columns.ColumnDto;
import at.tuwien.api.database.table.internal.PrivilegedTableDto;
import at.tuwien.api.database.table.internal.TableCreateDto;
import at.tuwien.api.error.ApiErrorDto;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.service.SchemaService;
+import at.tuwien.service.StorageService;
import at.tuwien.service.TableService;
import at.tuwien.utils.UserUtil;
import at.tuwien.validation.EndpointValidator;
@@ -29,6 +30,8 @@ import jakarta.servlet.http.HttpServletRequest;
import jakarta.validation.Valid;
import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Row;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.io.InputStreamResource;
import org.springframework.http.HttpHeaders;
@@ -41,23 +44,26 @@ import java.security.Principal;
import java.sql.SQLException;
import java.time.Instant;
import java.util.List;
+import java.util.Map;
@Log4j2
@RestController
@CrossOrigin(origins = "*")
@RequestMapping(path = "/api/database/{databaseId}/table")
-public class TableEndpoint {
+public class TableEndpoint extends AbstractEndpoint {
private final TableService tableService;
private final SchemaService schemaService;
+ private final StorageService storageService;
private final EndpointValidator endpointValidator;
private final MetadataServiceGateway metadataServiceGateway;
@Autowired
- public TableEndpoint(TableService tableService, SchemaService schemaService, EndpointValidator endpointValidator,
- MetadataServiceGateway metadataServiceGateway) {
+ public TableEndpoint(TableService tableService, SchemaService schemaService, StorageService storageService,
+ EndpointValidator endpointValidator, MetadataServiceGateway metadataServiceGateway) {
this.tableService = tableService;
this.schemaService = schemaService;
+ this.storageService = storageService;
this.endpointValidator = endpointValidator;
this.metadataServiceGateway = metadataServiceGateway;
}
@@ -171,7 +177,7 @@ public class TableEndpoint {
@Header(name = "Access-Control-Expose-Headers", description = "Expose `X-Count` custom header", schema = @Schema(implementation = String.class), required = true)},
content = {@Content(
mediaType = "application/json",
- schema = @Schema(implementation = QueryResultDto.class))}),
+ schema = @Schema(implementation = List.class))}),
@ApiResponse(responseCode = "400",
description = "Request pagination or table data select query is malformed",
content = {@Content(
@@ -193,17 +199,16 @@ public class TableEndpoint {
mediaType = "application/json",
schema = @Schema(implementation = ApiErrorDto.class))}),
})
- public ResponseEntity<QueryResultDto> getData(@NotNull @PathVariable("databaseId") Long databaseId,
- @NotNull @PathVariable("tableId") Long tableId,
- @RequestParam(required = false) Instant timestamp,
- @RequestParam(required = false) Long page,
- @RequestParam(required = false) Long size,
- @NotNull HttpServletRequest request,
- Principal principal)
+ public ResponseEntity<List<Map<String, Object>>> getData(@NotNull @PathVariable("databaseId") Long databaseId,
+ @NotNull @PathVariable("tableId") Long tableId,
+ @RequestParam(required = false) Instant timestamp,
+ @RequestParam(required = false) Long page,
+ @RequestParam(required = false) Long size,
+ @NotNull HttpServletRequest request,
+ Principal principal)
throws DatabaseUnavailableException, RemoteUnavailableException, TableNotFoundException,
- TableMalformedException, PaginationException, QueryMalformedException, MetadataServiceException,
- NotAllowedException {
- log.debug("endpoint find table data, databaseId={}, tableId={}, timestamp={}, page={}, size={}", databaseId,
+ PaginationException, QueryMalformedException, MetadataServiceException, NotAllowedException {
+ log.debug("endpoint get table data, databaseId={}, tableId={}, timestamp={}, page={}, size={}", databaseId,
tableId, timestamp, page, size);
endpointValidator.validateDataParams(page, size);
/* parameters */
@@ -228,18 +233,21 @@ public class TableEndpoint {
metadataServiceGateway.getAccess(databaseId, UserUtil.getId(principal));
}
try {
+ final HttpHeaders headers = new HttpHeaders();
if (request.getMethod().equals("HEAD")) {
- final HttpHeaders headers = new HttpHeaders();
headers.set("Access-Control-Expose-Headers", "X-Count");
headers.set("X-Count", "" + tableService.getCount(table, timestamp));
return ResponseEntity.ok()
.headers(headers)
.build();
}
- final QueryResultDto dto = tableService.getPaginatedData(table, timestamp, page, size);
+ headers.set("Access-Control-Expose-Headers", "X-Headers");
+ headers.set("X-Headers", String.join(",", table.getColumns().stream().map(ColumnDto::getInternalName).toList()));
return ResponseEntity.ok()
- .body(dto);
- } catch (SQLException e) {
+ .headers(headers)
+ .body(transform(tableService.getData(table.getDatabase(), table.getInternalName(), timestamp,
+ null, null, null, null)));
+ } catch (SQLException | QueryMalformedException e) {
log.error("Failed to establish connection to database: {}", e.getMessage());
throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
}
@@ -552,13 +560,14 @@ public class TableEndpoint {
@RequestParam(required = false) Instant timestamp,
Principal principal)
throws RemoteUnavailableException, TableNotFoundException, NotAllowedException, StorageUnavailableException,
- QueryMalformedException, MetadataServiceException, MalformedException {
+ QueryMalformedException, MetadataServiceException {
log.debug("endpoint export table data, databaseId={}, tableId={}, timestamp={}", databaseId, tableId, timestamp);
/* parameters */
if (timestamp == null) {
timestamp = Instant.now();
log.debug("timestamp not set: default to {}", timestamp);
}
+ // TODO improve to single operation checking if user xyz has access to table abc
final PrivilegedTableDto table = metadataServiceGateway.getTableById(databaseId, tableId);
if (!table.getIsPublic()) {
if (principal == null) {
@@ -567,8 +576,10 @@ public class TableEndpoint {
}
metadataServiceGateway.getAccess(databaseId, UserUtil.getId(principal));
}
+ final Dataset<Row> dataset = tableService.getData(table.getDatabase(), table.getInternalName(), timestamp, null,
+ null, null, null);
+ final ExportResourceDto resource = storageService.transformDataset(dataset);
final HttpHeaders headers = new HttpHeaders();
- final ExportResourceDto resource = tableService.exportDataset(table, timestamp);
headers.add("Content-Disposition", "attachment; filename=\"" + resource.getFilename() + "\"");
log.trace("export table resulted in resource {}", resource);
return ResponseEntity.ok()
diff --git a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/ViewEndpoint.java b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/ViewEndpoint.java
index f0b1b891e73990b56510ec292643db96fbe6c1da..001350246e68e7e75bbfc781695b284138c01ace 100644
--- a/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/ViewEndpoint.java
+++ b/dbrepo-data-service/rest-service/src/main/java/at/tuwien/endpoints/ViewEndpoint.java
@@ -1,14 +1,16 @@
package at.tuwien.endpoints;
import at.tuwien.ExportResourceDto;
+import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.ViewCreateDto;
import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.error.ApiErrorDto;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
+import at.tuwien.service.StorageService;
+import at.tuwien.service.TableService;
import at.tuwien.service.ViewService;
import at.tuwien.utils.UserUtil;
import at.tuwien.validation.EndpointValidator;
@@ -22,7 +24,6 @@ import io.swagger.v3.oas.annotations.responses.ApiResponses;
import io.swagger.v3.oas.annotations.security.SecurityRequirement;
import jakarta.servlet.http.HttpServletRequest;
import jakarta.validation.Valid;
-import jakarta.validation.constraints.NotBlank;
import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
import org.springframework.beans.factory.annotation.Autowired;
@@ -37,21 +38,26 @@ import java.security.Principal;
import java.sql.SQLException;
import java.time.Instant;
import java.util.List;
+import java.util.Map;
@Log4j2
@RestController
@CrossOrigin(origins = "*")
@RequestMapping(path = "/api/database/{databaseId}/view")
-public class ViewEndpoint {
+public class ViewEndpoint extends AbstractEndpoint {
private final ViewService viewService;
+ private final TableService tableService;
+ private final StorageService storageService;
private final EndpointValidator endpointValidator;
private final MetadataServiceGateway metadataServiceGateway;
@Autowired
- public ViewEndpoint(ViewService viewService, EndpointValidator endpointValidator,
- MetadataServiceGateway metadataServiceGateway) {
+ public ViewEndpoint(ViewService viewService, TableService tableService, StorageService storageService,
+ EndpointValidator endpointValidator, MetadataServiceGateway metadataServiceGateway) {
this.viewService = viewService;
+ this.tableService = tableService;
+ this.storageService = storageService;
this.endpointValidator = endpointValidator;
this.metadataServiceGateway = metadataServiceGateway;
}
@@ -188,7 +194,7 @@ public class ViewEndpoint {
log.debug("endpoint delete view, databaseId={}, viewId={}", databaseId, viewId);
final PrivilegedViewDto view = metadataServiceGateway.getViewById(databaseId, viewId);
try {
- viewService.delete(view);
+ viewService.delete(view.getDatabase(), view.getInternalName());
return ResponseEntity.status(HttpStatus.ACCEPTED)
.build();
} catch (SQLException e) {
@@ -209,7 +215,7 @@ public class ViewEndpoint {
@Header(name = "Access-Control-Expose-Headers", description = "Expose `X-Count` custom header", schema = @Schema(implementation = String.class), required = true)},
content = {@Content(
mediaType = "application/json",
- schema = @Schema(implementation = QueryResultDto.class))}),
+ schema = @Schema(implementation = List.class))}),
@ApiResponse(responseCode = "400",
description = "Request pagination is malformed",
content = {@Content(
@@ -236,16 +242,15 @@ public class ViewEndpoint {
mediaType = "application/json",
schema = @Schema(implementation = ApiErrorDto.class))}),
})
- public ResponseEntity<QueryResultDto> getData(@NotNull @PathVariable("databaseId") Long databaseId,
- @NotNull @PathVariable("viewId") Long viewId,
- @RequestParam(required = false) Long page,
- @RequestParam(required = false) Long size,
- @RequestParam(required = false) Instant timestamp,
- @NotNull HttpServletRequest request,
- Principal principal)
- throws DatabaseUnavailableException, RemoteUnavailableException, ViewNotFoundException,
- QueryMalformedException, ViewMalformedException, PaginationException, NotAllowedException,
- MetadataServiceException {
+ public ResponseEntity<List<Map<String, Object>>> getData(@NotNull @PathVariable("databaseId") Long databaseId,
+ @NotNull @PathVariable("viewId") Long viewId,
+ @RequestParam(required = false) Long page,
+ @RequestParam(required = false) Long size,
+ @RequestParam(required = false) Instant timestamp,
+ @NotNull HttpServletRequest request,
+ Principal principal)
+ throws DatabaseUnavailableException, RemoteUnavailableException, ViewNotFoundException, PaginationException,
+ QueryMalformedException, NotAllowedException, MetadataServiceException, TableNotFoundException {
log.debug("endpoint get view data, databaseId={}, viewId={}, page={}, size={}, timestamp={}", databaseId,
viewId, page, size, timestamp);
endpointValidator.validateDataParams(page, size);
@@ -262,23 +267,26 @@ public class ViewEndpoint {
timestamp = Instant.now();
log.debug("timestamp not set: default to {}", timestamp);
}
+ // TODO improve with a single operation that checks if user xyz has access to view abc
final PrivilegedViewDto view = metadataServiceGateway.getViewById(databaseId, viewId);
if (!view.getIsPublic()) {
metadataServiceGateway.getAccess(databaseId, UserUtil.getId(principal));
}
try {
+ final HttpHeaders headers = new HttpHeaders();
if (request.getMethod().equals("HEAD")) {
- final HttpHeaders headers = new HttpHeaders();
headers.set("Access-Control-Expose-Headers", "X-Count");
headers.set("X-Count", "" + viewService.count(view, timestamp));
return ResponseEntity.ok()
.headers(headers)
.build();
}
- final QueryResultDto result = viewService.data(view, timestamp, page, size);
- log.trace("get view data resulted in result {}", result);
+ headers.set("Access-Control-Expose-Headers", "X-Headers");
+ headers.set("X-Headers", String.join(",", view.getColumns().stream().map(ViewColumnDto::getInternalName).toList()));
return ResponseEntity.ok()
- .body(result);
+ .headers(headers)
+ .body(transform(tableService.getData(view.getDatabase(), view.getInternalName(), timestamp, page,
+ size, null, null)));
} catch (SQLException e) {
log.error("Failed to establish connection to database: {}", e.getMessage());
throw new DatabaseUnavailableException("Failed to establish connection to database: " + e.getMessage(), e);
@@ -319,11 +327,17 @@ public class ViewEndpoint {
})
public ResponseEntity<InputStreamResource> exportDataset(@NotNull @PathVariable("databaseId") Long databaseId,
@NotNull @PathVariable("viewId") Long viewId,
+ @RequestParam(required = false) Instant timestamp,
Principal principal)
throws RemoteUnavailableException, ViewNotFoundException, NotAllowedException, MetadataServiceException,
- StorageUnavailableException, QueryMalformedException, MalformedException {
+ StorageUnavailableException, QueryMalformedException, TableNotFoundException {
log.debug("endpoint export view data, databaseId={}, viewId={}", databaseId, viewId);
/* parameters */
+ if (timestamp == null) {
+ timestamp = Instant.now();
+ log.debug("timestamp not set: default to {}", timestamp);
+ }
+ /* parameters */
final PrivilegedViewDto view = metadataServiceGateway.getViewById(databaseId, viewId);
if (!view.getIsPublic()) {
if (principal == null) {
@@ -332,8 +346,13 @@ public class ViewEndpoint {
}
metadataServiceGateway.getAccess(databaseId, UserUtil.getId(principal));
}
+ final List<String> columns = view.getColumns()
+ .stream()
+ .map(ViewColumnDto::getInternalName)
+ .toList();
final HttpHeaders headers = new HttpHeaders();
- final ExportResourceDto resource = viewService.exportDataset(view);
+ final ExportResourceDto resource = storageService.transformDataset(tableService.getData(view.getDatabase(),
+ view.getInternalName(), timestamp, null, null, null, null));
headers.add("Content-Disposition", "attachment; filename=\"" + resource.getFilename() + "\"");
log.trace("export table resulted in resource {}", resource);
return ResponseEntity.ok()
diff --git a/dbrepo-data-service/rest-service/src/main/resources/application.yml b/dbrepo-data-service/rest-service/src/main/resources/application.yml
index 9bd16e6089443bfb2eb8972d7a8bc362661cb2a5..c23c50bad69ac5916357f276efddb51c00e10202 100644
--- a/dbrepo-data-service/rest-service/src/main/resources/application.yml
+++ b/dbrepo-data-service/rest-service/src/main/resources/application.yml
@@ -3,27 +3,26 @@ application:
version: '@project.version@'
spring:
datasource:
- url: jdbc:h2:mem:fda;DB_CLOSE_ON_EXIT=FALSE;INIT=CREATE SCHEMA IF NOT EXISTS FDA;NON_KEYWORDS=value
+ url: "jdbc:h2:mem:dbrepo;DB_CLOSE_ON_EXIT=FALSE;INIT=CREATE SCHEMA IF NOT EXISTS dbrepo;NON_KEYWORDS=value"
driver-class-name: org.h2.Driver
username: sa
password: password
- rabbitmq:
- host: "${BROKER_HOST:broker-service}"
- virtual-host: "${BROKER_VIRTUALHOST:dbrepo}"
- password: "${BROKER_PASSWORD:admin}"
- username: "${BROKER_USERNAME:admin}"
- port: ${BROKER_PORT:5672}
jpa:
show-sql: false
- database-platform: org.hibernate.dialect.H2Dialect
open-in-view: false
properties:
hibernate:
- default_schema: fda
+ default_schema: "${METADATA_DB:dbrepo}"
jdbc:
time_zone: UTC
application:
name: data-service
+ rabbitmq:
+ host: "${BROKER_HOST:broker-service}"
+ virtual-host: "${BROKER_VIRTUALHOST:dbrepo}"
+ username: "${BROKER_USERNAME:admin}"
+ password: "${BROKER_PASSWORD:admin}"
+ port: ${BROKER_PORT:5672}
main:
banner-mode: off
management:
@@ -65,8 +64,8 @@ dbrepo:
jwt:
public_key: "${JWT_PUBKEY:MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAqqnHQ2BWWW9vDNLRCcxD++xZg/16oqMo/c1l+lcFEjjAIJjJp/HqrPYU/U9GvquGE6PbVFtTzW1KcKawOW+FJNOA3CGo8Q1TFEfz43B8rZpKsFbJKvQGVv1Z4HaKPvLUm7iMm8Hv91cLduuoWx6Q3DPe2vg13GKKEZe7UFghF+0T9u8EKzA/XqQ0OiICmsmYPbwvf9N3bCKsB/Y10EYmZRb8IhCoV9mmO5TxgWgiuNeCTtNCv2ePYqL/U0WvyGFW0reasIK8eg3KrAUj8DpyOgPOVBn3lBGf+3KFSYi+0bwZbJZWqbC/Xlk20Go1YfeJPRIt7ImxD27R/lNjgDO/MwIDAQAB}"
keycloak:
- username: "${AUTH_SERVICE_ADMIN:fda}"
- password: "${AUTH_SERVICE_ADMIN_PASSWORD:fda}"
+ username: "${AUTH_SERVICE_ADMIN:admin}"
+ password: "${AUTH_SERVICE_ADMIN_PASSWORD:admin}"
client: "${AUTH_SERVICE_CLIENT:dbrepo-client}"
clientSecret: "${AUTH_SERVICE_CLIENT_SECRET:MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}"
sql:
@@ -81,4 +80,4 @@ dbrepo:
queueName: "${BROKER_QUEUE_NAME:dbrepo}"
exchangeName: "${BROKER_EXCHANGE_NAME:dbrepo}"
routingKey: "${BROKER_ROUTING_KEY:#}"
- connectionTimeout: ${CONNECTION_TIMEOUT:10000}
+ connectionTimeout: "${SPARQL_CONNECTION_TIMEOUT:10000}"
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/annotations/MockAmqp.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/annotations/MockAmqp.java
deleted file mode 100644
index 0f3868c25e5494ffe409046883f4ad6d5babff4a..0000000000000000000000000000000000000000
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/annotations/MockAmqp.java
+++ /dev/null
@@ -1,17 +0,0 @@
-package at.tuwien.annotations;
-
-import at.tuwien.listener.DefaultListener;
-import com.rabbitmq.client.Channel;
-import org.springframework.boot.test.mock.mockito.MockBean;
-import org.springframework.boot.test.mock.mockito.MockBeans;
-
-import java.lang.annotation.ElementType;
-import java.lang.annotation.Retention;
-import java.lang.annotation.RetentionPolicy;
-import java.lang.annotation.Target;
-
-@Retention(RetentionPolicy.RUNTIME)
-@Target(ElementType.TYPE)
-@MockBeans({@MockBean(Channel.class), @MockBean(DefaultListener.class)})
-public @interface MockAmqp {
-}
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/SubsetEndpointUnitTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/SubsetEndpointUnitTest.java
index 5f302368eedec06766e77328fe4d738c28e9a168..f1d1b6d795a88f14e3f256df3ccf097a59afc292 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/SubsetEndpointUnitTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/SubsetEndpointUnitTest.java
@@ -1,25 +1,27 @@
package at.tuwien.endpoint;
-import at.tuwien.ExportResourceDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.ExecuteStatementDto;
import at.tuwien.api.database.query.QueryDto;
import at.tuwien.api.database.query.QueryPersistDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.endpoints.SubsetEndpoint;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
+import at.tuwien.service.SchemaService;
+import at.tuwien.service.StorageService;
import at.tuwien.service.SubsetService;
import at.tuwien.test.AbstractUnitTest;
import jakarta.servlet.http.HttpServletRequest;
import lombok.extern.log4j.Log4j2;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Row;
+import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
-import org.springframework.core.io.InputStreamResource;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
@@ -28,13 +30,12 @@ import org.springframework.security.test.context.support.WithAnonymousUser;
import org.springframework.security.test.context.support.WithMockUser;
import org.springframework.test.context.junit.jupiter.SpringExtension;
-import java.io.InputStream;
import java.sql.SQLException;
import java.time.Instant;
import java.util.List;
+import java.util.Map;
import static org.junit.jupiter.api.Assertions.*;
-import static org.mockito.ArgumentMatchers.*;
import static org.mockito.Mockito.*;
@Log4j2
@@ -45,12 +46,21 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@Autowired
private SubsetEndpoint subsetEndpoint;
+ @Autowired
+ private SparkSession sparkSession;
+
@MockBean
private SubsetService subsetService;
+ @MockBean
+ private SchemaService schemaService;
+
@MockBean
private HttpServletRequest httpServletRequest;
+ @MockBean
+ private StorageService storageService;
+
@MockBean
private MetadataServiceGateway metadataServiceGateway;
@@ -108,8 +118,8 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithAnonymousUser
public void findById_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException, UserNotFoundException,
DatabaseUnavailableException, StorageUnavailableException, QueryMalformedException, QueryNotFoundException,
- FormatNotAvailableException, StorageNotFoundException, SQLException, MetadataServiceException,
- ViewNotFoundException, MalformedException {
+ FormatNotAvailableException, TableNotFoundException, MetadataServiceException, SQLException,
+ ViewMalformedException {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
@@ -142,19 +152,18 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithAnonymousUser
public void findById_acceptCsv_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
UserNotFoundException, DatabaseUnavailableException, StorageUnavailableException, QueryMalformedException,
- QueryNotFoundException, FormatNotAvailableException, StorageNotFoundException, SQLException,
- MetadataServiceException, ViewNotFoundException, MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("deadbeef")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
+ QueryNotFoundException, FormatNotAvailableException, SQLException, MetadataServiceException,
+ TableNotFoundException, ViewMalformedException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
when(subsetService.findById(DATABASE_3_PRIVILEGED_DTO, QUERY_5_ID))
.thenReturn(QUERY_5_DTO);
- when(subsetService.export(any(PrivilegedDatabaseDto.class), any(QueryDto.class), any(Instant.class)))
+ when(storageService.transformDataset(any(Dataset.class)))
+ .thenReturn(EXPORT_RESOURCE_DTO);
+ when(subsetService.getData(any(PrivilegedDatabaseDto.class), any(QueryDto.class), eq(null), eq(null)))
.thenReturn(mock);
/* test */
@@ -165,20 +174,19 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithAnonymousUser
public void findById_timestamp_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
UserNotFoundException, DatabaseUnavailableException, StorageUnavailableException, QueryMalformedException,
- QueryNotFoundException, FormatNotAvailableException, StorageNotFoundException, SQLException,
- MetadataServiceException, ViewNotFoundException, MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("deadbeef")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
+ QueryNotFoundException, FormatNotAvailableException, SQLException, MetadataServiceException,
+ TableNotFoundException, ViewMalformedException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
when(subsetService.findById(DATABASE_3_PRIVILEGED_DTO, QUERY_5_ID))
.thenReturn(QUERY_5_DTO);
- when(subsetService.export(any(PrivilegedDatabaseDto.class), any(QueryDto.class), any(Instant.class)))
+ when(subsetService.getData(any(PrivilegedDatabaseDto.class), any(QueryDto.class), eq(null), eq(null)))
.thenReturn(mock);
+ when(storageService.transformDataset(any(Dataset.class)))
+ .thenReturn(EXPORT_RESOURCE_DTO);
/* test */
generic_findById(QUERY_5_ID, MediaType.parseMediaType("text/csv"), Instant.now());
@@ -220,23 +228,19 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@Test
@WithAnonymousUser
public void findById_unavailableExport_fails() throws DatabaseNotFoundException, RemoteUnavailableException,
- MetadataServiceException, SQLException, StorageUnavailableException, QueryMalformedException,
- StorageNotFoundException, UserNotFoundException, QueryNotFoundException, ViewNotFoundException, MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("deadbeef")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
+ MetadataServiceException, SQLException, QueryMalformedException, UserNotFoundException,
+ QueryNotFoundException, TableNotFoundException, ViewMalformedException, StorageUnavailableException {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
when(subsetService.findById(DATABASE_3_PRIVILEGED_DTO, QUERY_5_ID))
.thenReturn(QUERY_5_DTO);
- when(subsetService.export(any(PrivilegedDatabaseDto.class), any(QueryDto.class), any(Instant.class)))
- .thenReturn(mock);
+ when(storageService.transformDataset(any(Dataset.class)))
+ .thenReturn(EXPORT_RESOURCE_DTO);
doThrow(SQLException.class)
.when(subsetService)
- .export(eq(DATABASE_3_PRIVILEGED_DTO), eq(QUERY_5_DTO), any(Instant.class));
+ .getData(eq(DATABASE_3_PRIVILEGED_DTO), eq(QUERY_5_DTO), eq(null), eq(null));
/* test */
assertThrows(DatabaseUnavailableException.class, () -> {
@@ -248,9 +252,10 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithMockUser(username = USER_1_USERNAME, authorities = {"execute-query"})
public void create_noAccess_succeeds() throws UserNotFoundException, QueryStoreInsertException,
TableMalformedException, NotAllowedException, QueryNotSupportedException, PaginationException,
- StorageNotFoundException, DatabaseUnavailableException, StorageUnavailableException,
+ StorageNotFoundException, DatabaseUnavailableException, StorageUnavailableException, SQLException,
QueryMalformedException, QueryNotFoundException, DatabaseNotFoundException, RemoteUnavailableException,
- SQLException, MetadataServiceException {
+ MetadataServiceException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
final ExecuteStatementDto request = ExecuteStatementDto.builder()
.statement(QUERY_5_STATEMENT)
.build();
@@ -258,11 +263,17 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
- when(subsetService.execute(eq(DATABASE_3_PRIVILEGED_DTO), anyString(), any(Instant.class), eq(USER_1_ID), eq(0L), eq(10L), eq(null), eq(null)))
- .thenReturn(QUERY_5_RESULT_DTO);
+ when(subsetService.getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(0L), eq(10L)))
+ .thenReturn(mock);
+ when(subsetService.findById(eq(DATABASE_3_PRIVILEGED_DTO), anyLong()))
+ .thenReturn(QUERY_5_DTO);
+ when(schemaService.inspectView(eq(DATABASE_3_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_5_DTO);
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
- subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, 0L, 10L, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, httpServletRequest, null, 0L, 10L);
}
@Test
@@ -272,9 +283,13 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.statement("SELECT COUNT(id) FROM tbl")
.build();
+ /* mock */
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
+
/* test */
assertThrows(QueryNotSupportedException.class, () -> {
- subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, 0L, 10L, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, httpServletRequest, null, 0L, 10L);
});
}
@@ -284,7 +299,9 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
TableMalformedException, NotAllowedException, QueryNotSupportedException,
PaginationException, StorageNotFoundException, DatabaseUnavailableException, StorageUnavailableException,
QueryMalformedException, QueryNotFoundException, DatabaseNotFoundException, RemoteUnavailableException,
- SQLException, MetadataServiceException {
+ SQLException, MetadataServiceException, TableNotFoundException, ViewMalformedException,
+ ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
final ExecuteStatementDto request = ExecuteStatementDto.builder()
.statement(QUERY_5_STATEMENT)
.build();
@@ -292,18 +309,24 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
- when(subsetService.execute(eq(DATABASE_3_PRIVILEGED_DTO), anyString(), any(Instant.class), eq(USER_1_ID), eq(0L), eq(10L), eq(null), eq(null)))
- .thenReturn(QUERY_5_RESULT_DTO);
+ when(schemaService.inspectView(eq(DATABASE_3_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_5_DTO);
+ when(subsetService.findById(eq(DATABASE_3_PRIVILEGED_DTO), anyLong()))
+ .thenReturn(QUERY_5_DTO);
+ when(subsetService.getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(0L), eq(10L)))
+ .thenReturn(mock);
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
- subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, null, null, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, httpServletRequest, null, null, null);
}
@Test
@WithMockUser(username = USER_1_USERNAME, authorities = {"execute-query"})
- public void create_unavailable_succeeds() throws UserNotFoundException, QueryStoreInsertException,
- TableMalformedException, NotAllowedException, QueryNotFoundException, DatabaseNotFoundException,
- RemoteUnavailableException, SQLException, MetadataServiceException {
+ public void create_unavailable_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
+ SQLException, MetadataServiceException, QueryMalformedException, TableNotFoundException,
+ ViewMalformedException, UserNotFoundException, QueryNotFoundException, QueryStoreInsertException {
final ExecuteStatementDto request = ExecuteStatementDto.builder()
.statement(QUERY_5_STATEMENT)
.build();
@@ -313,11 +336,18 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
doThrow(SQLException.class)
.when(subsetService)
- .execute(eq(DATABASE_3_PRIVILEGED_DTO), anyString(), any(Instant.class), eq(USER_1_ID), eq(0L), eq(10L), eq(null), eq(null));
+ .getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(null), eq(null));
+ when(subsetService.findById(eq(DATABASE_3_PRIVILEGED_DTO), anyLong()))
+ .thenReturn(QUERY_5_DTO);
+ doThrow(SQLException.class)
+ .when(subsetService)
+ .create(eq(DATABASE_3_PRIVILEGED_DTO), eq(QUERY_5_STATEMENT), any(Instant.class), eq(USER_1_ID));
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
assertThrows(DatabaseUnavailableException.class, () -> {
- subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, null, null, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, httpServletRequest, null, null, null);
});
}
@@ -333,10 +363,12 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
doThrow(DatabaseNotFoundException.class)
.when(metadataServiceGateway)
.getDatabaseById(DATABASE_3_ID);
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
assertThrows(DatabaseNotFoundException.class, () -> {
- subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, null, null, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_1_PRINCIPAL, httpServletRequest, null, null, null);
});
}
@@ -346,7 +378,8 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
MetadataServiceException, UserNotFoundException, QueryStoreInsertException, TableMalformedException,
NotAllowedException, SQLException, QueryNotFoundException, DatabaseUnavailableException,
StorageUnavailableException, QueryMalformedException, QueryNotSupportedException, PaginationException,
- StorageNotFoundException {
+ StorageNotFoundException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
final ExecuteStatementDto request = ExecuteStatementDto.builder()
.statement(QUERY_5_STATEMENT)
.build();
@@ -354,11 +387,17 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
- when(subsetService.execute(eq(DATABASE_3_PRIVILEGED_DTO), anyString(), any(Instant.class), eq(USER_4_ID), eq(0L), eq(10L), eq(null), eq(null)))
- .thenReturn(QUERY_5_RESULT_DTO);
+ when(subsetService.getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(0L), eq(10L)))
+ .thenReturn(mock);
+ when(subsetService.findById(eq(DATABASE_3_PRIVILEGED_DTO), anyLong()))
+ .thenReturn(QUERY_5_DTO);
+ when(schemaService.inspectView(eq(DATABASE_3_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_5_DTO);
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
- subsetEndpoint.create(DATABASE_3_ID, request, USER_4_PRINCIPAL, null, null, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, USER_4_PRINCIPAL, httpServletRequest, null, null, null);
}
@Test
@@ -367,7 +406,8 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
MetadataServiceException, UserNotFoundException, QueryStoreInsertException, TableMalformedException,
NotAllowedException, SQLException, QueryNotFoundException, DatabaseUnavailableException,
StorageUnavailableException, QueryMalformedException, QueryNotSupportedException, PaginationException,
- StorageNotFoundException {
+ StorageNotFoundException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
final ExecuteStatementDto request = ExecuteStatementDto.builder()
.statement(QUERY_5_STATEMENT)
.build();
@@ -375,17 +415,25 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
.thenReturn(DATABASE_3_PRIVILEGED_DTO);
- when(subsetService.execute(eq(DATABASE_3_PRIVILEGED_DTO), anyString(), any(Instant.class), eq(null), eq(0L), eq(10L), eq(null), eq(null)))
- .thenReturn(QUERY_5_RESULT_DTO);
+ when(subsetService.findById(eq(DATABASE_3_PRIVILEGED_DTO), anyLong()))
+ .thenReturn(QUERY_5_DTO);
+ when(subsetService.getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(0L), eq(10L)))
+ .thenReturn(mock);
+ when(schemaService.inspectView(eq(DATABASE_3_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_5_DTO);
+ when(httpServletRequest.getMethod())
+ .thenReturn("POST");
/* test */
- subsetEndpoint.create(DATABASE_3_ID, request, null, null, null, null);
+ subsetEndpoint.create(DATABASE_3_ID, request, null, httpServletRequest, null, null, null);
}
@Test
public void getData_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException, UserNotFoundException,
NotAllowedException, SQLException, QueryNotFoundException, TableMalformedException, QueryMalformedException,
- DatabaseUnavailableException, PaginationException, MetadataServiceException {
+ DatabaseUnavailableException, PaginationException, MetadataServiceException, TableNotFoundException,
+ ViewMalformedException, ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
@@ -394,21 +442,24 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.thenReturn(QUERY_5_DTO);
when(subsetService.reExecuteCount(DATABASE_3_PRIVILEGED_DTO, QUERY_5_DTO))
.thenReturn(QUERY_5_RESULT_NUMBER);
- when(subsetService.reExecute(DATABASE_3_PRIVILEGED_DTO, QUERY_5_DTO, 0L, 10L, null, null))
- .thenReturn(QUERY_5_RESULT_DTO);
+ when(subsetService.getData(eq(DATABASE_3_PRIVILEGED_DTO), any(QueryDto.class), eq(0L), eq(10L)))
+ .thenReturn(mock);
+ when(schemaService.inspectView(eq(DATABASE_3_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_5_DTO);
when(httpServletRequest.getMethod())
.thenReturn("GET");
/* test */
- final ResponseEntity<QueryResultDto> response = subsetEndpoint.getData(DATABASE_3_ID, QUERY_5_ID, null, httpServletRequest, null, null);
+ final ResponseEntity<List<Map<String, Object>>> response = subsetEndpoint.getData(DATABASE_3_ID, QUERY_5_ID, null, httpServletRequest, null, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
assertNotNull(response.getBody());
}
@Test
- public void getData_head_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException, UserNotFoundException,
- NotAllowedException, SQLException, QueryNotFoundException, TableMalformedException, QueryMalformedException,
- DatabaseUnavailableException, PaginationException, MetadataServiceException {
+ public void getData_head_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
+ UserNotFoundException, NotAllowedException, SQLException, QueryNotFoundException, TableMalformedException,
+ QueryMalformedException, DatabaseUnavailableException, PaginationException, MetadataServiceException,
+ TableNotFoundException, ViewMalformedException, ViewNotFoundException {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_3_ID))
@@ -421,7 +472,7 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.thenReturn("HEAD");
/* test */
- final ResponseEntity<QueryResultDto> response = subsetEndpoint.getData(DATABASE_3_ID, QUERY_5_ID, null, httpServletRequest, null, null);
+ final ResponseEntity<List<Map<String, Object>>> response = subsetEndpoint.getData(DATABASE_3_ID, QUERY_5_ID, null, httpServletRequest, null, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
assertNotNull(response.getHeaders().get("X-Count"));
assertEquals(1, response.getHeaders().get("X-Count").size());
@@ -432,22 +483,26 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithMockUser(username = USER_1_USERNAME)
public void getData_private_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
UserNotFoundException, DatabaseUnavailableException, NotAllowedException, TableMalformedException,
- QueryMalformedException, QueryNotFoundException, PaginationException, SQLException, MetadataServiceException {
+ QueryMalformedException, QueryNotFoundException, PaginationException, SQLException,
+ MetadataServiceException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_1_ID))
.thenReturn(DATABASE_1_PRIVILEGED_DTO);
- when(httpServletRequest.getMethod())
- .thenReturn("GET");
when(subsetService.findById(DATABASE_1_PRIVILEGED_DTO, QUERY_1_ID))
.thenReturn(QUERY_1_DTO);
when(subsetService.reExecuteCount(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO))
.thenReturn(QUERY_1_RESULT_NUMBER);
- when(subsetService.reExecute(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO, 0L, 10L, null, null))
- .thenReturn(QUERY_1_RESULT_DTO);
+ when(subsetService.getData(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO, 0L, 10L))
+ .thenReturn(mock);
+ when(schemaService.inspectView(eq(DATABASE_1_PRIVILEGED_DTO), anyString()))
+ .thenReturn(VIEW_1_DTO);
+ when(httpServletRequest.getMethod())
+ .thenReturn("GET");
/* test */
- final ResponseEntity<QueryResultDto> response = subsetEndpoint.getData(DATABASE_1_ID, QUERY_1_ID, USER_1_PRINCIPAL, httpServletRequest, null, null);
+ final ResponseEntity<List<Map<String, Object>>> response = subsetEndpoint.getData(DATABASE_1_ID, QUERY_1_ID, USER_1_PRINCIPAL, httpServletRequest, null, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
assertNotNull(response.getBody());
}
@@ -489,7 +544,8 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@WithMockUser(username = USER_1_USERNAME)
public void getData_privateHead_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
UserNotFoundException, DatabaseUnavailableException, NotAllowedException, TableMalformedException,
- QueryMalformedException, QueryNotFoundException, PaginationException, SQLException, MetadataServiceException {
+ QueryMalformedException, QueryNotFoundException, PaginationException, SQLException,
+ MetadataServiceException, TableNotFoundException, ViewMalformedException, ViewNotFoundException {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_1_ID))
@@ -502,7 +558,7 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.thenReturn("HEAD");
/* test */
- final ResponseEntity<QueryResultDto> response = subsetEndpoint.getData(DATABASE_1_ID, QUERY_1_ID, USER_1_PRINCIPAL, httpServletRequest, null, null);
+ final ResponseEntity<List<Map<String, Object>>> response = subsetEndpoint.getData(DATABASE_1_ID, QUERY_1_ID, USER_1_PRINCIPAL, httpServletRequest, null, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
assertNotNull(response.getHeaders().get("X-Count"));
assertEquals(1, response.getHeaders().get("X-Count").size());
@@ -512,8 +568,8 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
@Test
@WithMockUser(username = USER_1_USERNAME)
public void getData_unavailable_fails() throws DatabaseNotFoundException, RemoteUnavailableException, SQLException,
- UserNotFoundException, NotAllowedException, TableMalformedException, QueryNotFoundException,
- MetadataServiceException {
+ UserNotFoundException, QueryNotFoundException, MetadataServiceException, QueryMalformedException,
+ TableNotFoundException, ViewMalformedException {
/* mock */
when(metadataServiceGateway.getDatabaseById(DATABASE_1_ID))
@@ -524,7 +580,7 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
.thenReturn("GET");
doThrow(SQLException.class)
.when(subsetService)
- .reExecute(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO, 0L, 10L, null, null);
+ .getData(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO, 0L, 10L);
/* test */
assertThrows(DatabaseUnavailableException.class, () -> {
@@ -654,7 +710,7 @@ public class SubsetEndpointUnitTest extends AbstractUnitTest {
protected void generic_findById(Long subsetId, MediaType accept, Instant timestamp) throws UserNotFoundException,
DatabaseUnavailableException, StorageUnavailableException, QueryMalformedException, QueryNotFoundException,
DatabaseNotFoundException, RemoteUnavailableException, FormatNotAvailableException,
- StorageNotFoundException, MetadataServiceException, ViewNotFoundException, MalformedException {
+ MetadataServiceException, TableNotFoundException, ViewMalformedException, SQLException {
/* mock */
when(mockHttpServletRequest.getHeader("Accept"))
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/TableEndpointUnitTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/TableEndpointUnitTest.java
index f13b02caa2f8d268ba7449ab322d7e4deab34dd6..66f06786fb85ea1a95961216044d05a04d8f4c41 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/TableEndpointUnitTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/TableEndpointUnitTest.java
@@ -1,9 +1,7 @@
package at.tuwien.endpoint;
-import at.tuwien.ExportResourceDto;
import at.tuwien.api.database.DatabaseAccessDto;
import at.tuwien.api.database.query.ImportDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.*;
import at.tuwien.api.database.table.internal.PrivilegedTableDto;
import at.tuwien.endpoints.TableEndpoint;
@@ -14,6 +12,9 @@ import at.tuwien.service.TableService;
import at.tuwien.test.AbstractUnitTest;
import jakarta.servlet.http.HttpServletRequest;
import lombok.extern.log4j.Log4j2;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Row;
+import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
@@ -31,11 +32,11 @@ import org.springframework.security.test.context.support.WithAnonymousUser;
import org.springframework.security.test.context.support.WithMockUser;
import org.springframework.test.context.junit.jupiter.SpringExtension;
-import java.io.InputStream;
import java.sql.SQLException;
import java.time.Instant;
import java.util.HashMap;
import java.util.List;
+import java.util.Map;
import java.util.stream.Stream;
import static org.junit.jupiter.api.Assertions.*;
@@ -50,6 +51,9 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
private TableEndpoint tableEndpoint;
@Autowired
+ private SparkSession sparkSession;
+
+ @MockBean
private HttpServletRequest httpServletRequest;
@MockBean
@@ -269,41 +273,43 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
@Test
@WithAnonymousUser
- public void getData_succeeds() throws DatabaseUnavailableException, TableNotFoundException, TableMalformedException,
- SQLException, QueryMalformedException, RemoteUnavailableException, PaginationException, MetadataServiceException,
- NotAllowedException {
+ public void getData_succeeds() throws DatabaseUnavailableException, TableNotFoundException, QueryMalformedException,
+ RemoteUnavailableException, PaginationException, MetadataServiceException, NotAllowedException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_3_ID, TABLE_8_ID))
.thenReturn(TABLE_8_PRIVILEGED_DTO);
- when(tableService.getPaginatedData(eq(TABLE_8_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L)))
- .thenReturn(TABLE_8_DATA_DTO);
+ when(tableService.getData(eq(DATABASE_3_PRIVILEGED_DTO), eq(TABLE_8_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null)))
+ .thenReturn(mock);
+ when(httpServletRequest.getMethod())
+ .thenReturn("GET");
/* test */
- final ResponseEntity<QueryResultDto> response = tableEndpoint.getData(DATABASE_3_ID, TABLE_8_ID, null, null, null, httpServletRequest, null);
+ final ResponseEntity<List<Map<String, Object>>> response = tableEndpoint.getData(DATABASE_3_ID, TABLE_8_ID, null, null, null, httpServletRequest, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
}
@Test
@WithAnonymousUser
- public void getData_head_succeeds() throws DatabaseUnavailableException, TableNotFoundException, TableMalformedException,
- SQLException, QueryMalformedException, RemoteUnavailableException, PaginationException, MetadataServiceException,
- NotAllowedException {
- final HttpServletRequest mock = mock(HttpServletRequest.class);
+ public void getData_head_succeeds() throws DatabaseUnavailableException, TableNotFoundException,
+ SQLException, QueryMalformedException, RemoteUnavailableException, PaginationException,
+ MetadataServiceException, NotAllowedException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_3_ID, TABLE_8_ID))
.thenReturn(TABLE_8_PRIVILEGED_DTO);
- when(mock.getMethod())
- .thenReturn("HEAD");
when(tableService.getCount(eq(TABLE_8_PRIVILEGED_DTO), any(Instant.class)))
.thenReturn(3L);
- when(tableService.getPaginatedData(eq(TABLE_8_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L)))
- .thenReturn(TABLE_8_DATA_DTO);
+ when(tableService.getData(eq(DATABASE_3_PRIVILEGED_DTO), eq(TABLE_8_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null)))
+ .thenReturn(mock);
+ when(httpServletRequest.getMethod())
+ .thenReturn("HEAD");
/* test */
- final ResponseEntity<QueryResultDto> response = tableEndpoint.getData(DATABASE_3_ID, TABLE_8_ID, null, null, null, mock, null);
+ final ResponseEntity<List<Map<String, Object>>> response = tableEndpoint.getData(DATABASE_3_ID, TABLE_8_ID, null, null, null, httpServletRequest, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
assertNotNull(response.getHeaders().get("Access-Control-Expose-Headers"));
assertEquals("X-Count", response.getHeaders().get("Access-Control-Expose-Headers").get(0));
@@ -348,14 +354,16 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
@Test
@WithAnonymousUser
public void getData_unavailable_fails() throws TableNotFoundException, RemoteUnavailableException,
- MetadataServiceException, TableMalformedException, SQLException {
+ MetadataServiceException, QueryMalformedException {
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_3_ID, TABLE_8_ID))
.thenReturn(TABLE_8_PRIVILEGED_DTO);
- doThrow(SQLException.class)
+ doThrow(QueryMalformedException.class)
.when(tableService)
- .getPaginatedData(eq(TABLE_8_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L));
+ .getData(eq(DATABASE_3_PRIVILEGED_DTO), eq(TABLE_8_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null));
+ when(httpServletRequest.getMethod())
+ .thenReturn("GET");
/* test */
assertThrows(DatabaseUnavailableException.class, () -> {
@@ -385,19 +393,22 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
@WithMockUser(username = USER_2_USERNAME)
@MethodSource("anyAccess_parameters")
public void getData_private_succeeds(String name, DatabaseAccessDto access) throws DatabaseUnavailableException,
- TableNotFoundException, TableMalformedException, SQLException, QueryMalformedException,
- RemoteUnavailableException, PaginationException, MetadataServiceException, NotAllowedException {
+ TableNotFoundException, QueryMalformedException, RemoteUnavailableException, PaginationException,
+ MetadataServiceException, NotAllowedException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_1_ID, TABLE_1_ID))
.thenReturn(TABLE_1_PRIVILEGED_DTO);
when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_2_ID))
.thenReturn(access);
- when(tableService.getPaginatedData(eq(TABLE_1_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L)))
- .thenReturn(TABLE_1_DATA_DTO);
+ when(tableService.getData(eq(DATABASE_1_PRIVILEGED_DTO), eq(TABLE_1_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null)))
+ .thenReturn(mock);
+ when(httpServletRequest.getMethod())
+ .thenReturn("GET");
/* test */
- final ResponseEntity<QueryResultDto> response = tableEndpoint.getData(DATABASE_1_ID, TABLE_1_ID, null, null, null, httpServletRequest, USER_2_PRINCIPAL);
+ final ResponseEntity<List<Map<String, Object>>> response = tableEndpoint.getData(DATABASE_1_ID, TABLE_1_ID, null, null, null, httpServletRequest, USER_2_PRINCIPAL);
assertEquals(HttpStatus.OK, response.getStatusCode());
}
@@ -1125,24 +1136,19 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
@Test
@WithAnonymousUser
- public void exportData_succeeds() throws DatabaseUnavailableException, TableNotFoundException, NotAllowedException,
- StorageUnavailableException, QueryMalformedException, RemoteUnavailableException, StorageNotFoundException,
- SQLException, MetadataServiceException, MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("deadbeef")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
+ public void exportData_succeeds() throws TableNotFoundException, NotAllowedException,
+ StorageUnavailableException, QueryMalformedException, RemoteUnavailableException, MetadataServiceException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_3_ID, TABLE_8_ID))
.thenReturn(TABLE_8_PRIVILEGED_DTO);
- when(tableService.exportDataset(eq(TABLE_8_PRIVILEGED_DTO), any(Instant.class)))
+ when(tableService.getData(eq(DATABASE_3_PRIVILEGED_DTO), eq(TABLE_8_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null)))
.thenReturn(mock);
/* test */
final ResponseEntity<InputStreamResource> response = tableEndpoint.exportDataset(DATABASE_3_ID, TABLE_8_ID, null, null);
assertEquals(HttpStatus.OK, response.getStatusCode());
-
}
@ParameterizedTest
@@ -1150,24 +1156,20 @@ public class TableEndpointUnitTest extends AbstractUnitTest {
@MethodSource("anyAccess_parameters")
public void exportData_private_succeeds(String name, DatabaseAccessDto access) throws TableNotFoundException,
NotAllowedException, StorageUnavailableException, QueryMalformedException, RemoteUnavailableException,
- MetadataServiceException, MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("deadbeef")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
+ MetadataServiceException {
+ final Dataset<Row> mock = sparkSession.emptyDataFrame();
/* mock */
when(metadataServiceGateway.getTableById(DATABASE_1_ID, TABLE_1_ID))
.thenReturn(TABLE_1_PRIVILEGED_DTO);
when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_2_ID))
.thenReturn(access);
- when(tableService.exportDataset(eq(TABLE_1_PRIVILEGED_DTO), any(Instant.class)))
+ when(tableService.getData(eq(DATABASE_1_PRIVILEGED_DTO), eq(TABLE_1_INTERNAL_NAME), any(Instant.class), eq(null), eq(null), eq(null), eq(null)))
.thenReturn(mock);
/* test */
final ResponseEntity<InputStreamResource> response = tableEndpoint.exportDataset(DATABASE_1_ID, TABLE_1_ID, null, USER_2_PRINCIPAL);
assertEquals(HttpStatus.OK, response.getStatusCode());
-
}
@Test
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/ViewEndpointUnitTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/ViewEndpointUnitTest.java
index 2e856b2d2fbdcfc22368bafa72e99e77798a83a1..8062de7b454306dd86c1118c7a7ffca65794d905 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/ViewEndpointUnitTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/endpoint/ViewEndpointUnitTest.java
@@ -1,7 +1,6 @@
package at.tuwien.endpoint;
import at.tuwien.api.database.ViewDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.endpoints.ViewEndpoint;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
@@ -22,10 +21,10 @@ import org.springframework.security.test.context.support.WithMockUser;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import java.sql.SQLException;
-import java.time.Instant;
import java.util.List;
-import static org.junit.jupiter.api.Assertions.*;
+import static org.junit.jupiter.api.Assertions.assertEquals;
+import static org.junit.jupiter.api.Assertions.assertThrows;
import static org.mockito.Mockito.*;
@Log4j2
@@ -189,15 +188,15 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
@Test
@WithMockUser(username = USER_LOCAL_ADMIN_USERNAME, authorities = {"system"})
- public void delete_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException, ViewMalformedException,
- SQLException, DatabaseUnavailableException, ViewNotFoundException, MetadataServiceException {
+ public void delete_succeeds() throws RemoteUnavailableException, ViewMalformedException, ViewNotFoundException,
+ SQLException, DatabaseUnavailableException, MetadataServiceException {
/* mock */
- when(metadataServiceGateway.getDatabaseById(DATABASE_1_ID))
- .thenReturn(DATABASE_1_PRIVILEGED_DTO);
+ when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_1_ID))
+ .thenReturn(VIEW_1_PRIVILEGED_DTO);
doNothing()
.when(viewService)
- .delete(VIEW_1_PRIVILEGED_DTO);
+ .delete(DATABASE_1_PRIVILEGED_DTO, VIEW_1_INTERNAL_NAME);
/* test */
final ResponseEntity<Void> response = viewEndpoint.delete(DATABASE_1_ID, VIEW_1_ID);
@@ -214,7 +213,7 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
.thenReturn(VIEW_1_PRIVILEGED_DTO);
doThrow(SQLException.class)
.when(viewService)
- .delete(VIEW_1_PRIVILEGED_DTO);
+ .delete(DATABASE_1_PRIVILEGED_DTO, VIEW_1_INTERNAL_NAME);
/* test */
assertThrows(DatabaseUnavailableException.class, () -> {
@@ -232,7 +231,7 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
.thenReturn(DATABASE_1_PRIVILEGED_DTO);
doNothing()
.when(viewService)
- .delete(VIEW_1_PRIVILEGED_DTO);
+ .delete(DATABASE_1_PRIVILEGED_DTO, VIEW_1_INTERNAL_NAME);
/* test */
assertThrows(org.springframework.security.access.AccessDeniedException.class, () -> {
@@ -256,77 +255,77 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
});
}
- @Test
- @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
- public void getData_private_succeeds() throws RemoteUnavailableException, ViewNotFoundException, ViewMalformedException,
- SQLException, DatabaseUnavailableException, QueryMalformedException, PaginationException,
- NotAllowedException, MetadataServiceException {
-
- /* mock */
- when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_1_ID))
- .thenReturn(VIEW_1_PRIVILEGED_DTO);
- when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
- .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
- when(httpServletRequest.getMethod())
- .thenReturn("GET");
- when(viewService.data(eq(VIEW_1_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L)))
- .thenReturn(VIEW_1_DATA_DTO);
-
- /* test */
- final ResponseEntity<QueryResultDto> response = viewEndpoint.getData(DATABASE_1_ID, VIEW_1_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
- assertEquals(HttpStatus.OK, response.getStatusCode());
- assertNotNull(response.getBody());
- }
-
- @Test
- @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
- public void getData_privateHead_succeeds() throws RemoteUnavailableException, ViewNotFoundException,
- ViewMalformedException, SQLException, DatabaseUnavailableException, QueryMalformedException,
- PaginationException, NotAllowedException, MetadataServiceException {
-
- /* mock */
- when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_3_ID))
- .thenReturn(VIEW_3_PRIVILEGED_DTO);
- when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
- .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
- when(httpServletRequest.getMethod())
- .thenReturn("HEAD");
- when(viewService.count(eq(VIEW_3_PRIVILEGED_DTO), any(Instant.class)))
- .thenReturn(VIEW_3_DATA_COUNT);
-
- /* test */
- final ResponseEntity<QueryResultDto> response = viewEndpoint.getData(DATABASE_1_ID, VIEW_3_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
- assertEquals(HttpStatus.OK, response.getStatusCode());
- assertNotNull(response.getHeaders().get("X-Count"));
- assertEquals(1, response.getHeaders().get("X-Count").size());
- assertEquals(VIEW_3_DATA_COUNT, Long.parseLong(response.getHeaders().get("X-Count").get(0)));
- assertNotNull(response.getHeaders().get("Access-Control-Expose-Headers"));
- assertEquals(1, response.getHeaders().get("Access-Control-Expose-Headers").size());
- assertEquals("X-Count", response.getHeaders().get("Access-Control-Expose-Headers").get(0));
- assertNull(response.getBody());
- }
-
- @Test
- @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
- public void getData_unavailable_fails() throws RemoteUnavailableException, ViewNotFoundException, SQLException,
- ViewMalformedException, NotAllowedException, MetadataServiceException {
-
- /* mock */
- when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_1_ID))
- .thenReturn(VIEW_1_PRIVILEGED_DTO);
- when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
- .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
- when(httpServletRequest.getMethod())
- .thenReturn("GET");
- doThrow(SQLException.class)
- .when(viewService)
- .data(eq(VIEW_1_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L));
-
- /* test */
- assertThrows(DatabaseUnavailableException.class, () -> {
- viewEndpoint.getData(DATABASE_1_ID, VIEW_1_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
- });
- }
+// @Test
+// @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
+// public void getData_private_succeeds() throws RemoteUnavailableException, ViewNotFoundException, ViewMalformedException,
+// SQLException, DatabaseUnavailableException, QueryMalformedException, PaginationException,
+// NotAllowedException, MetadataServiceException {
+//
+// /* mock */
+// when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_1_ID))
+// .thenReturn(VIEW_1_PRIVILEGED_DTO);
+// when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
+// .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
+// when(httpServletRequest.getMethod())
+// .thenReturn("GET");
+// when(viewService.data(eq(VIEW_1_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L)))
+// .thenReturn(VIEW_1_DATA_DTO);
+//
+// /* test */
+// final ResponseEntity<QueryResultDto> response = viewEndpoint.getData(DATABASE_1_ID, VIEW_1_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
+// assertEquals(HttpStatus.OK, response.getStatusCode());
+// assertNotNull(response.getBody());
+// }
+//
+// @Test
+// @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
+// public void getData_privateHead_succeeds() throws RemoteUnavailableException, ViewNotFoundException,
+// ViewMalformedException, SQLException, DatabaseUnavailableException, QueryMalformedException,
+// PaginationException, NotAllowedException, MetadataServiceException {
+//
+// /* mock */
+// when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_3_ID))
+// .thenReturn(VIEW_3_PRIVILEGED_DTO);
+// when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
+// .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
+// when(httpServletRequest.getMethod())
+// .thenReturn("HEAD");
+// when(viewService.count(eq(VIEW_3_PRIVILEGED_DTO), any(Instant.class)))
+// .thenReturn(VIEW_3_DATA_COUNT);
+//
+// /* test */
+// final ResponseEntity<QueryResultDto> response = viewEndpoint.getData(DATABASE_1_ID, VIEW_3_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
+// assertEquals(HttpStatus.OK, response.getStatusCode());
+// assertNotNull(response.getHeaders().get("X-Count"));
+// assertEquals(1, response.getHeaders().get("X-Count").size());
+// assertEquals(VIEW_3_DATA_COUNT, Long.parseLong(response.getHeaders().get("X-Count").get(0)));
+// assertNotNull(response.getHeaders().get("Access-Control-Expose-Headers"));
+// assertEquals(1, response.getHeaders().get("Access-Control-Expose-Headers").size());
+// assertEquals("X-Count", response.getHeaders().get("Access-Control-Expose-Headers").get(0));
+// assertNull(response.getBody());
+// }
+//
+// @Test
+// @WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
+// public void getData_unavailable_fails() throws RemoteUnavailableException, ViewNotFoundException, SQLException,
+// ViewMalformedException, NotAllowedException, MetadataServiceException {
+//
+// /* mock */
+// when(metadataServiceGateway.getViewById(DATABASE_1_ID, VIEW_1_ID))
+// .thenReturn(VIEW_1_PRIVILEGED_DTO);
+// when(metadataServiceGateway.getAccess(DATABASE_1_ID, USER_1_ID))
+// .thenReturn(DATABASE_1_USER_1_READ_ACCESS_DTO);
+// when(httpServletRequest.getMethod())
+// .thenReturn("GET");
+// doThrow(SQLException.class)
+// .when(viewService)
+// .data(eq(VIEW_1_PRIVILEGED_DTO), any(Instant.class), eq(0L), eq(10L));
+//
+// /* test */
+// assertThrows(DatabaseUnavailableException.class, () -> {
+// viewEndpoint.getData(DATABASE_1_ID, VIEW_1_ID, null, null, null, httpServletRequest, USER_1_PRINCIPAL);
+// });
+// }
@Test
@WithMockUser(username = USER_1_USERNAME, authorities = {"view-database-view-data"})
@@ -396,7 +395,7 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
/* test */
assertThrows(NotAllowedException.class, () -> {
- viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_3_ID, USER_3_PRINCIPAL);
+ viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_3_ID, null, USER_3_PRINCIPAL);
});
}
@@ -412,7 +411,7 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
/* test */
assertThrows(ViewNotFoundException.class, () -> {
- viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_1_ID, USER_4_PRINCIPAL);
+ viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_1_ID, null, USER_4_PRINCIPAL);
});
}
@@ -430,7 +429,7 @@ public class ViewEndpointUnitTest extends AbstractUnitTest {
/* test */
assertThrows(NotAllowedException.class, () -> {
- viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_3_ID, USER_1_PRINCIPAL);
+ viewEndpoint.exportDataset(DATABASE_1_ID, VIEW_3_ID, null, USER_1_PRINCIPAL);
});
}
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/gateway/MetadataServiceGatewayUnitTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/gateway/MetadataServiceGatewayUnitTest.java
index 2730e94d9cb433b198681720a2d54d1de7fdef7a..939d8b5eac46d1d90e7a683b75693558070ef1d9 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/gateway/MetadataServiceGatewayUnitTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/gateway/MetadataServiceGatewayUnitTest.java
@@ -31,7 +31,8 @@ import java.util.List;
import static org.junit.jupiter.api.Assertions.assertEquals;
import static org.junit.jupiter.api.Assertions.assertThrows;
-import static org.mockito.ArgumentMatchers.*;
+import static org.mockito.ArgumentMatchers.anyString;
+import static org.mockito.ArgumentMatchers.eq;
import static org.mockito.Mockito.doThrow;
import static org.mockito.Mockito.when;
@@ -62,7 +63,7 @@ public class MetadataServiceGatewayUnitTest extends AbstractUnitTest {
headers.set("X-Username", CONTAINER_1_PRIVILEGED_USERNAME);
headers.set("X-Password", CONTAINER_1_PRIVILEGED_PASSWORD);
headers.set("X-Database", DATABASE_1_INTERNALNAME);
- headers.set("X-Table", TABLE_1_INTERNALNAME);
+ headers.set("X-Table", TABLE_1_INTERNAL_NAME);
/* mock */
when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(TableDto.class)))
@@ -78,7 +79,7 @@ public class MetadataServiceGatewayUnitTest extends AbstractUnitTest {
assertEquals(CONTAINER_1_PRIVILEGED_USERNAME, response.getDatabase().getContainer().getUsername());
assertEquals(CONTAINER_1_PRIVILEGED_PASSWORD, response.getDatabase().getContainer().getPassword());
assertEquals(DATABASE_1_INTERNALNAME, response.getDatabase().getInternalName());
- assertEquals(TABLE_1_INTERNALNAME, response.getInternalName());
+ assertEquals(TABLE_1_INTERNAL_NAME, response.getInternalName());
}
@Test
@@ -153,7 +154,7 @@ public class MetadataServiceGatewayUnitTest extends AbstractUnitTest {
headers.set("X-Username", CONTAINER_1_PRIVILEGED_USERNAME);
headers.set("X-Password", CONTAINER_1_PRIVILEGED_PASSWORD);
headers.set("X-Database", DATABASE_1_INTERNALNAME);
- headers.set("X-Table", TABLE_1_INTERNALNAME);
+ headers.set("X-Table", TABLE_1_INTERNAL_NAME);
/* mock */
when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(TableDto.class)))
@@ -167,80 +168,6 @@ public class MetadataServiceGatewayUnitTest extends AbstractUnitTest {
});
}
- @Test
- public void getDatabaseByInternalName_succeeds() throws DatabaseNotFoundException, RemoteUnavailableException,
- MetadataServiceException {
-
- /* mock */
- final HttpHeaders headers = new HttpHeaders();
- headers.set("X-Username", CONTAINER_1_PRIVILEGED_USERNAME);
- headers.set("X-Password", CONTAINER_1_PRIVILEGED_PASSWORD);
- when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(PrivilegedDatabaseDto[].class)))
- .thenReturn(ResponseEntity.status(HttpStatus.OK)
- .headers(headers)
- .body(new PrivilegedDatabaseDto[]{DATABASE_1_PRIVILEGED_DTO}));
-
- /* test */
- final PrivilegedDatabaseDto response = metadataServiceGateway.getDatabaseByInternalName(DATABASE_1_INTERNALNAME);
- assertEquals(response.getId(), response.getId());
- }
-
- @Test
- public void getDatabaseByInternalName_unavailable_fails() {
-
- /* mock */
- doThrow(HttpServerErrorException.ServiceUnavailable.class)
- .when(restTemplate)
- .exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(PrivilegedDatabaseDto[].class));
-
- /* test */
- assertThrows(RemoteUnavailableException.class, () -> {
- metadataServiceGateway.getDatabaseByInternalName(DATABASE_1_INTERNALNAME);
- });
- }
-
- @Test
- public void getDatabaseByInternalName_statusCode_fails() {
-
- /* mock */
- when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(PrivilegedDatabaseDto[].class)))
- .thenReturn(ResponseEntity.status(HttpStatus.NO_CONTENT)
- .body(new PrivilegedDatabaseDto[]{DATABASE_1_PRIVILEGED_DTO}));
-
- /* test */
- assertThrows(MetadataServiceException.class, () -> {
- metadataServiceGateway.getDatabaseByInternalName(DATABASE_1_INTERNALNAME);
- });
- }
-
- @Test
- public void getDatabaseByInternalName_emptyBody_fails() {
-
- /* mock */
- when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(PrivilegedDatabaseDto[].class)))
- .thenReturn(ResponseEntity.ok()
- .build());
-
- /* test */
- assertThrows(DatabaseNotFoundException.class, () -> {
- metadataServiceGateway.getDatabaseByInternalName(DATABASE_1_INTERNALNAME);
- });
- }
-
- @Test
- public void getDatabaseByInternalName_notFound_fails() {
-
- /* mock */
- when(restTemplate.exchange(anyString(), eq(HttpMethod.GET), eq(HttpEntity.EMPTY), eq(PrivilegedDatabaseDto[].class)))
- .thenReturn(ResponseEntity.ok()
- .body(new PrivilegedDatabaseDto[]{}));
-
- /* test */
- assertThrows(DatabaseNotFoundException.class, () -> {
- metadataServiceGateway.getDatabaseByInternalName(DATABASE_1_INTERNALNAME);
- });
- }
-
@Test
public void getDatabaseById_succeeds() throws RemoteUnavailableException, MetadataServiceException,
DatabaseNotFoundException {
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/ActuatorEndpointMvcTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/ActuatorEndpointMvcTest.java
index f074abcc875b1f5389aa0c371f05247fac305cc9..a7a83a6184cab52aa4739df2005680a60eb7f81b 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/ActuatorEndpointMvcTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/ActuatorEndpointMvcTest.java
@@ -1,6 +1,5 @@
package at.tuwien.mvc;
-import at.tuwien.annotations.MockAmqp;
import at.tuwien.test.AbstractUnitTest;
import lombok.extern.log4j.Log4j2;
import org.junit.jupiter.api.Test;
@@ -21,7 +20,6 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.
@AutoConfigureMockMvc
@SpringBootTest
@AutoConfigureObservability
-@MockAmqp
public class ActuatorEndpointMvcTest extends AbstractUnitTest {
@Autowired
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/OpenApiEndpointMvcTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/OpenApiEndpointMvcTest.java
index d1426cdf69db414892baed59cd121087cea8cc1b..b5ed475ea83a42db6f458d95254a081c5de5ae95 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/OpenApiEndpointMvcTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/OpenApiEndpointMvcTest.java
@@ -12,7 +12,6 @@ import org.junit.jupiter.api.extension.ExtendWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.autoconfigure.web.servlet.AutoConfigureMockMvc;
import org.springframework.boot.test.context.SpringBootTest;
-import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import org.springframework.test.web.servlet.MockMvc;
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/PrometheusEndpointMvcTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/PrometheusEndpointMvcTest.java
index f4bd429a9039ab2f2fb36c4fc2fce653ceda8054..01bce16b08f84e7ad3901beb143ef0737d9ad571 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/PrometheusEndpointMvcTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/PrometheusEndpointMvcTest.java
@@ -136,7 +136,7 @@ public class PrometheusEndpointMvcTest extends AbstractUnitTest {
/* ignore */
}
try {
- subsetEndpoint.create(DATABASE_1_ID, ExecuteStatementDto.builder().statement(QUERY_5_STATEMENT).build(), USER_1_PRINCIPAL, 0L, 10L, null);
+ subsetEndpoint.create(DATABASE_1_ID, ExecuteStatementDto.builder().statement(QUERY_5_STATEMENT).build(), USER_1_PRINCIPAL, httpServletRequest, null, 0L, 10L);
} catch (Exception e) {
/* ignore */
}
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/SubsetEndpointMvcTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/SubsetEndpointMvcTest.java
index 94341550a389505f07301bb34c105547aaaec9b8..6a3851b445cf83b74eaccf1b6a3b86bf61ec03d8 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/SubsetEndpointMvcTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/mvc/SubsetEndpointMvcTest.java
@@ -1,6 +1,5 @@
package at.tuwien.mvc;
-import at.tuwien.annotations.MockAmqp;
import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.service.SubsetService;
import at.tuwien.test.AbstractUnitTest;
@@ -26,7 +25,6 @@ import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.
@AutoConfigureMockMvc
@SpringBootTest
@AutoConfigureObservability
-@MockAmqp
public class SubsetEndpointMvcTest extends AbstractUnitTest {
@MockBean
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
index 23503384b617ec7e066d9a0aeebe6c04c5f22a13..96d78da001a67a8e4e774b54b0c98e70234218b4 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SchemaServiceIntegrationTest.java
@@ -196,8 +196,8 @@ public class SchemaServiceIntegrationTest extends AbstractUnitTest {
assertNotNull(unique0.getTable());
assertEquals("some_constraint", unique0.getName());
assertNull(unique0.getTable().getId());
- assertEquals(TABLE_1_INTERNALNAME, unique0.getTable().getName());
- assertEquals(TABLE_1_INTERNALNAME, unique0.getTable().getInternalName());
+ assertEquals(TABLE_1_INTERNAL_NAME, unique0.getTable().getName());
+ assertEquals(TABLE_1_INTERNAL_NAME, unique0.getTable().getInternalName());
assertEquals(TABLE_1_DESCRIPTION, unique0.getTable().getDescription());
assertTrue(unique0.getTable().getIsVersioned());
assertNotNull(unique0.getColumns());
@@ -235,8 +235,8 @@ public class SchemaServiceIntegrationTest extends AbstractUnitTest {
final TableBriefDto fk0table = fk0.getTable();
assertNull(fk0table.getId());
assertEquals(DATABASE_1_ID, fk0table.getDatabaseId());
- assertEquals(TABLE_1_INTERNALNAME, fk0table.getName());
- assertEquals(TABLE_1_INTERNALNAME, fk0table.getInternalName());
+ assertEquals(TABLE_1_INTERNAL_NAME, fk0table.getName());
+ assertEquals(TABLE_1_INTERNAL_NAME, fk0table.getInternalName());
assertNotNull(fk0.getOnDelete());
assertNotNull(fk0.getOnUpdate());
assertNotNull(fk0.getReferencedTable());
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SubsetServiceIntegrationTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SubsetServiceIntegrationTest.java
index 0f0820926f71b5a78bebd0b6b97f763e99145abe..215e919844cab0f595b040eeb340e9f51cec2bde 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SubsetServiceIntegrationTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/SubsetServiceIntegrationTest.java
@@ -1,19 +1,13 @@
package at.tuwien.service;
-import at.tuwien.ExportResourceDto;
import at.tuwien.api.database.query.QueryDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.identifier.IdentifierDto;
import at.tuwien.config.MariaDbConfig;
import at.tuwien.config.MariaDbContainerConfig;
-import at.tuwien.config.S3Config;
import at.tuwien.exception.*;
-import at.tuwien.gateway.AnalyseServiceGateway;
import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.test.AbstractUnitTest;
import lombok.extern.log4j.Log4j2;
-import org.apache.commons.lang3.RandomStringUtils;
-import org.apache.spark.sql.Dataset;
import org.junit.jupiter.api.BeforeEach;
import org.junit.jupiter.api.Test;
import org.junit.jupiter.api.extension.ExtendWith;
@@ -25,16 +19,11 @@ import org.testcontainers.containers.MariaDBContainer;
import org.testcontainers.junit.jupiter.Container;
import org.testcontainers.junit.jupiter.Testcontainers;
-import java.io.IOException;
-import java.math.BigInteger;
import java.sql.SQLException;
-import java.time.Instant;
import java.util.List;
import java.util.Map;
import static org.junit.jupiter.api.Assertions.*;
-import static org.mockito.ArgumentMatchers.*;
-import static org.mockito.Mockito.doNothing;
import static org.mockito.Mockito.when;
@Log4j2
@@ -49,18 +38,9 @@ public class SubsetServiceIntegrationTest extends AbstractUnitTest {
@MockBean
private MetadataServiceGateway metadataServiceGateway;
- @MockBean
- private AnalyseServiceGateway dataDatabaseSidecarGateway;
-
- @MockBean
- private StorageService storageService;
-
@Container
private static MariaDBContainer<?> mariaDBContainer = MariaDbContainerConfig.getContainer();
- @Autowired
- private S3Config s3Config;
-
@BeforeEach
public void beforeEach() throws SQLException {
genesis();
@@ -69,138 +49,6 @@ public class SubsetServiceIntegrationTest extends AbstractUnitTest {
MariaDbConfig.createInitDatabase(CONTAINER_1_PRIVILEGED_DTO, DATABASE_1_DTO);
}
- @Test
- public void execute_succeeds() throws QueryStoreInsertException, TableMalformedException, SQLException,
- QueryNotFoundException, UserNotFoundException, NotAllowedException, RemoteUnavailableException,
- MetadataServiceException, DatabaseNotFoundException, InterruptedException {
-
- /* pre-condition */
- Thread.sleep(1000) /* wait for test container some more */;
-
- /* mock */
- when(metadataServiceGateway.getUserById(QUERY_1_CREATED_BY))
- .thenReturn(QUERY_1_CREATOR);
-
- /* test */
- final QueryResultDto response = queryService.execute(DATABASE_1_PRIVILEGED_DTO, QUERY_1_STATEMENT, Instant.now(), USER_1_ID, 0L, 10L, null, null);
- assertNotNull(response);
- assertNotNull(response.getId());
- assertNotNull(response.getHeaders());
- assertEquals(5, response.getHeaders().size());
- assertEquals(List.of(Map.of("id", 0), Map.of("date", 1), Map.of("location", 2), Map.of("mintemp", 3), Map.of("rainfall", 4)), response.getHeaders());
- assertNotNull(response.getResult());
- assertEquals(3, response.getResult().size());
- /* row 0 */
- assertEquals(BigInteger.valueOf(1L), response.getResult().get(0).get("id"));
- assertEquals(Instant.ofEpochSecond(1228089600), response.getResult().get(0).get("date"));
- assertEquals("Albury", response.getResult().get(0).get("location"));
- assertEquals(13.4, response.getResult().get(0).get("mintemp"));
- assertEquals(0.6, response.getResult().get(0).get("rainfall"));
- /* row 1 */
- assertEquals(BigInteger.valueOf(2L), response.getResult().get(1).get("id"));
- assertEquals(Instant.ofEpochSecond(1228176000), response.getResult().get(1).get("date"));
- assertEquals("Albury", response.getResult().get(1).get("location"));
- assertEquals(7.4, response.getResult().get(1).get("mintemp"));
- assertEquals(0.0, response.getResult().get(1).get("rainfall"));
- /* row 2 */
- assertEquals(BigInteger.valueOf(3L), response.getResult().get(2).get("id"));
- assertEquals(Instant.ofEpochSecond(1228262400), response.getResult().get(2).get("date"));
- assertEquals("Albury", response.getResult().get(2).get("location"));
- assertEquals(12.9, response.getResult().get(2).get("mintemp"));
- assertEquals(0.0, response.getResult().get(2).get("rainfall"));
- }
-
- @Test
- public void execute_joinWithAlias_succeeds() throws QueryStoreInsertException, TableMalformedException,
- SQLException, QueryNotFoundException, UserNotFoundException, NotAllowedException,
- RemoteUnavailableException, MetadataServiceException, DatabaseNotFoundException, InterruptedException {
-
- /* pre-condition */
- Thread.sleep(1000) /* wait for test container some more */;
-
- /* mock */
- when(metadataServiceGateway.getUserById(QUERY_1_CREATED_BY))
- .thenReturn(QUERY_1_CREATOR);
-
- /* test */
- final QueryResultDto response = queryService.execute(DATABASE_1_PRIVILEGED_DTO, QUERY_7_STATEMENT, Instant.now(), USER_1_ID, 0L, 10L, null, null);
- assertNotNull(response);
- assertNotNull(response.getId());
- assertNotNull(response.getHeaders());
- assertEquals(5, response.getHeaders().size());
- assertEquals(List.of(Map.of("id", 0), Map.of("date", 1), Map.of("location", 2), Map.of("lat", 3), Map.of("lng", 4)), response.getHeaders());
- assertNotNull(response.getResult());
- assertEquals(1, response.getResult().size());
- /* row 0 */
- assertEquals(BigInteger.valueOf(1L), response.getResult().get(0).get("id"));
- assertEquals(Instant.ofEpochSecond(1228089600), response.getResult().get(0).get("date"));
- assertEquals("Albury", response.getResult().get(0).get("location"));
- assertEquals(-36.0653583, response.getResult().get(0).get("lat"));
- assertEquals(146.9112214, response.getResult().get(0).get("lng"));
- }
-
- @Test
- public void execute_oneResult_succeeds() throws QueryStoreInsertException, TableMalformedException, SQLException,
- QueryNotFoundException, UserNotFoundException, NotAllowedException, RemoteUnavailableException,
- MetadataServiceException, DatabaseNotFoundException, InterruptedException {
-
- /* pre-condition */
- Thread.sleep(1000) /* wait for test container some more */;
-
- /* mock */
- when(metadataServiceGateway.getIdentifiers(DATABASE_1_ID, QUERY_1_ID))
- .thenReturn(List.of(IDENTIFIER_2_DTO));
- when(metadataServiceGateway.getUserById(QUERY_1_CREATED_BY))
- .thenReturn(QUERY_1_CREATOR);
-
- /* test */
- final QueryResultDto response = queryService.execute(DATABASE_1_PRIVILEGED_DTO, QUERY_1_STATEMENT, Instant.now(), USER_1_ID, 0L, 1L, null, null);
- assertNotNull(response);
- assertNotNull(response.getId());
- assertNotNull(response.getHeaders());
- assertEquals(5, response.getHeaders().size());
- assertEquals(List.of(Map.of("id", 0), Map.of("date", 1), Map.of("location", 2), Map.of("mintemp", 3), Map.of("rainfall", 4)), response.getHeaders());
- assertNotNull(response.getResult());
- assertEquals(1, response.getResult().size());
- /* row 0 */
- assertEquals(BigInteger.valueOf(1L), response.getResult().get(0).get("id"));
- assertEquals(Instant.ofEpochSecond(1228089600), response.getResult().get(0).get("date"));
- assertEquals("Albury", response.getResult().get(0).get("location"));
- assertEquals(13.4, response.getResult().get(0).get("mintemp"));
- assertEquals(0.6, response.getResult().get(0).get("rainfall"));
- }
-
- @Test
- public void execute_oneResultPagination_succeeds() throws QueryStoreInsertException, TableMalformedException,
- SQLException, QueryNotFoundException, UserNotFoundException, NotAllowedException,
- RemoteUnavailableException, MetadataServiceException, DatabaseNotFoundException, InterruptedException {
-
- /* pre-condition */
- Thread.sleep(1000) /* wait for test container some more */;
-
- /* mock */
- when(metadataServiceGateway.getUserById(USER_1_ID))
- .thenReturn(USER_1_DTO);
- when(metadataServiceGateway.getIdentifiers(eq(DATABASE_1_ID), anyLong()))
- .thenReturn(List.of());
-
- /* test */
- final QueryResultDto response = queryService.execute(DATABASE_1_PRIVILEGED_DTO, QUERY_1_STATEMENT, Instant.now(), USER_1_ID, 1L, 1L, null, null);
- assertNotNull(response);
- assertNotNull(response.getId());
- assertNotNull(response.getHeaders());
- assertEquals(5, response.getHeaders().size());
- assertEquals(List.of(Map.of("id", 0), Map.of("date", 1), Map.of("location", 2), Map.of("mintemp", 3), Map.of("rainfall", 4)), response.getHeaders());
- assertNotNull(response.getResult());
- assertEquals(1, response.getResult().size());
- /* row 1 */
- assertEquals(BigInteger.valueOf(2L), response.getResult().get(0).get("id"));
- assertEquals(Instant.ofEpochSecond(1228176000), response.getResult().get(0).get("date"));
- assertEquals("Albury", response.getResult().get(0).get("location"));
- assertEquals(7.4, response.getResult().get(0).get("mintemp"));
- assertEquals(0.0, response.getResult().get(0).get("rainfall"));
- }
-
@Test
public void findAll_succeeds() throws SQLException, QueryNotFoundException, RemoteUnavailableException,
MetadataServiceException, DatabaseNotFoundException, InterruptedException {
@@ -300,18 +148,6 @@ public class SubsetServiceIntegrationTest extends AbstractUnitTest {
});
}
- @Test
- public void export_succeeds() throws SQLException, StorageUnavailableException, QueryMalformedException,
- RemoteUnavailableException, IOException, StorageNotFoundException, InterruptedException,
- AnalyseServiceException, ViewNotFoundException, MalformedException {
-
- /* mock */
- MariaDbConfig.dropQueryStore(DATABASE_1_PRIVILEGED_DTO);
-
- /* test */
- export_generic();
- }
-
protected void findById_generic(Long queryId) throws RemoteUnavailableException, SQLException,
UserNotFoundException, QueryNotFoundException, MetadataServiceException, DatabaseNotFoundException,
InterruptedException {
@@ -378,26 +214,4 @@ public class SubsetServiceIntegrationTest extends AbstractUnitTest {
assertEquals(0, response.size());
}
- protected void export_generic() throws StorageUnavailableException, SQLException, RemoteUnavailableException,
- QueryMalformedException, StorageNotFoundException, IOException, InterruptedException,
- AnalyseServiceException, ViewNotFoundException, MalformedException {
- final String filename = RandomStringUtils.randomAlphanumeric(40).toLowerCase() + ".tmp";
- EXPORT_RESOURCE_DTO.setFilename(filename);
-
- /* pre-condition */
- Thread.sleep(1000) /* wait for test container some more */;
-
- /* mock */
- doNothing()
- .when(dataDatabaseSidecarGateway)
- .exportTable(anyLong(), anyLong());
- when(storageService.transformDataset(any(Dataset.class)))
- .thenReturn(EXPORT_RESOURCE_DTO);
-
- /* test */
- final ExportResourceDto response = queryService.export(DATABASE_1_PRIVILEGED_DTO, QUERY_1_DTO, Instant.now());
- assertEquals(filename, response.getFilename());
- assertNotNull(response.getResource().getInputStream());
- }
-
}
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/TableServiceIntegrationTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/TableServiceIntegrationTest.java
index 3b59dac2c14c6e1194af7b135869273719244d1f..1236c549d77c79271576738c6f6a226aea314b5a 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/TableServiceIntegrationTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/TableServiceIntegrationTest.java
@@ -1,7 +1,5 @@
package at.tuwien.service;
-import at.tuwien.ExportResourceDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.*;
import at.tuwien.api.database.table.columns.ColumnCreateDto;
import at.tuwien.api.database.table.columns.ColumnDto;
@@ -18,7 +16,6 @@ import at.tuwien.api.database.table.internal.TableCreateDto;
import at.tuwien.config.MariaDbConfig;
import at.tuwien.config.MariaDbContainerConfig;
import at.tuwien.exception.*;
-import at.tuwien.gateway.AnalyseServiceGateway;
import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.test.AbstractUnitTest;
import lombok.extern.log4j.Log4j2;
@@ -27,23 +24,18 @@ import org.junit.jupiter.api.extension.ExtendWith;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.boot.test.mock.mockito.MockBean;
-import org.springframework.core.io.InputStreamResource;
import org.springframework.test.context.junit.jupiter.SpringExtension;
import org.testcontainers.containers.MariaDBContainer;
import org.testcontainers.junit.jupiter.Container;
import org.testcontainers.junit.jupiter.Testcontainers;
-import java.io.InputStream;
import java.math.BigDecimal;
-import java.math.BigInteger;
import java.sql.SQLException;
import java.time.Instant;
import java.util.*;
import static at.tuwien.service.SchemaServiceIntegrationTest.assertColumn;
import static org.junit.jupiter.api.Assertions.*;
-import static org.mockito.ArgumentMatchers.anyLong;
-import static org.mockito.Mockito.doNothing;
import static org.mockito.Mockito.when;
@Log4j2
@@ -58,9 +50,6 @@ public class TableServiceIntegrationTest extends AbstractUnitTest {
@MockBean
private MetadataServiceGateway metadataServiceGateway;
- @MockBean
- private AnalyseServiceGateway dataDatabaseSidecarGateway;
-
@MockBean
private StorageService storageService;
@@ -618,12 +607,12 @@ public class TableServiceIntegrationTest extends AbstractUnitTest {
TableExistsException {
/* mock */
- MariaDbConfig.dropTable(DATABASE_1_PRIVILEGED_DTO, TABLE_1_INTERNALNAME);
+ MariaDbConfig.dropTable(DATABASE_1_PRIVILEGED_DTO, TABLE_1_INTERNAL_NAME);
/* test */
final TableDto response = tableService.createTable(DATABASE_1_PRIVILEGED_DTO, TABLE_1_CREATE_INTERNAL_DTO);
assertEquals(TABLE_1_NAME, response.getName());
- assertEquals(TABLE_1_INTERNALNAME, response.getInternalName());
+ assertEquals(TABLE_1_INTERNAL_NAME, response.getInternalName());
assertEquals(TABLE_1_COLUMNS.size(), response.getColumns().size());
}
@@ -674,49 +663,6 @@ public class TableServiceIntegrationTest extends AbstractUnitTest {
});
}
- @Test
- public void getPaginatedData_succeeds() throws SQLException, TableMalformedException {
-
- /* test */
- final QueryResultDto response = tableService.getPaginatedData(TABLE_1_PRIVILEGED_DTO, null, 0L, 10L);
- assertEquals(TABLE_1_ID, response.getId());
- final List<Map<String, Integer>> headers = response.getHeaders();
- assertEquals(5, headers.size());
- assertEquals(0, headers.get(0).get("id"));
- assertEquals(1, headers.get(1).get("date"));
- assertEquals(2, headers.get(2).get("location"));
- assertEquals(3, headers.get(3).get("mintemp"));
- assertEquals(4, headers.get(4).get("rainfall"));
- final List<Map<String, Object>> result = response.getResult();
- assertEquals(Instant.ofEpochSecond(1228089600), result.get(0).get("date"));
- assertEquals(0.6, result.get(0).get("rainfall"));
- assertEquals("Albury", result.get(0).get("location"));
- assertEquals(BigInteger.valueOf(1L), result.get(0).get("id"));
- assertEquals(13.4, result.get(0).get("mintemp"));
- assertEquals(Instant.ofEpochSecond(1228176000), result.get(1).get("date"));
- assertEquals(0.0, result.get(1).get("rainfall"));
- assertEquals("Albury", result.get(1).get("location"));
- assertEquals(BigInteger.valueOf(2L), result.get(1).get("id"));
- assertEquals(7.4, result.get(1).get("mintemp"));
- assertEquals(Instant.ofEpochSecond(1228262400), result.get(2).get("date"));
- assertEquals(0.0, result.get(2).get("rainfall"));
- assertEquals("Albury", result.get(2).get("location"));
- assertEquals(BigInteger.valueOf(3L), result.get(2).get("id"));
- assertEquals(12.9, result.get(2).get("mintemp"));
- }
-
- @Test
- public void getPaginatedData_notFound_fails() throws SQLException {
-
- /* mock */
- MariaDbConfig.createDatabase(CONTAINER_1_PRIVILEGED_DTO, DATABASE_2_INTERNALNAME);
-
- /* test */
- assertThrows(TableMalformedException.class, () -> {
- tableService.getPaginatedData(TABLE_5_PRIVILEGED_DTO, null, 0L, 10L);
- });
- }
-
@Test
public void history_succeeds() throws SQLException, TableNotFoundException {
@@ -741,36 +687,4 @@ public class TableServiceIntegrationTest extends AbstractUnitTest {
});
}
- @Test
- public void exportTable_succeeds() throws QueryMalformedException, RemoteUnavailableException,
- StorageNotFoundException, StorageUnavailableException, AnalyseServiceException, TableNotFoundException,
- MalformedException {
- final ExportResourceDto mock = ExportResourceDto.builder()
- .filename("weather_aus.csv")
- .resource(new InputStreamResource(InputStream.nullInputStream()))
- .build();
-
- /* mock */
- doNothing()
- .when(dataDatabaseSidecarGateway)
- .exportTable(anyLong(), anyLong());
- when(storageService.getResource("weather_aus.csv"))
- .thenReturn(mock);
-
- /* test */
- final ExportResourceDto response = tableService.exportDataset(TABLE_1_PRIVILEGED_DTO, null);
- }
-
- @Test
- public void exportDataset_malformedData_fails() throws SQLException {
-
- /* mock */
- MariaDbConfig.createDatabase(CONTAINER_1_PRIVILEGED_DTO, DATABASE_2_INTERNALNAME);
-
- /* test */
- assertThrows(QueryMalformedException.class, () -> {
- tableService.exportDataset(TABLE_5_PRIVILEGED_DTO, null);
- });
- }
-
}
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/ViewServiceIntegrationTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/ViewServiceIntegrationTest.java
index 4018c95334ffff498ac0f72aa28528e719d266f0..f3b309cba43d28545b4d7bcac45bdfef42c5b089 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/ViewServiceIntegrationTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/service/ViewServiceIntegrationTest.java
@@ -2,7 +2,6 @@ package at.tuwien.service;
import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.ViewDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.config.MariaDbConfig;
import at.tuwien.config.MariaDbContainerConfig;
import at.tuwien.exception.DatabaseMalformedException;
@@ -21,9 +20,7 @@ import org.testcontainers.junit.jupiter.Container;
import org.testcontainers.junit.jupiter.Testcontainers;
import java.sql.SQLException;
-import java.time.Instant;
import java.util.List;
-import java.util.Map;
import static org.junit.jupiter.api.Assertions.*;
@@ -51,7 +48,7 @@ public class ViewServiceIntegrationTest extends AbstractUnitTest {
public void delete_succeeds() throws SQLException, ViewMalformedException {
/* test */
- viewService.delete(VIEW_1_PRIVILEGED_DTO);
+ viewService.delete(DATABASE_1_PRIVILEGED_DTO, VIEW_1_INTERNAL_NAME);
}
@Test
@@ -75,36 +72,6 @@ public class ViewServiceIntegrationTest extends AbstractUnitTest {
}
- @Test
- public void data_succeeds() throws SQLException, ViewMalformedException {
-
- /* test */
- final QueryResultDto response = viewService.data(VIEW_2_PRIVILEGED_DTO, Instant.now(), 0L, 10L);
- assertNotNull(response);
- assertNotNull(response.getId());
- assertEquals(VIEW_2_ID, response.getId());
- assertNotNull(response.getHeaders());
- assertEquals(4, response.getHeaders().size());
- assertEquals(List.of(Map.of("date", 0), Map.of("loc", 1), Map.of("mintemp", 2), Map.of("rainfall", 3)), response.getHeaders());
- assertNotNull(response.getResult());
- assertEquals(3, response.getResult().size());
- /* row 0 */
- assertEquals(Instant.ofEpochSecond(1228089600), response.getResult().get(0).get("date"));
- assertEquals("Albury", response.getResult().get(0).get("loc"));
- assertEquals(13.4, response.getResult().get(0).get("mintemp"));
- assertEquals(0.6, response.getResult().get(0).get("rainfall"));
- /* row 1 */
- assertEquals(Instant.ofEpochSecond(1228176000), response.getResult().get(1).get("date"));
- assertEquals("Albury", response.getResult().get(1).get("loc"));
- assertEquals(7.4, response.getResult().get(1).get("mintemp"));
- assertEquals(0.0, response.getResult().get(1).get("rainfall"));
- /* row 2 */
- assertEquals(Instant.ofEpochSecond(1228262400), response.getResult().get(2).get("date"));
- assertEquals("Albury", response.getResult().get(2).get("loc"));
- assertEquals(12.9, response.getResult().get(2).get("mintemp"));
- assertEquals(0.0, response.getResult().get(2).get("rainfall"));
- }
-
@Test
public void getSchemas_succeeds() throws SQLException, ViewNotFoundException, DatabaseMalformedException {
diff --git a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/validation/EndpointValidatorUnitTest.java b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/validation/EndpointValidatorUnitTest.java
index b12313dfe957d0f02f05c58bfce1066979973d07..e237c32d2862c70e4f0f1ea4ccfae8f44e468ffb 100644
--- a/dbrepo-data-service/rest-service/src/test/java/at/tuwien/validation/EndpointValidatorUnitTest.java
+++ b/dbrepo-data-service/rest-service/src/test/java/at/tuwien/validation/EndpointValidatorUnitTest.java
@@ -1,6 +1,5 @@
package at.tuwien.validation;
-import at.tuwien.annotations.MockAmqp;
import at.tuwien.exception.PaginationException;
import at.tuwien.exception.QueryNotSupportedException;
import at.tuwien.test.AbstractUnitTest;
@@ -12,19 +11,14 @@ import org.springframework.boot.test.autoconfigure.actuate.observability.AutoCon
import org.springframework.boot.test.autoconfigure.web.servlet.AutoConfigureMockMvc;
import org.springframework.boot.test.context.SpringBootTest;
import org.springframework.test.context.junit.jupiter.SpringExtension;
-import org.springframework.test.web.servlet.MockMvc;
import static org.junit.jupiter.api.Assertions.assertThrows;
-import static org.springframework.test.web.servlet.request.MockMvcRequestBuilders.get;
-import static org.springframework.test.web.servlet.result.MockMvcResultHandlers.print;
-import static org.springframework.test.web.servlet.result.MockMvcResultMatchers.status;
@Log4j2
@ExtendWith(SpringExtension.class)
@AutoConfigureMockMvc
@SpringBootTest
@AutoConfigureObservability
-@MockAmqp
public class EndpointValidatorUnitTest extends AbstractUnitTest {
@Autowired
diff --git a/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql b/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
index 322e67cc07397105bb7c763efe4d37c905cc1b18..7b8dd082b5bce7ba87db7188c8d4814afb20f940 100644
--- a/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
+++ b/dbrepo-data-service/rest-service/src/test/resources/init/weather.sql
@@ -1,6 +1,8 @@
/* https://www.kaggle.com/jsphyg/weather-dataset-rattle-package */
-CREATE DATABASE weather;
-USE weather;
+CREATE
+DATABASE weather;
+USE
+weather;
CREATE TABLE weather_location
(
@@ -12,8 +14,8 @@ CREATE TABLE weather_location
CREATE TABLE weather_aus
(
id SERIAL PRIMARY KEY,
- `date` DATE NOT NULL,
- location VARCHAR(255) NULL COMMENT 'Closest city',
+ `date` DATE NOT NULL,
+ location VARCHAR(255) NULL COMMENT 'Closest city',
mintemp DOUBLE PRECISION NULL,
rainfall DOUBLE PRECISION NULL,
FOREIGN KEY (location) REFERENCES weather_location (location) ON DELETE SET NULL,
@@ -44,7 +46,7 @@ CREATE TABLE sensor
CREATE TABLE exotic_boolean
(
- `bool_default` BOOLEAN NOT NULL PRIMARY KEY,
+ `bool_default` BOOLEAN NOT NULL PRIMARY KEY,
`bool_tinyint` TINYINT(1) NOT NULL,
`bool_tinyint_unsigned` TINYINT(1) UNSIGNED NOT NULL
) WITH SYSTEM VERSIONING;
@@ -91,4 +93,11 @@ CREATE VIEW not_in_metadata_db2 AS
(
select `date`, `location`, `mintemp` as `MinTemp`, `rainfall` as `Rainfall`
from `weather_aus`
+where `location` = 'Vienna');
+
+-- internal view who should not be indexed into schema
+CREATE VIEW 5c7ba02f681b889892ee82987aa6c74ce45a30973cfef06b78ce797f25189b9a AS
+(
+select `date`, `location`, `mintemp` as `MinTemp`, `rainfall` as `Rainfall`
+from `weather_aus`
where `location` = 'Vienna');
\ No newline at end of file
diff --git a/dbrepo-data-service/services/pom.xml b/dbrepo-data-service/services/pom.xml
index ee3c9b2b6cb322239efcc4eb8c828a5c6c6e88dc..66f014ef7c14c1e2ced090684a20a538a1713fcd 100644
--- a/dbrepo-data-service/services/pom.xml
+++ b/dbrepo-data-service/services/pom.xml
@@ -6,18 +6,18 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>services</artifactId>
<name>dbrepo-data-service-services</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-data-service-querystore</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</dependency>
</dependencies>
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/MetadataServiceGateway.java b/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/MetadataServiceGateway.java
index 282e7d593feec58991dc9f4530e3314fa208eb29..6575913040f1c62e242d092d1564bc3dccc87ba0 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/MetadataServiceGateway.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/MetadataServiceGateway.java
@@ -4,11 +4,9 @@ import at.tuwien.api.container.internal.PrivilegedContainerDto;
import at.tuwien.api.database.DatabaseAccessDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
-import at.tuwien.api.database.table.TableStatisticDto;
import at.tuwien.api.database.table.internal.PrivilegedTableDto;
import at.tuwien.api.identifier.IdentifierDto;
import at.tuwien.api.user.PrivilegedUserDto;
-import at.tuwien.api.user.UserBriefDto;
import at.tuwien.api.user.UserDto;
import at.tuwien.exception.*;
import jakarta.validation.constraints.NotNull;
@@ -42,18 +40,6 @@ public interface MetadataServiceGateway {
PrivilegedDatabaseDto getDatabaseById(Long id) throws DatabaseNotFoundException, RemoteUnavailableException,
MetadataServiceException;
- /**
- * Get a database with given internal name from the metadata service.
- *
- * @param internalName The internal name.
- * @return The database, if successful.
- * @throws DatabaseNotFoundException The database was not found in the metadata service.
- * @throws RemoteUnavailableException The remote service is not available.
- * @throws MetadataServiceException The remote service returned invalid data.
- */
- PrivilegedDatabaseDto getDatabaseByInternalName(String internalName) throws DatabaseNotFoundException,
- RemoteUnavailableException, MetadataServiceException;
-
/**
* Get a table with given database id and table id from the metadata service.
*
@@ -91,17 +77,6 @@ public interface MetadataServiceGateway {
*/
UserDto getUserById(UUID userId) throws RemoteUnavailableException, UserNotFoundException, MetadataServiceException;
- /**
- * Get a user with given username from the metadata service.
- *
- * @return The user, if successful. Otherwise empty list.
- * @throws RemoteUnavailableException The remote service is not available and invalid data was returned.
- * @throws UserNotFoundException The user was not found in the metadata service.
- * @throws MetadataServiceException The remote service returned invalid data.
- */
- UUID getSystemUserId() throws RemoteUnavailableException, UserNotFoundException,
- MetadataServiceException;
-
/**
* Get a user with given user id from the metadata service.
*
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/impl/MetadataServiceGatewayImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/impl/MetadataServiceGatewayImpl.java
index 3c03f022b311bbbe1d161888cec1a10d07bae55a..d83a06389d448e335ed0a5b339c28988ec8e0efa 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/impl/MetadataServiceGatewayImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/gateway/impl/MetadataServiceGatewayImpl.java
@@ -10,9 +10,7 @@ import at.tuwien.api.database.table.TableDto;
import at.tuwien.api.database.table.internal.PrivilegedTableDto;
import at.tuwien.api.identifier.IdentifierDto;
import at.tuwien.api.user.PrivilegedUserDto;
-import at.tuwien.api.user.UserBriefDto;
import at.tuwien.api.user.UserDto;
-import at.tuwien.config.GatewayConfig;
import at.tuwien.exception.*;
import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.mapper.MetadataMapper;
@@ -37,14 +35,11 @@ import java.util.UUID;
public class MetadataServiceGatewayImpl implements MetadataServiceGateway {
private final RestTemplate restTemplate;
- private final GatewayConfig gatewayConfig;
private final MetadataMapper metadataMapper;
@Autowired
- public MetadataServiceGatewayImpl(RestTemplate restTemplate, GatewayConfig gatewayConfig,
- MetadataMapper metadataMapper) {
+ public MetadataServiceGatewayImpl(RestTemplate restTemplate, MetadataMapper metadataMapper) {
this.restTemplate = restTemplate;
- this.gatewayConfig = gatewayConfig;
this.metadataMapper = metadataMapper;
}
@@ -121,37 +116,6 @@ public class MetadataServiceGatewayImpl implements MetadataServiceGateway {
return database;
}
- @Override
- public PrivilegedDatabaseDto getDatabaseByInternalName(String internalName) throws DatabaseNotFoundException,
- RemoteUnavailableException, MetadataServiceException {
- final ResponseEntity<PrivilegedDatabaseDto[]> response;
- final String url = "/api/database/";
- log.debug("find privileged database from url: {}", url);
- try {
- response = restTemplate.exchange(url, HttpMethod.GET, HttpEntity.EMPTY, PrivilegedDatabaseDto[].class);
- } catch (ResourceAccessException | HttpServerErrorException e) {
- log.error("Failed to find database with internal name {}: {}", internalName, e.getMessage());
- throw new RemoteUnavailableException("Failed to find database: " + e.getMessage(), e);
- }
- if (!response.getStatusCode().equals(HttpStatus.OK)) {
- log.error("Failed to find database with internal name {}: service responded unsuccessful: {}", internalName, response.getStatusCode());
- throw new MetadataServiceException("Failed to find database: service responded unsuccessful: " + response.getStatusCode());
- }
- /* body first, then headers next */
- if (response.getBody() == null || response.getBody().length != 1) {
- log.error("Failed to find database with internal name {}: body is empty", internalName);
- throw new DatabaseNotFoundException("Failed to find database: body is empty");
- }
- final List<String> expectedHeaders = List.of("X-Username", "X-Password");
- if (!response.getHeaders().keySet().containsAll(expectedHeaders)) {
- log.error("Failed to find all privileged database headers");
- log.debug("expected headers: {}", expectedHeaders);
- log.debug("found headers: {}", response.getHeaders().keySet());
- throw new MetadataServiceException("Failed to find all privileged database headers");
- }
- return response.getBody()[0];
- }
-
@Override
public PrivilegedTableDto getTableById(Long databaseId, Long id) throws TableNotFoundException,
RemoteUnavailableException, MetadataServiceException {
@@ -259,34 +223,6 @@ public class MetadataServiceGatewayImpl implements MetadataServiceGateway {
return response.getBody();
}
- @Override
- public UUID getSystemUserId() throws RemoteUnavailableException, UserNotFoundException,
- MetadataServiceException {
- final ResponseEntity<UserBriefDto[]> response;
- try {
- response = restTemplate.exchange("/api/user?username=" + gatewayConfig.getSystemUsername(), HttpMethod.GET, HttpEntity.EMPTY, UserBriefDto[].class);
- } catch (ResourceAccessException | HttpServerErrorException e) {
- log.error("Failed to find user with username {}: {}", gatewayConfig.getSystemUsername(), e.getMessage());
- throw new RemoteUnavailableException("Failed to find user with username " + gatewayConfig.getSystemUsername() + ": " + e.getMessage(), e);
- } catch (HttpClientErrorException.NotFound e) {
- log.error("Failed to find user with username {}: not found: {}", gatewayConfig.getSystemUsername(), e.getMessage());
- throw new UserNotFoundException("Failed to find user with username " + gatewayConfig.getSystemUsername() + ": " + e.getMessage(), e);
- }
- if (!response.getStatusCode().equals(HttpStatus.OK)) {
- log.error("Failed to find user with username {}: service responded unsuccessful: {}", gatewayConfig.getSystemUsername(), response.getStatusCode());
- throw new MetadataServiceException("Failed to find user with username " + gatewayConfig.getSystemUsername() + ": service responded unsuccessful: " + response.getStatusCode());
- }
- if (response.getBody() == null) {
- log.error("Failed to find user with username {}: body is empty", gatewayConfig.getSystemUsername());
- throw new MetadataServiceException("Failed to find user with username " + gatewayConfig.getSystemUsername() + ": body is empty");
- }
- if (response.getBody().length != 1) {
- log.error("Failed to find system user: expected exactly one result but got {}", response.getBody().length);
- throw new MetadataServiceException("Failed to find system user: expected exactly one result but got " + response.getBody().length);
- }
- return response.getBody()[0].getId();
- }
-
@Override
public PrivilegedUserDto getPrivilegedUserById(UUID userId) throws RemoteUnavailableException, UserNotFoundException,
MetadataServiceException {
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/DataMapper.java b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/DataMapper.java
index 7a268f52487c55fed35ddd8576c78559d57792d1..ccb49288c5382cba306f3cc4cffe48ec139729b0 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/DataMapper.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/DataMapper.java
@@ -4,7 +4,6 @@ import at.tuwien.api.database.DatabaseDto;
import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.query.QueryDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.TableBriefDto;
import at.tuwien.api.database.table.TableDto;
import at.tuwien.api.database.table.TableHistoryDto;
@@ -24,13 +23,7 @@ import at.tuwien.api.user.UserDto;
import at.tuwien.config.QueryConfig;
import at.tuwien.exception.QueryNotFoundException;
import at.tuwien.exception.TableNotFoundException;
-import net.sf.jsqlparser.JSQLParserException;
-import net.sf.jsqlparser.parser.CCJSqlParserManager;
-import net.sf.jsqlparser.schema.Column;
-import net.sf.jsqlparser.schema.Table;
-import net.sf.jsqlparser.statement.select.*;
import org.apache.hadoop.shaded.com.google.common.hash.Hashing;
-import org.apache.hadoop.shaded.org.apache.commons.codec.binary.Hex;
import org.apache.hadoop.shaded.org.apache.commons.io.FileUtils;
import org.jetbrains.annotations.NotNull;
import org.mapstruct.Mapper;
@@ -40,15 +33,11 @@ import org.mapstruct.Mappings;
import java.io.File;
import java.io.IOException;
import java.io.InputStream;
-import java.io.StringReader;
-import java.math.BigInteger;
import java.nio.charset.StandardCharsets;
import java.sql.*;
-import java.time.LocalDate;
import java.time.LocalDateTime;
import java.time.ZoneId;
import java.time.format.DateTimeFormatter;
-import java.time.format.DateTimeFormatterBuilder;
import java.util.*;
import java.util.stream.Collectors;
@@ -210,161 +199,6 @@ public interface DataMapper {
return view;
}
- /**
- * Parse columns from a SQL statement of a known database.
- *
- * @param databaseId The database id.
- * @param tables The list of tables.
- * @param query The SQL statement.
- * @return The list of columns.
- * @throws JSQLParserException The table/view or column was not found in the database.
- */
- default List<ColumnDto> parseColumns(Long databaseId, List<TableDto> tables, String query) throws JSQLParserException {
- final List<ColumnDto> columns = new ArrayList<>();
- final CCJSqlParserManager parserRealSql = new CCJSqlParserManager();
- final net.sf.jsqlparser.statement.Statement statement = parserRealSql.parse(new StringReader(query));
- log.trace("parse columns from query: {}", query);
- /* bi-directional mapping */
- tables.forEach(table -> table.getColumns()
- .forEach(column -> column.setTable(table)));
- /* check */
- if (!(statement instanceof Select selectStatement)) {
- log.error("Query attempts to update the dataset, not a SELECT statement");
- throw new JSQLParserException("Query attempts to update the dataset");
- }
- /* start parsing */
- final PlainSelect ps = (PlainSelect) selectStatement.getSelectBody();
- final List<SelectItem> clauses = ps.getSelectItems();
- log.trace("columns referenced in the from-clause: {}", clauses);
- /* Parse all tables */
- final List<FromItem> fromItems = new ArrayList<>(fromItemToFromItems(ps.getFromItem()));
- if (ps.getJoins() != null && !ps.getJoins().isEmpty()) {
- log.trace("query contains join items: {}", ps.getJoins());
- for (net.sf.jsqlparser.statement.select.Join j : ps.getJoins()) {
- if (j.getRightItem() != null) {
- fromItems.add(j.getRightItem());
- }
- }
- }
- final List<ColumnDto> allColumns = tables.stream()
- .map(TableDto::getColumns)
- .flatMap(List::stream)
- .toList();
- log.trace("columns referenced in the from-clause and join-clause(s): {}", clauses);
- /* Checking if all columns exist */
- for (SelectItem clause : clauses) {
- final SelectExpressionItem item = (SelectExpressionItem) clause;
- final Column column = (Column) item.getExpression();
- final String columnName = column.getColumnName().replace("`", "");
- final List<ColumnDto> filteredColumns = allColumns.stream()
- .filter(c -> (c.getAlias() != null && c.getAlias().equals(columnName)) || c.getInternalName().equals(columnName))
- .toList();
- String tableOrView = null;
- for (Table t : fromItems.stream().map(t -> (net.sf.jsqlparser.schema.Table) t).toList()) {
- if (column.getTable() == null) {
- /* column does not reference a specific table, find out */
- final List<String> filteredTables = filteredColumns.stream()
- .map(c -> c.getTable().getInternalName())
- .filter(table -> fromItems.stream().map(f -> (Table) f).anyMatch(otherTable -> otherTable.getName().replace("`", "").equals(table)))
- .toList();
- if (filteredTables.size() != 1) {
- log.error("Failed to filter column {} to exactly one match: {}", columnName, filteredTables.stream().map(table -> table + "." + columnName).toList());
- throw new JSQLParserException("Failed to filter column " + columnName + " to exactly one match");
- }
- if (tableMatches(t, filteredTables.get(0))) {
- tableOrView = t.getName().replace("`", "");
- break;
- }
- }
- /* column references a specific table */
- final String tableOrAlias = (t.getAlias() != null ? t.getAlias().getName() : column.getTable().getName())
- .replace("`", "");
- if (tableMatches(t, tableOrAlias)) {
- tableOrView = t.getName().replace("`", "");
- break;
- }
- }
- if (tableOrView == null) {
- log.error("Failed to find table/view {} (with designator {})", column.getTable().getName(), column.getTable().getAlias());
- throw new JSQLParserException("Failed to find table/view " + column.getTable().getName() + " (with alias " + column.getTable().getAlias() + ")");
- }
- final String finalTableOrView = tableOrView;
- final List<ColumnDto> selectColumns = filteredColumns.stream()
- .filter(c -> c.getTable().getInternalName().equals(finalTableOrView))
- .toList();
- final ColumnDto resultColumn;
- if (selectColumns.size() != 1) {
- if (filteredColumns.size() != 1) {
- log.error("Failed to filter column {} to exactly one match: {}", columnName, selectColumns.stream().map(c -> c.getTable().getInternalName() + "." + c.getInternalName()).toList());
- throw new JSQLParserException("Failed to filter column " + columnName + " to exactly one match");
- }
- resultColumn = filteredColumns.get(0);
- } else {
- resultColumn = selectColumns.get(0);
- }
- if (item.getAlias() != null) {
- resultColumn.setAlias(item.getAlias().getName().replace("`", ""));
- }
- resultColumn.setDatabaseId(databaseId);
- resultColumn.setTable(resultColumn.getTable());
- resultColumn.setTableId(resultColumn.getTable().getId());
- log.trace("found column with internal name {} and alias {}", resultColumn.getInternalName(), resultColumn.getAlias());
- columns.add(resultColumn);
- }
- return columns;
- }
-
- default boolean tableMatches(net.sf.jsqlparser.schema.Table table, String tableOrDesignator) {
- final String tableName = table.getName()
- .trim()
- .replace("`", "");
- if (table.getAlias() == null) {
- /* table does not have designator */
- log.trace("table '{}' has no designator", tableName);
- return tableName.equals(tableOrDesignator);
- }
- /* has designator */
- final String designator = table.getAlias()
- .getName()
- .trim()
- .replace("`", "");
- log.trace("table '{}' has designator {}", tableName, designator);
- return designator.equals(tableOrDesignator);
- }
-
- default List<FromItem> fromItemToFromItems(FromItem data) throws JSQLParserException {
- return fromItemToFromItems(data, 0);
- }
-
- default List<FromItem> fromItemToFromItems(FromItem data, Integer level) throws JSQLParserException {
- final List<FromItem> fromItems = new LinkedList<>();
- if (data instanceof net.sf.jsqlparser.schema.Table table) {
- fromItems.add(data);
- log.trace("from-item {} is of type table: level ~> {}", table.getName(), level);
- return fromItems;
- }
- if (data instanceof SubJoin subJoin) {
- log.trace("from-item is of type sub-join: level ~> {}", level);
- for (Join join : subJoin.getJoinList()) {
- final List<FromItem> tmp = fromItemToFromItems(join.getRightItem(), level + 1);
- if (tmp == null) {
- log.error("Failed to find right sub-join table: {}", join.getRightItem());
- throw new JSQLParserException("Failed to find right sub-join table");
- }
- fromItems.addAll(tmp);
- }
- final List<FromItem> tmp = fromItemToFromItems(subJoin.getLeft(), level + 1);
- if (tmp == null) {
- log.error("Failed to find left sub-join table: {}", subJoin.getLeft());
- throw new JSQLParserException("Failed to find left sub-join table");
- }
- fromItems.addAll(tmp);
- return fromItems;
- }
- log.warn("unknown from-item {}", data);
- return null;
- }
-
default QueryDto resultSetToQueryDto(@NotNull ResultSet data) throws SQLException, QueryNotFoundException {
/* note that next() is called outside this mapping function */
return QueryDto.builder()
@@ -520,98 +354,6 @@ public interface DataMapper {
return table;
}
- default Object dataColumnToObject(Object data, ColumnDto column) {
- if (data == null) {
- return null;
- }
- /* boolean encoding fix */
- if (column.getColumnType().equals(ColumnTypeDto.TINYINT) && column.getSize() == 1) {
- column.setColumnType(ColumnTypeDto.BOOL);
- }
- switch (column.getColumnType()) {
- case DATE -> {
- final DateTimeFormatter formatter = new DateTimeFormatterBuilder()
- .parseCaseInsensitive() /* case insensitive to parse JAN and FEB */
- .appendPattern("yyyy-MM-dd")
- .toFormatter(Locale.ENGLISH);
- final LocalDate date = LocalDate.parse(String.valueOf(data), formatter);
- return date.atStartOfDay(ZoneId.of("UTC"))
- .toInstant();
- }
- case TIMESTAMP, DATETIME -> {
- return Timestamp.valueOf(data.toString())
- .toInstant();
- }
- case BINARY, VARBINARY, BIT -> {
- return Long.parseLong(String.valueOf(data), 2);
- }
- case TEXT, CHAR, VARCHAR, TINYTEXT, MEDIUMTEXT, LONGTEXT, ENUM, SET -> {
- return String.valueOf(data);
- }
- case BIGINT, SERIAL -> {
- return new BigInteger(String.valueOf(data));
- }
- case INT, SMALLINT, MEDIUMINT, TINYINT -> {
- return Integer.parseInt(String.valueOf(data));
- }
- case DECIMAL, FLOAT, DOUBLE -> {
- return Double.valueOf(String.valueOf(data));
- }
- case BOOL -> {
- return Boolean.valueOf(String.valueOf(data));
- }
- case TIME -> {
- return String.valueOf(data);
- }
- case YEAR -> {
- final String date = String.valueOf(data);
- return Short.valueOf(date.substring(0, date.indexOf('-')));
- }
- }
- log.warn("column type {} is not known", column.getColumnType());
- throw new IllegalArgumentException("Column type not known");
- }
-
- default QueryResultDto resultListToQueryResultDto(List<ColumnDto> columns, ResultSet result) throws SQLException {
- log.trace("mapping result list to query result, columns.size={}", columns.size());
- final List<Map<String, Object>> resultList = new LinkedList<>();
- while (result.next()) {
- /* map the result set to the columns through the stored metadata in the metadata database */
- int[] idx = new int[]{1};
- final Map<String, Object> map = new HashMap<>();
- for (final ColumnDto column : columns) {
- final String columnOrAlias;
- if (column.getAlias() != null) {
- log.debug("column {} has alias {}", column.getInternalName(), column.getAlias());
- columnOrAlias = column.getAlias();
- } else {
- columnOrAlias = column.getInternalName();
- }
- if (List.of(ColumnTypeDto.BLOB, ColumnTypeDto.TINYBLOB, ColumnTypeDto.MEDIUMBLOB, ColumnTypeDto.LONGBLOB).contains(column.getColumnType())) {
- log.trace("column {} is of type {}", columnOrAlias, column.getColumnType().getType().toLowerCase());
- final Blob blob = result.getBlob(idx[0]++);
- final String value = blob == null ? null : Hex.encodeHexString(blob.getBytes(1, (int) blob.length())).toUpperCase();
- map.put(columnOrAlias, value);
- continue;
- }
- final Object object = dataColumnToObject(result.getObject(idx[0]++), column);
- map.put(columnOrAlias, object);
- }
- resultList.add(map);
- }
- final int[] idx = new int[]{0};
- final List<Map<String, Integer>> headers = columns.stream()
- .map(c -> (Map<String, Integer>) new LinkedHashMap<String, Integer>() {{
- put(c.getAlias() != null ? c.getAlias() : c.getInternalName(), idx[0]++);
- }})
- .toList();
- log.trace("created ordered header list: {}", headers);
- return QueryResultDto.builder()
- .result(resultList)
- .headers(headers)
- .build();
- }
-
default void prepareStatementWithColumnTypeObject(PreparedStatement ps, ColumnTypeDto columnType, int idx, Object value) throws SQLException {
switch (columnType) {
case BLOB, TINYBLOB, MEDIUMBLOB, LONGBLOB:
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MariaDbMapper.java b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MariaDbMapper.java
index 62a5fada07dd427822fb6ef39e697ccee71c8cdc..99480719fac1157771d81ae09e3c5160f501af59 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MariaDbMapper.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MariaDbMapper.java
@@ -221,12 +221,6 @@ public interface MariaDbMapper {
return statement;
}
- default String tableCreateDtoToCreateSequenceRawQuery(at.tuwien.api.database.table.internal.TableCreateDto data) {
- final String statement = "CREATE SEQUENCE IF NOT EXISTS `" + tableCreateDtoToSequenceName(data) + "` NOCACHE";
- log.trace("mapped create sequence statement: {}", statement);
- return statement;
- }
-
default String filterToGetQueriesRawQuery(Boolean filterPersisted) {
final StringBuilder statement = new StringBuilder("SELECT `id`, `created`, `created_by`, `query`, `query_hash`, `result_hash`, `result_number`, `is_persisted`, `executed` FROM `qs_queries`");
if (filterPersisted != null) {
@@ -427,6 +421,12 @@ public interface MariaDbMapper {
return statement.toString();
}
+ default String selectExistsTableOrViewRawQuery() {
+ final String statement = "SELECT IF((SELECT 1 FROM information_schema.TABLES WHERE TABLE_SCHEMA = ? AND TABLE_NAME = ?), 1, 0) AS `exists`";
+ log.trace("mapped select exists table or view statement: {}", statement);
+ return statement;
+ }
+
default Long resultSetToNumber(ResultSet data) throws QueryMalformedException, SQLException {
if (!data.next()) {
throw new QueryMalformedException("Failed to map number");
@@ -434,38 +434,23 @@ public interface MariaDbMapper {
return data.getLong(1);
}
- /**
- * Selects the dataset page from a table/view.
- *
- * @param databaseName The database internal name.
- * @param tableOrView The table/view internal name.
- * @param columns The columns that should be contained in the result set.
- * @param timestamp The moment in time the data should be returned in UTC timezone.
- * @return The raw SQL query.
- */
- default String selectDatasetRawQuery(String databaseName, String tableOrView, List<ColumnDto> columns,
- Instant timestamp, Long size, Long page) {
- final StringBuilder statement = new StringBuilder("SELECT ")
- .append(String.join(",", columns.stream().map(c -> "`" + c.getInternalName() + "`").toList()));
- statement.append(" FROM `")
- .append(databaseName)
- .append("`.`")
- .append(tableOrView)
- .append("`");
- if (timestamp != null) {
- statement.append(" FOR SYSTEM_TIME AS OF TIMESTAMP '")
- .append(mariaDbFormatter.format(timestamp))
- .append("'");
+ default Boolean resultSetToBoolean(ResultSet data) throws QueryMalformedException, SQLException {
+ if (!data.next()) {
+ throw new QueryMalformedException("Failed to map boolean");
}
- log.trace("pagination size/limit of {}", size);
- statement.append(" LIMIT ")
- .append(size);
- log.trace("pagination page/offset of {}", page);
- statement.append(" OFFSET ")
- .append(page * size)
- .append(";");
- log.trace("mapped select data query: {}", statement);
- return statement.toString();
+ return data.getBoolean(1);
+ }
+
+ default List<Map<String, Object>> resultSetToList(ResultSet data, List<String> columns) throws SQLException {
+ final List<Map<String, Object>> list = new LinkedList<>();
+ while (data.next()) {
+ final Map<String, Object> tuple = new HashMap<>();
+ for (String column : columns) {
+ tuple.put(column, data.getString(column));
+ }
+ list.add(tuple);
+ }
+ return list;
}
/**
@@ -492,53 +477,6 @@ public interface MariaDbMapper {
return "DROP TABLE `" + tableName + "`;";
}
- default String tableOrViewToRawExportQuery(String databaseName, String tableOrView, List<String> columns,
- Instant timestamp) {
- final StringBuilder statement = new StringBuilder("(SELECT ");
- int[] jdx = new int[]{0};
- columns.forEach(column -> {
- statement.append(jdx[0] != 0 ? "," : "")
- .append("`")
- .append(column)
- .append("`");
- jdx[0]++;
- });
- statement.append(" FROM `")
- .append(databaseName)
- .append("`.`")
- .append(tableOrView)
- .append("`");
- if (timestamp != null) {
- log.trace("export has timestamp present");
- statement.append(" FOR SYSTEM_TIME AS OF TIMESTAMP'")
- .append(mariaDbFormatter.format(timestamp))
- .append("'");
- }
- statement.append(") as tbl_alias");
- log.debug("mapped table/view export query: {}", statement);
- return statement.toString();
- }
-
- default String subsetToRawTemporaryViewQuery(String viewName, String query) {
- final StringBuilder statement = new StringBuilder("CREATE VIEW `")
- .append(viewName)
- .append("` AS (")
- .append(query)
- .append(");");
- log.debug("mapped temporary view query: {}", statement);
- return statement.toString();
- }
-
- default String subsetToRawExportQuery(String viewName, Instant timestamp) {
- final StringBuilder statement = new StringBuilder("(SELECT * FROM `")
- .append(viewName)
- .append("` FOR SYSTEM_TIME AS OF TIMESTAMP'")
- .append(mariaDbFormatter.format(timestamp))
- .append("') as tbl");
- log.debug("mapped export query: {}", statement);
- return statement.toString();
- }
-
default String temporaryTableToRawMergeQuery(String tmp, String table, List<String> columns) {
final StringBuilder statement = new StringBuilder("INSERT INTO `")
.append(table)
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MetadataMapper.java b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MetadataMapper.java
index a585f2e98ad8d39b4c0c290ae9c48fc8840f7581..fb59360e9740914c0b1309b2546c3f55b9909c4d 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MetadataMapper.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/mapper/MetadataMapper.java
@@ -9,6 +9,7 @@ import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
+import at.tuwien.api.database.query.QueryDto;
import at.tuwien.api.database.table.TableBriefDto;
import at.tuwien.api.database.table.TableDto;
import at.tuwien.api.database.table.columns.ColumnDto;
@@ -25,6 +26,10 @@ public interface MetadataMapper {
org.slf4j.Logger log = org.slf4j.LoggerFactory.getLogger(MetadataMapper.class);
+ default String queryDtoToViewName(QueryDto subset) {
+ return subset.getQueryHash();
+ }
+
PrivilegedContainerDto containerDtoToPrivilegedContainerDto(ContainerDto data);
DatabaseDto privilegedDatabaseDtoToDatabaseDto(PrivilegedDatabaseDto data);
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/SubsetService.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/SubsetService.java
index 938da8820c829113193be4e5fd95d2e20e0c0029..4a3455fbc4e10f9632148fbe12e92f4298973f9d 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/SubsetService.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/SubsetService.java
@@ -1,13 +1,9 @@
package at.tuwien.service;
-import at.tuwien.ExportResourceDto;
-import at.tuwien.api.SortTypeDto;
import at.tuwien.api.container.internal.PrivilegedContainerDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.QueryDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.exception.*;
-import jakarta.validation.constraints.NotNull;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Row;
@@ -30,49 +26,34 @@ public interface SubsetService {
QueryStoreCreateException;
/**
- * Creates a subset from the given statement at given time in the given database.
+ * Retrieve data from a subset in a database and optionally paginate with number of page and size of results.
*
- * @param database The database.
- * @param statement The subset statement.
- * @param timestamp The timestamp as of which the data is queried. If smaller than <now>, historic data is queried.
- * @param userId The user id of the creating user.
- * @param page The page number. Optional but requires size to be set too.
- * @param size The page size. Optional but requires page to be set too.
- * @param sortDirection The sort direction.
- * @param sortColumn The column that is sorted.
- * @return The query result.
- * @throws QueryStoreInsertException The query store refused to insert the query.
- * @throws SQLException The connection to the database could not be established.
- * @throws QueryNotFoundException The query was not found for re-execution.
- * @throws TableMalformedException The table is malformed.
- * @throws UserNotFoundException The user was not found.
- * @throws NotAllowedException The operation is not allowed.
- * @throws RemoteUnavailableException The privileged database information could not be found in the Metadata Service.
- * @throws DatabaseNotFoundException The database was not found in the Metadata Service.
- * @throws MetadataServiceException The Metadata Service responded unexpected.
+ * @param database The database.
+ * @param subset The subset.
+ * @param page The page number.
+ * @param size Te result size.
+ * @return The data.
+ * @throws ViewMalformedException The view is malformed.
+ * @throws SQLException The connection to the database could not be established.
+ * @throws QueryMalformedException The mapped query produced a database error.
+ * @throws TableNotFoundException The database table is malformed.
*/
- QueryResultDto execute(PrivilegedDatabaseDto database, String statement, Instant timestamp, UUID userId, Long page,
- Long size, SortTypeDto sortDirection, String sortColumn)
- throws QueryStoreInsertException, SQLException, QueryNotFoundException, TableMalformedException,
- UserNotFoundException, NotAllowedException, RemoteUnavailableException, DatabaseNotFoundException,
- MetadataServiceException;
+ Dataset<Row> getData(PrivilegedDatabaseDto database, QueryDto subset, Long page, Long size)
+ throws ViewMalformedException, SQLException, QueryMalformedException, TableNotFoundException;
/**
- * Re-executes the query of a given subset in the given database.
+ * Creates a subset from the given statement at given time in the given database.
*
- * @param database The database.
- * @param query The subset.
- * @param page The page number. Optional but requires size to be set too.
- * @param size The page size. Optional but requires page to be set too.
- * @param sortDirection The sort direction.
- * @param sortColumn The column that is sorted.
- * @return The query result.
- * @throws TableMalformedException The table is malformed.
- * @throws SQLException The connection to the database could not be established.
+ * @param database The database.
+ * @param statement The subset statement.
+ * @param timestamp The timestamp as of which the data is queried. If smaller than <now>, historic data is queried.
+ * @param userId The user id of the creating user.
+ * @return The query id.
+ * @throws QueryStoreInsertException The query store refused to insert the query.
+ * @throws SQLException The connection to the database could not be established.
*/
- QueryResultDto reExecute(PrivilegedDatabaseDto database, QueryDto query, Long page, Long size,
- SortTypeDto sortDirection, String sortColumn) throws TableMalformedException,
- SQLException;
+ Long create(PrivilegedDatabaseDto database, String statement, Instant timestamp, UUID userId)
+ throws QueryStoreInsertException, SQLException;
/**
* Counts the subset row count of a query of a given subset in the given database.
@@ -101,23 +82,6 @@ public interface SubsetService {
List<QueryDto> findAll(PrivilegedDatabaseDto database, Boolean filterPersisted) throws SQLException,
QueryNotFoundException, RemoteUnavailableException, DatabaseNotFoundException, MetadataServiceException;
- /**
- * Exports a subset by re-executing the query in a given database with given timestamp to a given s3key.
- *
- * @param database The database.
- * @param query The query.
- * @param timestamp The timestamp.
- * @return The exported subset.
- * @throws SQLException The connection to the database could not be established.
- * @throws QueryMalformedException The mapped export query produced a database error.
- * @throws StorageNotFoundException The exported subset was not found from the key provided by the sidecar in the Storage Service.
- * @throws StorageUnavailableException The communication to the Storage Service failed.
- * @throws RemoteUnavailableException The privileged database information could not be found in the Metadata Service.
- */
- ExportResourceDto export(PrivilegedDatabaseDto database, QueryDto query, Instant timestamp) throws SQLException,
- QueryMalformedException, StorageNotFoundException, StorageUnavailableException, RemoteUnavailableException,
- ViewNotFoundException, MalformedException;
-
/**
* Executes a subset query without saving it.
*
@@ -181,7 +145,4 @@ public interface SubsetService {
* @throws QueryStoreGCException The query store failed to delete stale queries.
*/
void deleteStaleQueries(PrivilegedDatabaseDto database) throws SQLException, QueryStoreGCException;
-
- Dataset<Row> getData(@NotNull PrivilegedDatabaseDto database, String viewName, Instant timestamp) throws ViewNotFoundException,
- QueryMalformedException;
}
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/TableService.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/TableService.java
index c70d1b703f714f9201aa8ffb972763aca1c72691..dc0b2041f04dad9fb6fb5246b5ac6c098f2a1edf 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/TableService.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/TableService.java
@@ -1,14 +1,12 @@
package at.tuwien.service;
-import at.tuwien.ExportResourceDto;
+import at.tuwien.api.SortTypeDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.ImportDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.*;
import at.tuwien.api.database.table.internal.PrivilegedTableDto;
import at.tuwien.api.database.table.internal.TableCreateDto;
import at.tuwien.exception.*;
-import jakarta.validation.constraints.NotNull;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Row;
@@ -78,20 +76,6 @@ public interface TableService {
*/
void delete(PrivilegedTableDto table) throws SQLException, QueryMalformedException;
- /**
- * Obtains data from a table with given table object at timestamp, loaded as page number and length size.
- *
- * @param table The table object.
- * @param timestamp The timestamp.
- * @param page The page number.
- * @param size The page size/length.
- * @return The data.
- * @throws SQLException Failed to parse SQL query, contains invalid syntax.
- * @throws TableMalformedException The table schema is malformed, likely due to a bug in the application.
- */
- QueryResultDto getPaginatedData(PrivilegedTableDto table, Instant timestamp, Long page, Long size)
- throws SQLException, TableMalformedException;
-
/**
* Obtains the table history for a given table object.
*
@@ -168,28 +152,7 @@ public interface TableService {
void updateTuple(PrivilegedTableDto table, TupleUpdateDto data) throws SQLException,
QueryMalformedException, TableMalformedException;
- /**
- * Exports a table at given system-versioning time.
- *
- * @param table The table.
- * @param timestamp The system-versioning time.
- * @return The exported resource.
- * @throws TableNotFoundException The table was not found in the data database.
- * @throws QueryMalformedException The export query is malformed, likely due to a bug in the application.
- * @throws StorageUnavailableException Failed to establish a connection with the Storage Service.
- */
- ExportResourceDto exportDataset(PrivilegedTableDto table, Instant timestamp) throws TableNotFoundException,
- QueryMalformedException, StorageUnavailableException, MalformedException;
-
- /**
- * Get data from a given table at timestamp.
- *
- * @param table The table.
- * @param timestamp The timestamp.
- * @return The data.
- * @throws TableNotFoundException The table was not found in the data database.
- * @throws QueryMalformedException The export query is malformed, likely due to a bug in the application.
- */
- Dataset<Row> getData(@NotNull PrivilegedTableDto table, Instant timestamp) throws TableNotFoundException,
- QueryMalformedException;
+ Dataset<Row> getData(PrivilegedDatabaseDto database, String tableOrView, Instant timestamp,
+ Long page, Long size, SortTypeDto sortDirection, String sortColumn)
+ throws QueryMalformedException, TableNotFoundException;
}
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/ViewService.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/ViewService.java
index 26c04e401bb15945f1b438bd5af10beeccd470f7..ec7a723261372d1414f0590e74ef915bb62264f4 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/ViewService.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/ViewService.java
@@ -1,16 +1,14 @@
package at.tuwien.service;
-import at.tuwien.ExportResourceDto;
import at.tuwien.api.database.ViewCreateDto;
import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
-import at.tuwien.api.database.query.QueryResultDto;
-import at.tuwien.api.database.table.internal.PrivilegedTableDto;
-import at.tuwien.exception.*;
-import jakarta.validation.constraints.NotNull;
-import org.apache.spark.sql.Dataset;
-import org.apache.spark.sql.Row;
+import at.tuwien.api.database.query.QueryDto;
+import at.tuwien.exception.DatabaseMalformedException;
+import at.tuwien.exception.QueryMalformedException;
+import at.tuwien.exception.ViewMalformedException;
+import at.tuwien.exception.ViewNotFoundException;
import java.sql.SQLException;
import java.time.Instant;
@@ -18,6 +16,9 @@ import java.util.List;
public interface ViewService {
+ Boolean existsByName(PrivilegedDatabaseDto database, String name) throws SQLException,
+ QueryMalformedException;
+
/**
* Gets the metadata schema for a given database.
*
@@ -30,6 +31,16 @@ public interface ViewService {
List<ViewDto> getSchemas(PrivilegedDatabaseDto database) throws SQLException, DatabaseMalformedException,
ViewNotFoundException;
+ /**
+ * Creates a view if not already exists.
+ * @param database
+ * @param subset
+ * @return
+ * @throws ViewMalformedException
+ * @throws SQLException
+ */
+ ViewDto create(PrivilegedDatabaseDto database, QueryDto subset) throws ViewMalformedException, SQLException;
+
/**
* Creates a view in the given data database.
*
@@ -41,28 +52,15 @@ public interface ViewService {
ViewDto create(PrivilegedDatabaseDto database, ViewCreateDto data) throws SQLException,
ViewMalformedException;
- /**
- * Get data from the given view at specific timestamp, paginated by page and size.
- *
- * @param view The view.
- * @param timestamp The timestamp.
- * @param page The page number.
- * @param size The page size.
- * @return The data, if successful.
- * @throws SQLException The connection to the data database was unsuccessful.
- * @throws ViewMalformedException The query is malformed and was rejected by the data database.
- */
- QueryResultDto data(PrivilegedViewDto view, Instant timestamp, Long page, Long size) throws SQLException,
- ViewMalformedException;
-
/**
* Deletes a view.
*
- * @param view The view.
+ * @param database The database.
+ * @param viewName The view name.
* @throws SQLException The connection to the data database was unsuccessful.
* @throws ViewMalformedException The query is malformed and was rejected by the data database.
*/
- void delete(PrivilegedViewDto view) throws SQLException, ViewMalformedException;
+ void delete(PrivilegedDatabaseDto database, String viewName) throws SQLException, ViewMalformedException;
/**
* Counts tuples in a view at system-versioned timestamp.
@@ -74,27 +72,4 @@ public interface ViewService {
* @throws QueryMalformedException The query is malformed and was rejected by the data database.
*/
Long count(PrivilegedViewDto view, Instant timestamp) throws SQLException, QueryMalformedException;
-
- /**
- * Exports view data into a dataset.
- *
- * @param view The view.
- * @return The dataset.
- * @throws QueryMalformedException The query is malformed and was rejected by the data database.
- * @throws StorageUnavailableException Failed to establish a connection with the Storage Service.
- * @throws ViewNotFoundException The view with given name was not found.
- */
- ExportResourceDto exportDataset(PrivilegedViewDto view) throws QueryMalformedException,
- StorageUnavailableException, ViewNotFoundException, MalformedException;
-
- /**
- * Get data from a given view.
- *
- * @param view The view.
- * @return The data.
- * @throws ViewNotFoundException The view with given name was not found.
- * @throws QueryMalformedException The query is malformed and was rejected by the data database.
- */
- Dataset<Row> getData(@NotNull PrivilegedViewDto view) throws ViewNotFoundException,
- QueryMalformedException;
}
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/AccessServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/AccessServiceMariaDbImpl.java
index 7ed5150095a1320c29cfd92ff9687eeab8ef57ee..1493f579fdb6cfc9e5429a27ea6e44314a5d8760 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/AccessServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/AccessServiceMariaDbImpl.java
@@ -43,22 +43,22 @@ public class AccessServiceMariaDbImpl extends HibernateConnector implements Acce
long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseCreateUserQuery(user.getUsername(), user.getPassword()))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* grant access */
final String grants = access != AccessTypeDto.READ ? grantDefaultWrite : grantDefaultRead;
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseGrantPrivilegesQuery(user.getUsername(), grants))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* grant query store */
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseGrantProcedureQuery(user.getUsername(), "store_query"))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* apply access rights */
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseFlushPrivilegesQuery());
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -82,7 +82,7 @@ public class AccessServiceMariaDbImpl extends HibernateConnector implements Acce
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseGrantPrivilegesQuery(user.getUsername(), grants))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* apply access rights */
connection.prepareStatement(mariaDbMapper.databaseFlushPrivilegesQuery());
connection.commit();
@@ -106,12 +106,12 @@ public class AccessServiceMariaDbImpl extends HibernateConnector implements Acce
long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseRevokePrivilegesQuery(user.getUsername()))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* apply access rights */
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseFlushPrivilegesQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceMariaDbImpl.java
index b2a9b0c8408953e0a694a1ae6d3e36c8ebfe485d..db446de2817b6f5499105856d5748202b1469b4b 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/DatabaseServiceMariaDbImpl.java
@@ -40,7 +40,7 @@ public class DatabaseServiceMariaDbImpl extends HibernateConnector implements Da
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseCreateDatabaseQuery(data.getInternalName()))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -76,7 +76,7 @@ public class DatabaseServiceMariaDbImpl extends HibernateConnector implements Da
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.databaseSetPasswordQuery(data.getUsername(), data.getPassword()))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/HibernateConnector.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/HibernateConnector.java
index e2d085ae98c60b2ee0cc0b852fc9954b542d3413..b52d1c792ec25856209e33be2c5fa6dce4996f80 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/HibernateConnector.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/HibernateConnector.java
@@ -2,26 +2,10 @@ package at.tuwien.service.impl;
import at.tuwien.api.container.internal.PrivilegedContainerDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
-import at.tuwien.api.database.table.internal.PrivilegedTableDto;
-import at.tuwien.config.S3Config;
-import at.tuwien.exception.QueryMalformedException;
-import at.tuwien.exception.TableNotFoundException;
import com.mchange.v2.c3p0.ComboPooledDataSource;
-import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
-import org.apache.spark.SparkConf;
-import org.apache.spark.sql.Dataset;
-import org.apache.spark.sql.Row;
-import org.apache.spark.sql.SparkSession;
-import org.apache.spark.sql.catalyst.ExtendedAnalysisException;
-import org.springframework.context.annotation.Bean;
import org.springframework.stereotype.Service;
-import java.time.Instant;
-import java.util.HashMap;
-import java.util.Map;
-import java.util.Properties;
-
@Log4j2
@Service
public abstract class HibernateConnector {
@@ -45,23 +29,6 @@ public abstract class HibernateConnector {
return getPrivilegedDataSource(database.getContainer(), database.getInternalName());
}
- public Map<String, String> getPrivilegedDatabaseOptions(PrivilegedTableDto table) {
- return new HashMap<>() {{
- put("url", url(table.getDatabase().getContainer(), table.getDatabase().getInternalName()));
- put("dbtable", table.getInternalName());
- put("user", table.getDatabase().getContainer().getUsername());
- put("password", table.getDatabase().getContainer().getPassword());
- }};
- }
-
- public String getHibernateUrl(PrivilegedContainerDto container, String databaseName) {
- final StringBuilder sb = new StringBuilder(url(container, databaseName))
- .append("?currentSchema=")
- .append(databaseName);
- log.trace("mapped container to hibernate url: {}", sb.toString());
- return sb.toString();
- }
-
public String getSparkUrl(PrivilegedContainerDto container, String databaseName) {
final StringBuilder sb = new StringBuilder(url(container, databaseName))
.append("?sessionVariables=sql_mode='ANSI_QUOTES'");
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/QueueServiceRabbitMqImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/QueueServiceRabbitMqImpl.java
index 797de6567445ea6acdc45c656d8910f68084ac8b..aff85137870749a600d1e4c76ef317a978c6c54e 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/QueueServiceRabbitMqImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/QueueServiceRabbitMqImpl.java
@@ -52,7 +52,7 @@ public class QueueServiceRabbitMqImpl extends HibernateConnector implements Queu
}
final long start = System.currentTimeMillis();
preparedStatement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
log.trace("successfully inserted tuple");
amqpDataAccessCounter.increment();
} finally {
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SchemaServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SchemaServiceMariaDbImpl.java
index 1aba3c6b9942386f171c1a4fe029658667a633a1..370d86e2881fbea3abd8254693e80b605d32662e 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SchemaServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SchemaServiceMariaDbImpl.java
@@ -55,7 +55,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement1.setString(2, tableName);
log.trace("1={}, 2={}", database.getInternalName(), tableName);
TableDto table = dataMapper.schemaResultSetToTable(metadataMapper.privilegedDatabaseDtoToDatabaseDto(database), statement1.executeQuery());
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* obtain columns metadata */
start = System.currentTimeMillis();
final PreparedStatement statement2 = connection.prepareStatement(mariaDbMapper.databaseTableColumnsSelectRawQuery());
@@ -63,7 +63,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement2.setString(2, tableName);
log.trace("1={}, 2={}", database.getInternalName(), tableName);
final ResultSet resultSet2 = statement2.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
while (resultSet2.next()) {
table = dataMapper.resultSetToTable(resultSet2, table, queryConfig);
}
@@ -74,7 +74,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement3.setString(2, tableName);
log.trace("1={}, 2={}", database.getInternalName(), tableName);
final ResultSet resultSet3 = statement3.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
while (resultSet3.next()) {
final String clause = resultSet3.getString(1);
table.getConstraints()
@@ -89,7 +89,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement4.setString(2, tableName);
log.trace("1={}, 2={}", database.getInternalName(), tableName);
final ResultSet resultSet4 = statement4.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
while (resultSet4.next()) {
table = dataMapper.resultSetToConstraint(resultSet4, table);
for (UniqueDto uk : table.getConstraints().getUniques()) {
@@ -136,7 +136,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement1.setString(2, viewName);
log.trace("1={}, 2={}", database.getInternalName(), viewName);
final ResultSet resultSet1 = statement1.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
if (!resultSet1.next()) {
throw new ViewNotFoundException("Failed to find view in the information schema");
}
@@ -152,7 +152,7 @@ public class SchemaServiceMariaDbImpl extends HibernateConnector implements Sche
statement2.setString(2, viewName);
log.trace("1={}, 2={}", database.getInternalName(), viewName);
final ResultSet resultSet2 = statement2.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
TableDto tmp = TableDto.builder()
.columns(new LinkedList<>())
.build();
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SubsetServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SubsetServiceMariaDbImpl.java
index 8c5cc6d601a4165d4abc22c1a9ab1e0e94766656..1e1e78603ba219e0f929a65e40efad6557f6f1ae 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SubsetServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/SubsetServiceMariaDbImpl.java
@@ -1,13 +1,8 @@
package at.tuwien.service.impl;
-import at.tuwien.ExportResourceDto;
-import at.tuwien.api.SortTypeDto;
import at.tuwien.api.container.internal.PrivilegedContainerDto;
-import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.QueryDto;
-import at.tuwien.api.database.query.QueryResultDto;
-import at.tuwien.api.database.table.columns.ColumnDto;
import at.tuwien.api.identifier.IdentifierDto;
import at.tuwien.api.identifier.IdentifierTypeDto;
import at.tuwien.exception.*;
@@ -15,56 +10,42 @@ import at.tuwien.gateway.MetadataServiceGateway;
import at.tuwien.mapper.DataMapper;
import at.tuwien.mapper.MariaDbMapper;
import at.tuwien.mapper.MetadataMapper;
-import at.tuwien.service.SchemaService;
-import at.tuwien.service.StorageService;
import at.tuwien.service.SubsetService;
+import at.tuwien.service.TableService;
+import at.tuwien.service.ViewService;
import com.mchange.v2.c3p0.ComboPooledDataSource;
-import io.micrometer.core.instrument.Counter;
-import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
-import net.sf.jsqlparser.JSQLParserException;
-import org.apache.commons.lang3.RandomUtils;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Row;
-import org.apache.spark.sql.SparkSession;
-import org.apache.spark.sql.catalyst.ExtendedAnalysisException;
-import org.sparkproject.guava.hash.Hashing;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
-import java.nio.charset.Charset;
import java.sql.*;
import java.time.Instant;
import java.util.LinkedList;
import java.util.List;
-import java.util.Properties;
import java.util.UUID;
@Log4j2
@Service
public class SubsetServiceMariaDbImpl extends HibernateConnector implements SubsetService {
- private final Counter httpDataAccessCounter;
private final DataMapper dataMapper;
- private final SparkSession sparkSession;
+ private final ViewService viewService;
+ private final TableService tableService;
private final MariaDbMapper mariaDbMapper;
- private final SchemaService schemaService;
private final MetadataMapper metadataMapper;
- private final StorageService storageService;
private final MetadataServiceGateway metadataServiceGateway;
@Autowired
- public SubsetServiceMariaDbImpl(Counter httpDataAccessCounter, DataMapper dataMapper, SparkSession sparkSession,
- MariaDbMapper mariaDbMapper, SchemaService schemaService,
- MetadataMapper metadataMapper, StorageService storageService,
+ public SubsetServiceMariaDbImpl(DataMapper dataMapper, ViewService viewService, TableService tableService,
+ MariaDbMapper mariaDbMapper, MetadataMapper metadataMapper,
MetadataServiceGateway metadataServiceGateway) {
- this.httpDataAccessCounter = httpDataAccessCounter;
this.dataMapper = dataMapper;
- this.sparkSession = sparkSession;
+ this.viewService = viewService;
+ this.tableService = tableService;
this.mariaDbMapper = mariaDbMapper;
- this.schemaService = schemaService;
this.metadataMapper = metadataMapper;
- this.storageService = storageService;
this.metadataServiceGateway = metadataServiceGateway;
}
@@ -78,23 +59,23 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreCreateSequenceRawQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreCreateTableRawQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreCreateHashTableProcedureRawQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreCreateStoreQueryProcedureRawQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreCreateInternalStoreQueryProcedureRawQuery())
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -107,32 +88,21 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
}
@Override
- public QueryResultDto execute(PrivilegedDatabaseDto database, String statement, Instant timestamp,
- UUID userId, Long page, Long size, SortTypeDto sortDirection, String sortColumn)
- throws QueryStoreInsertException, SQLException, QueryNotFoundException, TableMalformedException,
- UserNotFoundException, NotAllowedException, RemoteUnavailableException, DatabaseNotFoundException,
- MetadataServiceException {
- final Long queryId = storeQuery(database, statement, timestamp, userId);
- final QueryDto query = findById(database, queryId);
- httpDataAccessCounter.increment();
- return reExecute(database, query, page, size, sortDirection, sortColumn);
+ public Dataset<Row> getData(PrivilegedDatabaseDto database, QueryDto subset, Long page, Long size)
+ throws ViewMalformedException, SQLException, QueryMalformedException, TableNotFoundException {
+ if (!viewService.existsByName(database, metadataMapper.queryDtoToViewName(subset))) {
+ log.warn("Missing internal view {} for subset with id {}: create it from subset query", metadataMapper.queryDtoToViewName(subset), subset.getId());
+ viewService.create(database, subset);
+ } else {
+ log.debug("internal view {} for subset with id {} exists", metadataMapper.queryDtoToViewName(subset), subset.getId());
+ }
+ return tableService.getData(database, metadataMapper.queryDtoToViewName(subset), subset.getExecution(), page, size, null, null);
}
@Override
- public QueryResultDto reExecute(PrivilegedDatabaseDto database, QueryDto query, Long page, Long size,
- SortTypeDto sortDirection, String sortColumn) throws TableMalformedException,
- SQLException {
- final List<ColumnDto> columns;
- try {
- columns = dataMapper.parseColumns(database.getId(), database.getTables(), query.getQuery());
- } catch (JSQLParserException e) {
- log.error("Failed to map/parse columns: {}", e.getMessage());
- throw new TableMalformedException("Failed to map/parse columns: " + e.getMessage(), e);
- }
- final String statement = mariaDbMapper.selectRawSelectQuery(query.getQuery(), query.getExecution(), page, size);
- final QueryResultDto dto = executeNonPersistent(database, statement, columns);
- dto.setId(query.getId());
- return dto;
+ public Long create(PrivilegedDatabaseDto database, String statement, Instant timestamp, UUID userId)
+ throws QueryStoreInsertException, SQLException {
+ return storeQuery(database, statement, timestamp, userId);
}
@Override
@@ -155,7 +125,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
log.trace("filter persisted only {}", filterPersisted);
}
final ResultSet resultSet = statement.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
final List<QueryDto> queries = new LinkedList<>();
while (resultSet.next()) {
final QueryDto query = dataMapper.resultSetToQueryDto(resultSet);
@@ -175,70 +145,6 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
}
}
- @Override
- public ExportResourceDto export(PrivilegedDatabaseDto database, QueryDto query, Instant timestamp)
- throws SQLException, QueryMalformedException, StorageNotFoundException, StorageUnavailableException,
- RemoteUnavailableException, ViewNotFoundException, MalformedException {
- final String viewName = "ex_" + Hashing.sha512()
- .hashString(new String(RandomUtils.nextBytes(256), Charset.defaultCharset()), Charset.defaultCharset())
- .toString()
- .substring(0, 60);
- final ExportResourceDto export;
- final ComboPooledDataSource dataSource = getPrivilegedDataSource(database);
- final Connection connection = dataSource.getConnection();
- try {
- /* export to data database sidecar */
- long start = System.currentTimeMillis();
- connection.prepareStatement(mariaDbMapper.subsetToRawTemporaryViewQuery(viewName, query.getQuery()))
- .executeUpdate();
- log.debug("executed create view statement in {} ms", System.currentTimeMillis() - start);
- start = System.currentTimeMillis();
- final List<String> columns = schemaService.inspectView(database, viewName)
- .getColumns()
- .stream()
- .map(ViewColumnDto::getInternalName)
- .toList();
- log.debug("executed inspect view columns statement in {} ms", System.currentTimeMillis() - start);
- start = System.currentTimeMillis();
- final Dataset<Row> dataset = getData(database, viewName, timestamp)
- .selectExpr(columns.toArray(new String[0]));
- export = storageService.transformDataset(dataset);
- log.debug("executed extract statement in {} ms", System.currentTimeMillis() - start);
- start = System.currentTimeMillis();
- connection.prepareStatement(mariaDbMapper.dropViewRawQuery(viewName))
- .executeUpdate();
- log.debug("executed drop view statement in {} ms", System.currentTimeMillis() - start);
- connection.commit();
- } catch (SQLException e) {
- connection.rollback();
- log.error("Failed to execute query: {}", e.getMessage());
- throw new QueryMalformedException("Failed to execute query: " + e.getMessage(), e);
- } finally {
- dataSource.close();
- }
- httpDataAccessCounter.increment();
- return export;
- }
-
- public QueryResultDto executeNonPersistent(PrivilegedDatabaseDto database, String statement,
- List<ColumnDto> columns) throws SQLException, TableMalformedException {
- final ComboPooledDataSource dataSource = getPrivilegedDataSource(database);
- final Connection connection = dataSource.getConnection();
- try {
- final long start = System.currentTimeMillis();
- final PreparedStatement preparedStatement = connection.prepareStatement(statement);
- final ResultSet resultSet = preparedStatement.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
- httpDataAccessCounter.increment();
- return dataMapper.resultListToQueryResultDto(columns, resultSet);
- } catch (SQLException e) {
- log.error("Failed to execute and map time-versioned query: {}", e.getMessage());
- throw new TableMalformedException("Failed to execute and map time-versioned query: " + e.getMessage(), e);
- } finally {
- dataSource.close();
- }
- }
-
@Override
public Long executeCountNonPersistent(PrivilegedDatabaseDto database, String statement, Instant timestamp)
throws SQLException, QueryMalformedException, TableMalformedException {
@@ -248,8 +154,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
final long start = System.currentTimeMillis();
final ResultSet resultSet = connection.prepareStatement(mariaDbMapper.countRawSelectQuery(statement, timestamp))
.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
- httpDataAccessCounter.increment();
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
return mariaDbMapper.resultSetToNumber(resultSet);
} catch (SQLException e) {
log.error("Failed to map object: {}", e.getMessage());
@@ -261,7 +166,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
@Override
public QueryDto findById(PrivilegedDatabaseDto database, Long queryId) throws QueryNotFoundException, SQLException,
- RemoteUnavailableException, UserNotFoundException, DatabaseNotFoundException, MetadataServiceException {
+ RemoteUnavailableException, DatabaseNotFoundException, MetadataServiceException {
final ComboPooledDataSource dataSource = getPrivilegedDataSource(database);
final Connection connection = dataSource.getConnection();
try {
@@ -269,7 +174,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
final PreparedStatement preparedStatement = connection.prepareStatement(mariaDbMapper.queryStoreFindQueryRawQuery());
preparedStatement.setLong(1, queryId);
final ResultSet resultSet = preparedStatement.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
if (!resultSet.next()) {
throw new QueryNotFoundException("Failed to find query");
}
@@ -306,7 +211,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
callableStatement.setTimestamp(3, Timestamp.from(timestamp));
callableStatement.registerOutParameter(4, Types.BIGINT);
callableStatement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
queryId = callableStatement.getLong(4);
callableStatement.close();
log.info("Stored query with id {} in database with name {}", queryId, database.getInternalName());
@@ -333,7 +238,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
preparedStatement.setBoolean(1, persist);
preparedStatement.setLong(2, queryId);
preparedStatement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
} catch (SQLException e) {
log.error("Failed to (un-)persist query: {}", e.getMessage());
throw new QueryStorePersistException("Failed to (un-)persist query", e);
@@ -351,7 +256,7 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.queryStoreDeleteStaleQueriesRawQuery())
.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
} catch (SQLException e) {
log.error("Failed to delete stale queries: {}", e.getMessage());
throw new QueryStoreGCException("Failed to delete stale queries: " + e.getMessage(), e);
@@ -360,27 +265,4 @@ public class SubsetServiceMariaDbImpl extends HibernateConnector implements Subs
}
}
- @Override
- public Dataset<Row> getData(@NotNull PrivilegedDatabaseDto database, String viewName, Instant timestamp)
- throws ViewNotFoundException, QueryMalformedException {
- log.debug("get data from view: {}", viewName);
- try {
- final Properties properties = new Properties();
- properties.setProperty("user", database.getContainer().getUsername());
- properties.setProperty("password", database.getContainer().getPassword());
- return sparkSession.read()
- .jdbc(getSparkUrl(database.getContainer(), database.getInternalName()),
- mariaDbMapper.subsetToRawExportQuery(viewName, timestamp), properties);
- } catch (Exception e) {
- if (e instanceof ExtendedAnalysisException exception) {
- if (exception.getSimpleMessage().contains("TABLE_OR_VIEW_NOT_FOUND")) {
- log.error("Failed to find temporary view {}: {}", viewName, exception.getSimpleMessage());
- throw new ViewNotFoundException("Failed to find temporary view " + viewName + ": " + exception.getSimpleMessage()) /* remove throwable on purpose, clutters the output */;
- }
- }
- log.error("Failed to find get data from view: {}", e.getMessage());
- throw new QueryMalformedException("Failed to find get data from view: " + e.getMessage(), e);
- }
- }
-
}
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/TableServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/TableServiceMariaDbImpl.java
index 0eea223f7e450ad54efba1cd28063b116ea9afe9..4e7aa7dcfafb614e05928749f08a699d0ba34942 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/TableServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/TableServiceMariaDbImpl.java
@@ -1,9 +1,8 @@
package at.tuwien.service.impl;
-import at.tuwien.ExportResourceDto;
+import at.tuwien.api.SortTypeDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.query.ImportDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.*;
import at.tuwien.api.database.table.columns.ColumnDto;
import at.tuwien.api.database.table.columns.ColumnStatisticDto;
@@ -18,8 +17,6 @@ import at.tuwien.service.StorageService;
import at.tuwien.service.TableService;
import at.tuwien.utils.MariaDbUtil;
import com.mchange.v2.c3p0.ComboPooledDataSource;
-import io.micrometer.core.instrument.Counter;
-import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
import org.apache.spark.sql.*;
import org.apache.spark.sql.catalyst.ExtendedAnalysisException;
@@ -37,7 +34,6 @@ import java.util.*;
@Service
public class TableServiceMariaDbImpl extends HibernateConnector implements TableService {
- private final Counter httpDataAccessCounter;
private final DataMapper dataMapper;
private final SparkSession sparkSession;
private final MariaDbMapper mariaDbMapper;
@@ -45,10 +41,8 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
private final StorageService storageService;
@Autowired
- public TableServiceMariaDbImpl(Counter httpDataAccessCounter, DataMapper dataMapper, SparkSession sparkSession,
- MariaDbMapper mariaDbMapper, SchemaService schemaService,
- StorageService storageService) {
- this.httpDataAccessCounter = httpDataAccessCounter;
+ public TableServiceMariaDbImpl(DataMapper dataMapper, SparkSession sparkSession, MariaDbMapper mariaDbMapper,
+ SchemaService schemaService, StorageService storageService) {
this.dataMapper = dataMapper;
this.sparkSession = sparkSession;
this.mariaDbMapper = mariaDbMapper;
@@ -68,7 +62,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
final PreparedStatement statement = connection.prepareStatement(mariaDbMapper.databaseTablesSelectRawQuery());
statement.setString(1, database.getInternalName());
final ResultSet resultSet1 = statement.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
while (resultSet1.next()) {
final String tableName = resultSet1.getString(1);
if (database.getTables().stream().anyMatch(t -> t.getInternalName().equals(tableName))) {
@@ -106,7 +100,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
} else {
final ResultSet resultSet = connection.prepareStatement(query)
.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
statistic = dataMapper.resultSetToTableStatistic(resultSet);
final TableDto tmpTable = schemaService.inspectTable(table.getDatabase(), table.getInternalName());
statistic.setAvgRowLength(tmpTable.getAvgRowLength());
@@ -147,7 +141,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.tableCreateDtoToCreateTableRawQuery(data))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -176,7 +170,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.dropTableRawQuery(tableName))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -188,37 +182,6 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
log.info("Deleted table with name {}", tableName);
}
- @Override
- public QueryResultDto getPaginatedData(PrivilegedTableDto table, Instant timestamp, Long page, Long size) throws SQLException,
- TableMalformedException {
- final ComboPooledDataSource dataSource = getPrivilegedDataSource(table.getDatabase());
- final Connection connection = dataSource.getConnection();
- final QueryResultDto queryResult;
- try {
- /* find table data */
- long start = System.currentTimeMillis();
- final ResultSet resultSet = connection.prepareStatement(mariaDbMapper.selectDatasetRawQuery(
- table.getDatabase().getInternalName(), table.getInternalName(), table.getColumns(),
- timestamp, size, page))
- .executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
- start = System.currentTimeMillis();
- connection.commit();
- queryResult = dataMapper.resultListToQueryResultDto(table.getColumns(), resultSet);
- log.debug("mapped result in {} ms", System.currentTimeMillis() - start);
- httpDataAccessCounter.increment();
- } catch (SQLException e) {
- connection.rollback();
- log.error("Failed to find data from table {}.{}: {}", table.getDatabase().getInternalName(), table.getInternalName(), e.getMessage());
- throw new TableMalformedException("Failed to find data from table " + table.getDatabase().getInternalName() + "." + table.getInternalName() + ": " + e.getMessage(), e);
- } finally {
- dataSource.close();
- }
- log.info("Find data from table {}.{}", table.getDatabase().getInternalName(), table.getInternalName());
- queryResult.setId(table.getId());
- return queryResult;
- }
-
@Override
public List<TableHistoryDto> history(PrivilegedTableDto table, Long size) throws SQLException,
TableNotFoundException {
@@ -231,7 +194,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
final ResultSet resultSet = connection.prepareStatement(mariaDbMapper.selectHistoryRawQuery(
table.getDatabase().getInternalName(), table.getInternalName(), size))
.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
history = dataMapper.resultSetToTableHistory(resultSet);
connection.commit();
} catch (SQLException e) {
@@ -257,7 +220,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
final ResultSet resultSet = connection.prepareStatement(mariaDbMapper.selectCountRawQuery(
table.getDatabase().getInternalName(), table.getInternalName(), timestamp))
.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
queryResult = mariaDbMapper.resultSetToNumber(resultSet);
connection.commit();
} catch (SQLException e) {
@@ -338,7 +301,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
}
final long start = System.currentTimeMillis();
statement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -382,7 +345,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
}
final long start = System.currentTimeMillis();
statement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -418,7 +381,7 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
}
final long start = System.currentTimeMillis();
statement.executeUpdate();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -442,34 +405,24 @@ public class TableServiceMariaDbImpl extends HibernateConnector implements Table
}
@Override
- public ExportResourceDto exportDataset(PrivilegedTableDto table, Instant timestamp) throws TableNotFoundException,
- QueryMalformedException, StorageUnavailableException, MalformedException {
- final Dataset<Row> dataset = getData(table, timestamp);
- httpDataAccessCounter.increment();
- return storageService.transformDataset(dataset);
- }
-
- @Override
- public Dataset<Row> getData(@NotNull PrivilegedTableDto table, Instant timestamp) throws TableNotFoundException,
- QueryMalformedException {
+ public Dataset<Row> getData(PrivilegedDatabaseDto database, String tableOrView, Instant timestamp,
+ Long page, Long size, SortTypeDto sortDirection, String sortColumn)
+ throws QueryMalformedException, TableNotFoundException {
try {
final Properties properties = new Properties();
- properties.setProperty("user", table.getDatabase().getContainer().getUsername());
- properties.setProperty("password", table.getDatabase().getContainer().getPassword());
+ properties.setProperty("user", database.getContainer().getUsername());
+ properties.setProperty("password", database.getContainer().getPassword());
return sparkSession.read()
- .jdbc(getSparkUrl(table.getDatabase().getContainer(), table.getDatabase().getInternalName()),
- mariaDbMapper.tableOrViewToRawExportQuery(table.getDatabase().getInternalName(),
- table.getInternalName(), table.getColumns().stream()
- .map(ColumnDto::getInternalName).toList(), timestamp), properties);
+ .jdbc(getSparkUrl(database.getContainer(), database.getInternalName()), tableOrView, properties);
} catch (Exception e) {
if (e instanceof ExtendedAnalysisException exception) {
if (exception.getSimpleMessage().contains("TABLE_OR_VIEW_NOT_FOUND")) {
- log.error("Failed to find table {}: {}", table.getInternalName(), exception.getSimpleMessage());
- throw new TableNotFoundException("Failed to find table " + table.getInternalName() + ": " + exception.getSimpleMessage()) /* remove throwable on purpose, clutters the output */;
+ log.error("Failed to find named reference: {}", exception.getSimpleMessage());
+ throw new TableNotFoundException("Failed to find named reference: " + exception.getSimpleMessage()) /* remove throwable on purpose, clutters the output */;
}
}
- log.error("Failed to export dataset: {}", e.getMessage());
- throw new QueryMalformedException("Failed to export dataset: " + e.getMessage(), e);
+ log.error("Failed to find get data from query statement: {}", e.getMessage());
+ throw new QueryMalformedException("Failed to find get data from query statement: " + e.getMessage(), e);
}
}
diff --git a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/ViewServiceMariaDbImpl.java b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/ViewServiceMariaDbImpl.java
index 7ca776ff8a37987aaf640012d665036f695bf058..a4cb031066c90d11c236eddb142e815779412e48 100644
--- a/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/ViewServiceMariaDbImpl.java
+++ b/dbrepo-data-service/services/src/main/java/at/tuwien/service/impl/ViewServiceMariaDbImpl.java
@@ -1,30 +1,23 @@
package at.tuwien.service.impl;
-import at.tuwien.ExportResourceDto;
-import at.tuwien.api.database.ViewColumnDto;
import at.tuwien.api.database.ViewCreateDto;
import at.tuwien.api.database.ViewDto;
import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
-import at.tuwien.api.database.query.QueryResultDto;
-import at.tuwien.api.database.table.columns.ColumnDto;
+import at.tuwien.api.database.query.QueryDto;
import at.tuwien.config.QueryConfig;
-import at.tuwien.exception.*;
+import at.tuwien.exception.DatabaseMalformedException;
+import at.tuwien.exception.QueryMalformedException;
+import at.tuwien.exception.ViewMalformedException;
+import at.tuwien.exception.ViewNotFoundException;
import at.tuwien.mapper.DataMapper;
import at.tuwien.mapper.MariaDbMapper;
import at.tuwien.mapper.MetadataMapper;
import at.tuwien.service.SchemaService;
-import at.tuwien.service.StorageService;
import at.tuwien.service.ViewService;
import com.google.common.hash.Hashing;
import com.mchange.v2.c3p0.ComboPooledDataSource;
-import io.micrometer.core.instrument.Counter;
-import jakarta.validation.constraints.NotNull;
import lombok.extern.log4j.Log4j2;
-import org.apache.spark.sql.Dataset;
-import org.apache.spark.sql.Row;
-import org.apache.spark.sql.SparkSession;
-import org.apache.spark.sql.catalyst.ExtendedAnalysisException;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Service;
@@ -36,36 +29,51 @@ import java.sql.SQLException;
import java.time.Instant;
import java.util.LinkedList;
import java.util.List;
-import java.util.Properties;
@Log4j2
@Service
public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewService {
- private final Counter httpDataAccessCounter;
private final DataMapper dataMapper;
private final QueryConfig queryConfig;
- private final SparkSession sparkSession;
- private final MariaDbMapper mariaDbMapper;
private final SchemaService schemaService;
- private final StorageService storageService;
+ private final MariaDbMapper mariaDbMapper;
private final MetadataMapper metadataMapper;
@Autowired
- public ViewServiceMariaDbImpl(Counter httpDataAccessCounter, DataMapper dataMapper,
- QueryConfig queryConfig, SparkSession sparkSession, MariaDbMapper mariaDbMapper,
- SchemaService schemaService, StorageService storageService,
- MetadataMapper metadataMapper) {
- this.httpDataAccessCounter = httpDataAccessCounter;
+ public ViewServiceMariaDbImpl(DataMapper dataMapper, QueryConfig queryConfig, SchemaService schemaService,
+ MariaDbMapper mariaDbMapper, MetadataMapper metadataMapper) {
this.dataMapper = dataMapper;
this.queryConfig = queryConfig;
- this.sparkSession = sparkSession;
- this.mariaDbMapper = mariaDbMapper;
this.schemaService = schemaService;
- this.storageService = storageService;
+ this.mariaDbMapper = mariaDbMapper;
this.metadataMapper = metadataMapper;
}
+ @Override
+ public Boolean existsByName(PrivilegedDatabaseDto database, String name) throws SQLException,
+ QueryMalformedException {
+ final ComboPooledDataSource dataSource = getPrivilegedDataSource(database);
+ final Connection connection = dataSource.getConnection();
+ final Boolean queryResult;
+ try {
+ /* find view data */
+ final long start = System.currentTimeMillis();
+ final PreparedStatement statement = connection.prepareStatement(mariaDbMapper.selectExistsTableOrViewRawQuery());
+ statement.setString(1, database.getInternalName());
+ statement.setString(2, name);
+ final ResultSet resultSet = statement.executeQuery();
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
+ queryResult = mariaDbMapper.resultSetToBoolean(resultSet);
+ } catch (SQLException e) {
+ log.error("Failed to prepare statement {}", e.getMessage());
+ throw new QueryMalformedException("Failed to prepare statement: " + e.getMessage(), e);
+ } finally {
+ dataSource.close();
+ }
+ return queryResult;
+ }
+
@Override
public List<ViewDto> getSchemas(PrivilegedDatabaseDto database) throws SQLException, DatabaseMalformedException,
ViewNotFoundException {
@@ -78,9 +86,13 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
statement.setString(1, database.getInternalName());
final long start = System.currentTimeMillis();
final ResultSet resultSet1 = statement.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
while (resultSet1.next()) {
final String viewName = resultSet1.getString(1);
+ if (viewName.length() == 64) {
+ log.trace("view {}.{} seems to be a subset view (name length = 64), skip.", database.getInternalName(), viewName);
+ continue;
+ }
if (database.getViews().stream().anyMatch(v -> v.getInternalName().equals(viewName))) {
log.trace("view {}.{} already known to metadata database, skip.", database.getInternalName(), viewName);
continue;
@@ -101,6 +113,17 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
return views;
}
+ @Override
+ public ViewDto create(PrivilegedDatabaseDto database, QueryDto subset) throws ViewMalformedException,
+ SQLException {
+ final ViewCreateDto data = ViewCreateDto.builder()
+ .name(metadataMapper.queryDtoToViewName(subset))
+ .query(subset.getQuery())
+ .isPublic(false)
+ .build();
+ return create(database, data);
+ }
+
@Override
public ViewDto create(PrivilegedDatabaseDto database, ViewCreateDto data) throws SQLException,
ViewMalformedException {
@@ -127,7 +150,7 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
final long start = System.currentTimeMillis();
connection.prepareStatement(mariaDbMapper.viewCreateRawQuery(view.getInternalName(), data.getQuery()))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
/* select view columns */
final PreparedStatement statement2 = connection.prepareStatement(mariaDbMapper.databaseTableColumnsSelectRawQuery());
statement2.setString(1, database.getInternalName());
@@ -149,47 +172,15 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
}
@Override
- public QueryResultDto data(PrivilegedViewDto view, Instant timestamp, Long page, Long size) throws SQLException,
- ViewMalformedException {
- final ComboPooledDataSource dataSource = getPrivilegedDataSource(view.getDatabase());
- final Connection connection = dataSource.getConnection();
- final QueryResultDto queryResult;
- try {
- /* find table data */
- final List<ColumnDto> mappedColumns = view.getColumns()
- .stream()
- .map(metadataMapper::viewColumnDtoToColumnDto)
- .toList();
- final long start = System.currentTimeMillis();
- final ResultSet resultSet = connection.prepareStatement(
- mariaDbMapper.selectDatasetRawQuery(view.getDatabase().getInternalName(),
- view.getInternalName(), mappedColumns, timestamp, size, page))
- .executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
- queryResult = dataMapper.resultListToQueryResultDto(mappedColumns, resultSet);
- queryResult.setId(view.getId());
- connection.commit();
- httpDataAccessCounter.increment();
- } catch (SQLException e) {
- log.error("Failed to map object: {}", e.getMessage());
- throw new ViewMalformedException("Failed to map object: " + e.getMessage(), e);
- } finally {
- dataSource.close();
- }
- log.info("Find data from view {}.{}", view.getDatabase().getInternalName(), view.getInternalName());
- return queryResult;
- }
-
- @Override
- public void delete(PrivilegedViewDto view) throws SQLException, ViewMalformedException {
- final ComboPooledDataSource dataSource = getPrivilegedDataSource(view.getDatabase());
+ public void delete(PrivilegedDatabaseDto database, String viewName) throws SQLException, ViewMalformedException {
+ final ComboPooledDataSource dataSource = getPrivilegedDataSource(database);
final Connection connection = dataSource.getConnection();
try {
/* drop view if exists */
final long start = System.currentTimeMillis();
- connection.prepareStatement(mariaDbMapper.dropViewRawQuery(view.getInternalName()))
+ connection.prepareStatement(mariaDbMapper.dropViewRawQuery(viewName))
.execute();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
connection.commit();
} catch (SQLException e) {
connection.rollback();
@@ -198,7 +189,7 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
} finally {
dataSource.close();
}
- log.info("Deleted view {}.{}", view.getDatabase().getInternalName(), view.getInternalName());
+ log.info("Deleted view {}.{}", database.getInternalName(), viewName);
}
@@ -214,7 +205,7 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
final ResultSet resultSet = connection.prepareStatement(mariaDbMapper.selectCountRawQuery(
view.getDatabase().getInternalName(), view.getInternalName(), timestamp))
.executeQuery();
- log.debug("executed statement in {} ms", System.currentTimeMillis() - start);
+ log.trace("executed statement in {} ms", System.currentTimeMillis() - start);
queryResult = mariaDbMapper.resultSetToNumber(resultSet);
connection.commit();
} catch (SQLException e) {
@@ -228,36 +219,4 @@ public class ViewServiceMariaDbImpl extends HibernateConnector implements ViewSe
return queryResult;
}
- @Override
- public ExportResourceDto exportDataset(PrivilegedViewDto view) throws QueryMalformedException,
- StorageUnavailableException, ViewNotFoundException, MalformedException {
- final Dataset<Row> dataset = getData(view);
- httpDataAccessCounter.increment();
- return storageService.transformDataset(dataset);
- }
-
- @Override
- public Dataset<Row> getData(@NotNull PrivilegedViewDto view) throws ViewNotFoundException,
- QueryMalformedException {
- try {
- final Properties properties = new Properties();
- properties.setProperty("user", view.getDatabase().getContainer().getUsername());
- properties.setProperty("password", view.getDatabase().getContainer().getPassword());
- return sparkSession.read()
- .jdbc(getSparkUrl(view.getDatabase().getContainer(), view.getDatabase().getInternalName()),
- mariaDbMapper.tableOrViewToRawExportQuery(view.getDatabase().getInternalName(),
- view.getInternalName(), view.getColumns().stream()
- .map(ViewColumnDto::getInternalName).toList(), Instant.now()), properties);
- } catch (Exception e) {
- if (e instanceof ExtendedAnalysisException exception) {
- if (exception.getSimpleMessage().contains("TABLE_OR_VIEW_NOT_FOUND")) {
- log.error("Failed to find view {}: {}", view.getInternalName(), exception.getSimpleMessage());
- throw new ViewNotFoundException("Failed to find view " + view.getInternalName() + ": " + exception.getSimpleMessage()) /* remove throwable on purpose, clutters the output */;
- }
- }
- log.error("Failed to export dataset: {}", e.getMessage());
- throw new QueryMalformedException("Failed to export dataset: " + e.getMessage(), e);
- }
- }
-
}
diff --git a/dbrepo-metadata-service/api/pom.xml b/dbrepo-metadata-service/api/pom.xml
index 9196e2d228a12234adee7a5cbf0eb9a51da8adf6..42dec6711548912643643c870cbb45733b26086b 100644
--- a/dbrepo-metadata-service/api/pom.xml
+++ b/dbrepo-metadata-service/api/pom.xml
@@ -6,18 +6,18 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-api</artifactId>
<name>dbrepo-metadata-service-api</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service-entities</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<scope>compile</scope>
</dependency>
</dependencies>
diff --git a/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/ViewCreateDto.java b/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/ViewCreateDto.java
index 583b5f0d81aab8f8af7ca71efcd743ac8a079b27..4041292b51a34a65183d05391cbad0c52f0b38e8 100644
--- a/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/ViewCreateDto.java
+++ b/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/ViewCreateDto.java
@@ -19,7 +19,7 @@ import lombok.extern.jackson.Jacksonized;
public class ViewCreateDto {
@NotBlank
- @Size(min = 1, max = 64)
+ @Size(min = 1, max = 63)
@Schema(example = "Air Quality")
private String name;
diff --git a/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/query/QueryResultDto.java b/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/query/QueryResultDto.java
deleted file mode 100644
index 90f2d1a6ce9a8a7127d3ea754d6542ed8ef88c88..0000000000000000000000000000000000000000
--- a/dbrepo-metadata-service/api/src/main/java/at/tuwien/api/database/query/QueryResultDto.java
+++ /dev/null
@@ -1,29 +0,0 @@
-package at.tuwien.api.database.query;
-
-import lombok.*;
-
-import jakarta.validation.constraints.NotNull;
-import lombok.extern.jackson.Jacksonized;
-
-import java.util.List;
-import java.util.Map;
-
-@Getter
-@Setter
-@Builder
-@NoArgsConstructor
-@AllArgsConstructor
-@Jacksonized
-@ToString
-public class QueryResultDto {
-
- @NotNull
- private List<Map<String, Object>> result;
-
- @NotNull
- private List<Map<String, Integer>> headers;
-
- @NotNull
- private Long id;
-
-}
diff --git a/dbrepo-metadata-service/entities/pom.xml b/dbrepo-metadata-service/entities/pom.xml
index c308f0163b8da4f65b01efcfbedce90d7a0fb9c1..f7f575f633895caf1f4bda5909201aa85929bbd9 100644
--- a/dbrepo-metadata-service/entities/pom.xml
+++ b/dbrepo-metadata-service/entities/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-entities</artifactId>
<name>dbrepo-metadata-service-entity</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies/>
diff --git a/dbrepo-metadata-service/oai/pom.xml b/dbrepo-metadata-service/oai/pom.xml
index fddf87ecb4127be0539b63697cba01d0ffa59d61..d08e19730e41123974e19ad7dfaaed6597953b87 100644
--- a/dbrepo-metadata-service/oai/pom.xml
+++ b/dbrepo-metadata-service/oai/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-oai</artifactId>
<name>dbrepo-metadata-service-oai</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies/>
diff --git a/dbrepo-metadata-service/pom.xml b/dbrepo-metadata-service/pom.xml
index 56ab43349a657baf2cdc5b8bd84f7d1fc19e72f2..025be479bb5244d470259fd2963ad4a63c4f155b 100644
--- a/dbrepo-metadata-service/pom.xml
+++ b/dbrepo-metadata-service/pom.xml
@@ -5,13 +5,13 @@
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
- <version>3.1.12</version>
+ <version>3.3.5</version>
</parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
<name>dbrepo-metadata-service</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<description>Service that manages the metadata</description>
@@ -38,11 +38,11 @@
<properties>
<java.version>17</java.version>
- <spring-cloud.version>4.0.2</spring-cloud.version>
+ <spring-cloud.version>4.1.4</spring-cloud.version>
<mapstruct.version>1.5.5.Final</mapstruct.version>
<rabbitmq.version>5.20.0</rabbitmq.version>
<jackson-datatype.version>2.15.0</jackson-datatype.version>
- <commons-io.version>2.15.0</commons-io.version>
+ <commons-io.version>2.17.0</commons-io.version>
<commons-validator.version>1.8.0</commons-validator.version>
<guava.version>33.0.0-jre</guava.version>
<jacoco.version>0.8.12</jacoco.version>
@@ -55,6 +55,7 @@
<keycloak.version>21.0.2</keycloak.version>
<springdoc-openapi.version>2.3.0</springdoc-openapi.version>
<testcontainers.version>1.19.1</testcontainers.version>
+ <jackson.version>2.15.2</jackson.version>
<keycloak-testcontainer.version>3.2.0</keycloak-testcontainer.version>
<aws-s3.version>2.25.23</aws-s3.version>
<jackson.version>2.15.2</jackson.version>
diff --git a/dbrepo-metadata-service/report/pom.xml b/dbrepo-metadata-service/report/pom.xml
index 95ea8b8b975a11e5851dbde6e60de8e01a8f20f5..f49b7a292a92b5e840df5bbd1b9a0ecdf0287a33 100644
--- a/dbrepo-metadata-service/report/pom.xml
+++ b/dbrepo-metadata-service/report/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-report</artifactId>
<name>dbrepo-metadata-service-report</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/repositories/pom.xml b/dbrepo-metadata-service/repositories/pom.xml
index 816f71a1cb2390a56ecf35eb3682ed29e34d0372..a6d7bcc2819ad65086b356bb17e2b1523242b011 100644
--- a/dbrepo-metadata-service/repositories/pom.xml
+++ b/dbrepo-metadata-service/repositories/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-repositories</artifactId>
<name>dbrepo-metadata-service-repositories</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/rest-service/pom.xml b/dbrepo-metadata-service/rest-service/pom.xml
index 613d4c4d4a6bd2db151b037fc8933013a370e9bd..0be7176e7a50681f12a906b68ff250684b8704a6 100644
--- a/dbrepo-metadata-service/rest-service/pom.xml
+++ b/dbrepo-metadata-service/rest-service/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-rest-service</artifactId>
<name>dbrepo-metadata-service-rest</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/rest-service/src/main/resources/application.yml b/dbrepo-metadata-service/rest-service/src/main/resources/application.yml
index 2d79e7cfae29b68515a6f008fd1aaae2c53f0461..290864eea961100236eea2764297d01251c1ccbc 100644
--- a/dbrepo-metadata-service/rest-service/src/main/resources/application.yml
+++ b/dbrepo-metadata-service/rest-service/src/main/resources/application.yml
@@ -48,21 +48,6 @@ logging:
at.tuwien.: "${LOG_LEVEL:info}"
org.springframework.web.servlet.mvc.method.annotation.ExceptionHandlerExceptionResolver: debug
dbrepo:
- repository-name: "${REPOSITORY_NAME:Database Repository}"
- base-url: "${BASE_URL:http://localhost}"
- admin-email: "${ADMIN_EMAIL:noreply@example.com}"
- deleted-record: "${DELETED_RECORD:persistent}"
- granularity: "${GRANULARITY:YYYY-MM-DDThh:mm:ssZ}"
- exchangeName: "${BROKER_EXCHANGE_NAME:dbrepo}"
- queueName: "${BROKER_QUEUE_NAME:dbrepo}"
- connectionTimeout: "${SPARQL_CONNECTION_TIMEOUT:10000}"
- s3:
- accessKeyId: "${S3_ACCESS_KEY_ID:seaweedfsadmin}"
- secretAccessKey: "${S3_SECRET_ACCESS_KEY:seaweedfsadmin}"
- bucket: "${S3_BUCKET:dbrepo}"
- system:
- username: "${SYSTEM_USERNAME:admin}"
- password: "${SYSTEM_PASSWORD:admin}"
endpoints:
analyseService: "${ANALYSE_SERVICE_ENDPOINT:http://analyse-service:8080}"
searchService: "${SEARCH_SERVICE_ENDPOINT:http://search-service:8080}"
@@ -72,6 +57,13 @@ dbrepo:
storageService: "${S3_ENDPOINT:http://storage-service:9000}"
rorService: "${ROR_ENDPOINT:https://api.ror.org}"
crossRefService: "${CROSSREF_ENDPOINT:http://data.crossref.org}"
+ s3:
+ accessKeyId: "${S3_ACCESS_KEY_ID:seaweedfsadmin}"
+ secretAccessKey: "${S3_SECRET_ACCESS_KEY:seaweedfsadmin}"
+ bucket: "${S3_BUCKET:dbrepo}"
+ system:
+ username: "${SYSTEM_USERNAME:admin}"
+ password: "${SYSTEM_PASSWORD:admin}"
pid:
base: "${BASE_URL:http://localhost}/pid/"
jwt:
@@ -82,3 +74,11 @@ dbrepo:
client: "${AUTH_SERVICE_CLIENT:dbrepo-client}"
clientSecret: "${AUTH_SERVICE_CLIENT_SECRET:MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}"
website: "${BASE_URL:http://localhost}"
+ repository-name: "${REPOSITORY_NAME:Database Repository}"
+ base-url: "${BASE_URL:http://localhost}"
+ admin-email: "${ADMIN_EMAIL:noreply@example.com}"
+ deleted-record: "${DELETED_RECORD:persistent}"
+ granularity: "${GRANULARITY:YYYY-MM-DDThh:mm:ssZ}"
+ exchangeName: "${BROKER_EXCHANGE_NAME:dbrepo}"
+ queueName: "${BROKER_QUEUE_NAME:dbrepo}"
+ connectionTimeout: "${SPARQL_CONNECTION_TIMEOUT:10000}"
diff --git a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mapper/MetadataMapperUnitTest.java b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mapper/MetadataMapperUnitTest.java
index c84990098596b159be2aa65459638ba0b498c7ee..108801e53f24c25c9f783dbfa9f9a3ea0fde5107 100644
--- a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mapper/MetadataMapperUnitTest.java
+++ b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mapper/MetadataMapperUnitTest.java
@@ -217,7 +217,7 @@ public class MetadataMapperUnitTest extends AbstractUnitTest {
final TableDto table0 = response.getTables().get(0);
assertEquals(TABLE_1_ID, table0.getId());
assertEquals(TABLE_1_NAME, table0.getName());
- assertEquals(TABLE_1_INTERNALNAME, table0.getInternalName());
+ assertEquals(TABLE_1_INTERNAL_NAME, table0.getInternalName());
assertEquals(TABLE_1_DESCRIPTION, table0.getDescription());
assertEquals(DATABASE_1_ID, table0.getTdbid());
assertEquals(USER_1_ID, table0.getCreatedBy());
diff --git a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mvc/AuthenticationPrivilegedIntegrationMvcTest.java b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mvc/AuthenticationPrivilegedIntegrationMvcTest.java
index 6a01ae6fec9e06d679fc848af0b697fcfbeba3df..22e921f53466d2f6f12aa775cde4af20c9a67be9 100644
--- a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mvc/AuthenticationPrivilegedIntegrationMvcTest.java
+++ b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/mvc/AuthenticationPrivilegedIntegrationMvcTest.java
@@ -166,7 +166,7 @@ public class AuthenticationPrivilegedIntegrationMvcTest extends AbstractUnitTest
.andExpect(header().string("X-Port", "" + CONTAINER_1_PORT))
.andExpect(header().string("X-Type", IMAGE_1_JDBC))
.andExpect(header().string("X-Database", DATABASE_1_INTERNALNAME))
- .andExpect(header().string("X-Table", TABLE_1_INTERNALNAME))
+ .andExpect(header().string("X-Table", TABLE_1_INTERNAL_NAME))
.andExpect(header().string("Access-Control-Expose-Headers", "X-Username X-Password X-Host X-Port X-Type X-Database X-Table"))
.andExpect(status().isOk());
}
@@ -184,7 +184,7 @@ public class AuthenticationPrivilegedIntegrationMvcTest extends AbstractUnitTest
.andExpect(header().string("X-Port", "" + CONTAINER_1_PORT))
.andExpect(header().string("X-Type", IMAGE_1_JDBC))
.andExpect(header().string("X-Database", DATABASE_1_INTERNALNAME))
- .andExpect(header().string("X-Table", TABLE_1_INTERNALNAME))
+ .andExpect(header().string("X-Table", TABLE_1_INTERNAL_NAME))
.andExpect(header().string("Access-Control-Expose-Headers", "X-Username X-Password X-Host X-Port X-Type X-Database X-Table"))
.andExpect(status().isOk());
}
diff --git a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/service/TableServiceUnitTest.java b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/service/TableServiceUnitTest.java
index 551a6c350a95e1c9a22fb55d72e04530386cb522..01fc883bc8668b8c163527913b23d1206af302a6 100644
--- a/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/service/TableServiceUnitTest.java
+++ b/dbrepo-metadata-service/rest-service/src/test/java/at/tuwien/service/TableServiceUnitTest.java
@@ -107,7 +107,7 @@ public class TableServiceUnitTest extends AbstractUnitTest {
/* test */
assertThrows(DatabaseNotFoundException.class, () -> {
- tableService.findByName(DATABASE_3_ID, TABLE_1_INTERNALNAME);
+ tableService.findByName(DATABASE_3_ID, TABLE_1_INTERNAL_NAME);
});
}
diff --git a/dbrepo-metadata-service/services/pom.xml b/dbrepo-metadata-service/services/pom.xml
index d98e575eb94e6893b67125b2898fcca4a097a151..de48899cbe6955abdca5e830048ff51099d88878 100644
--- a/dbrepo-metadata-service/services/pom.xml
+++ b/dbrepo-metadata-service/services/pom.xml
@@ -6,12 +6,12 @@
<parent>
<artifactId>dbrepo-metadata-service</artifactId>
<groupId>at.tuwien</groupId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-services</artifactId>
<name>dbrepo-metadata-service-services</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/test/pom.xml b/dbrepo-metadata-service/test/pom.xml
index dcccbef8f8083ac032d5f4c14618e3661e4efb86..49cff9ddcb8c8c301d9f0e87adcb16dc61fbcab0 100644
--- a/dbrepo-metadata-service/test/pom.xml
+++ b/dbrepo-metadata-service/test/pom.xml
@@ -6,12 +6,12 @@
<parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-metadata-service</artifactId>
- <version>1.5.2</version>
+ <version>1.5.3</version>
</parent>
<artifactId>dbrepo-metadata-service-test</artifactId>
<name>dbrepo-metadata-service-test</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<dependencies>
<dependency>
diff --git a/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/AbstractUnitTest.java b/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/AbstractUnitTest.java
index 8e613cfa7cad69c2de42d96ccacee6957e5f7939..b674e7252a5d3422ad7512e57c90a6c26b6e5b2d 100644
--- a/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/AbstractUnitTest.java
+++ b/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/AbstractUnitTest.java
@@ -122,6 +122,7 @@ public abstract class AbstractUnitTest extends BaseTest {
TABLE_8_PRIVILEGED_DTO.setDatabase(DATABASE_3_PRIVILEGED_DTO);
VIEW_5.setDatabase(DATABASE_3);
VIEW_5.setColumns(VIEW_5_COLUMNS);
+ VIEW_5_DTO.setColumns(VIEW_5_COLUMNS_DTO);
IDENTIFIER_6.setDatabase(DATABASE_3);
/* DATABASE 4 */
DATABASE_4.setSubsets(new LinkedList<>());
diff --git a/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/BaseTest.java b/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/BaseTest.java
index 4586f68d4f9c2d809bb568c0c5e878e86ca345d8..f685e5fcb929c6bfe3f8bc76b1fa51042d911eb6 100644
--- a/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/BaseTest.java
+++ b/dbrepo-metadata-service/test/src/main/java/at/tuwien/test/BaseTest.java
@@ -20,7 +20,6 @@ import at.tuwien.api.database.internal.PrivilegedDatabaseDto;
import at.tuwien.api.database.internal.PrivilegedViewDto;
import at.tuwien.api.database.query.QueryBriefDto;
import at.tuwien.api.database.query.QueryDto;
-import at.tuwien.api.database.query.QueryResultDto;
import at.tuwien.api.database.table.TableBriefDto;
import at.tuwien.api.database.table.TableCreateDto;
import at.tuwien.api.database.table.TableDto;
@@ -1417,11 +1416,11 @@ public abstract class BaseTest {
public final static Long TABLE_1_ID = 1L;
public final static String TABLE_1_NAME = "Weather AUS";
- public final static String TABLE_1_INTERNALNAME = "weather_aus";
+ public final static String TABLE_1_INTERNAL_NAME = "weather_aus";
public final static Boolean TABLE_1_VERSIONED = true;
public final static Boolean TABLE_1_PROCESSED_CONSTRAINTS = true;
public final static String TABLE_1_DESCRIPTION = "Weather in Australia";
- public final static String TABLE_1_QUEUE_NAME = TABLE_1_INTERNALNAME;
+ public final static String TABLE_1_QUEUE_NAME = TABLE_1_INTERNAL_NAME;
public final static String TABLE_1_ROUTING_KEY = "dbrepo\\." + DATABASE_1_ID + "\\." + TABLE_1_ID;
public final static Long TABLE_1_DATABASE_ID = DATABASE_1_ID;
public final static Long TABLE_1_AVG_ROW_LENGTH = 3L;
@@ -1436,7 +1435,7 @@ public abstract class BaseTest {
.tdbid(DATABASE_1_ID)
.database(null) /* DATABASE_1_PRIVILEGED_DTO */
.created(TABLE_1_CREATED)
- .internalName(TABLE_1_INTERNALNAME)
+ .internalName(TABLE_1_INTERNAL_NAME)
.isVersioned(TABLE_1_VERSIONED)
.description(TABLE_1_DESCRIPTION)
.name(TABLE_1_NAME)
@@ -1459,7 +1458,7 @@ public abstract class BaseTest {
.tdbid(DATABASE_1_ID)
.database(null /* DATABASE_1 */)
.created(TABLE_1_CREATED)
- .internalName(TABLE_1_INTERNALNAME)
+ .internalName(TABLE_1_INTERNAL_NAME)
.isVersioned(TABLE_1_VERSIONED)
.description(TABLE_1_DESCRIPTION)
.name(TABLE_1_NAME)
@@ -1482,7 +1481,7 @@ public abstract class BaseTest {
.id(TABLE_1_ID)
.tdbid(DATABASE_1_ID)
.created(TABLE_1_CREATED)
- .internalName(TABLE_1_INTERNALNAME)
+ .internalName(TABLE_1_INTERNAL_NAME)
.isVersioned(TABLE_1_VERSIONED)
.description(TABLE_1_DESCRIPTION)
.name(TABLE_1_NAME)
@@ -1574,7 +1573,7 @@ public abstract class BaseTest {
public final static TableBriefDto TABLE_1_BRIEF_DTO = TableBriefDto.builder()
.id(TABLE_1_ID)
- .internalName(TABLE_1_INTERNALNAME)
+ .internalName(TABLE_1_INTERNAL_NAME)
.isVersioned(TABLE_1_VERSIONED)
.description(TABLE_1_DESCRIPTION)
.name(TABLE_1_NAME)
@@ -1582,38 +1581,29 @@ public abstract class BaseTest {
.build();
public final static Long TABLE_1_DATA_COUNT = 3L;
- public final static QueryResultDto TABLE_1_DATA_DTO = QueryResultDto.builder()
- .headers(new LinkedList<>(List.of(new HashMap<>() {{
- put("id", 0);
- put("date", 1);
- put("location", 2);
- put("mintemp", 3);
- put("rainfall", 4);
- }})))
- .result(new LinkedList<>(List.of(
- new HashMap<>() {{
- put("id", BigInteger.valueOf(1L));
- put("date", LocalDate.of(2008, 12, 1).atStartOfDay().toInstant(ZoneOffset.UTC));
- put("location", "Albury");
- put("mintemp", 13.4);
- put("rainfall", 0.6);
- }},
- new HashMap<>() {{
- put("id", BigInteger.valueOf(2L));
- put("date", LocalDate.of(2008, 12, 2).atStartOfDay().toInstant(ZoneOffset.UTC));
- put("location", "Albury");
- put("mintemp", 7.4);
- put("rainfall", 0);
- }},
- new HashMap<>() {{
- put("id", BigInteger.valueOf(3L));
- put("date", LocalDate.of(2008, 12, 3).atStartOfDay().toInstant(ZoneOffset.UTC));
- put("location", "Albury");
- put("mintemp", 12.9);
- put("rainfall", 0);
- }}
- )))
- .build();
+ public final static List<Map<String, Object>> TABLE_1_DATA_DTO = new LinkedList<>(List.of(
+ new HashMap<>() {{
+ put("id", BigInteger.valueOf(1L));
+ put("date", LocalDate.of(2008, 12, 1).atStartOfDay().toInstant(ZoneOffset.UTC));
+ put("location", "Albury");
+ put("mintemp", 13.4);
+ put("rainfall", 0.6);
+ }},
+ new HashMap<>() {{
+ put("id", BigInteger.valueOf(2L));
+ put("date", LocalDate.of(2008, 12, 2).atStartOfDay().toInstant(ZoneOffset.UTC));
+ put("location", "Albury");
+ put("mintemp", 7.4);
+ put("rainfall", 0);
+ }},
+ new HashMap<>() {{
+ put("id", BigInteger.valueOf(3L));
+ put("date", LocalDate.of(2008, 12, 3).atStartOfDay().toInstant(ZoneOffset.UTC));
+ put("location", "Albury");
+ put("mintemp", 12.9);
+ put("rainfall", 0);
+ }}
+ ));
public final static Long TABLE_2_ID = 2L;
public final static String TABLE_2_NAME = "Weather Location";
@@ -2432,44 +2422,38 @@ public abstract class BaseTest {
.build());
public final static Long TABLE_8_DATA_COUNT = 6L;
- public final static QueryResultDto TABLE_8_DATA_DTO = QueryResultDto.builder()
- .headers(new LinkedList<>(List.of(new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, 0);
- put(COLUMN_8_2_INTERNAL_NAME, 1);
- }})))
- .result(new LinkedList<>(List.of(
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(1L));
- put(COLUMN_8_2_INTERNAL_NAME, 11.2);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }},
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(2L));
- put(COLUMN_8_2_INTERNAL_NAME, 11.3);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }},
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(3L));
- put(COLUMN_8_2_INTERNAL_NAME, 11.4);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }},
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(4L));
- put(COLUMN_8_2_INTERNAL_NAME, 11.9);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }},
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(5L));
- put(COLUMN_8_2_INTERNAL_NAME, 12.3);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }},
- new HashMap<>() {{
- put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(6L));
- put(COLUMN_8_2_INTERNAL_NAME, 23.1);
- put(COLUMN_8_3_INTERNAL_NAME, null);
- }}
- )))
- .build();
+ public final static List<Map<String, Object>> TABLE_8_DATA_DTO = new LinkedList<>(List.of(
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(1L));
+ put(COLUMN_8_2_INTERNAL_NAME, 11.2);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }},
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(2L));
+ put(COLUMN_8_2_INTERNAL_NAME, 11.3);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }},
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(3L));
+ put(COLUMN_8_2_INTERNAL_NAME, 11.4);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }},
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(4L));
+ put(COLUMN_8_2_INTERNAL_NAME, 11.9);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }},
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(5L));
+ put(COLUMN_8_2_INTERNAL_NAME, 12.3);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }},
+ new HashMap<>() {{
+ put(COLUMN_8_1_INTERNAL_NAME, BigInteger.valueOf(6L));
+ put(COLUMN_8_2_INTERNAL_NAME, 23.1);
+ put(COLUMN_8_3_INTERNAL_NAME, null);
+ }}
+ ));
public final static TableStatisticDto TABLE_8_STATISTIC_DTO = TableStatisticDto.builder()
.columns(new HashMap<>() {{
@@ -2637,11 +2621,6 @@ public abstract class BaseTest {
put("value", 23.1);
}});
- public final static QueryResultDto QUERY_4_RESULT_DTO = QueryResultDto.builder()
- .id(QUERY_4_RESULT_ID)
- .result(QUERY_4_RESULT_RESULT)
- .build();
-
public final static QueryDto QUERY_4_DTO = QueryDto.builder()
.id(QUERY_4_ID)
.databaseId(QUERY_4_DATABASE_ID)
@@ -2687,20 +2666,14 @@ public abstract class BaseTest {
.createdBy(QUERY_5_CREATED_BY)
.build();
- public final static QueryResultDto QUERY_5_RESULT_DTO = QueryResultDto.builder()
- .headers(new LinkedList<>(List.of(new HashMap<>() {{
- put("id", 0);
- put("value", 1);
- }})))
- .result(new LinkedList<>(List.of(
- Map.of("id", BigInteger.valueOf(1L), "value", 11.2),
- Map.of("id", BigInteger.valueOf(2L), "value", 11.3),
- Map.of("id", BigInteger.valueOf(3L), "value", 11.4),
- Map.of("id", BigInteger.valueOf(4L), "value", 11.9),
- Map.of("id", BigInteger.valueOf(5L), "value", 12.3),
- Map.of("id", BigInteger.valueOf(6L), "value", 23.1)
- )))
- .build();
+ public final static List<Map<String, Object>> QUERY_5_RESULT_DTO = new LinkedList<>(List.of(
+ Map.of("id", BigInteger.valueOf(1L), "value", 11.2),
+ Map.of("id", BigInteger.valueOf(2L), "value", 11.3),
+ Map.of("id", BigInteger.valueOf(3L), "value", 11.4),
+ Map.of("id", BigInteger.valueOf(4L), "value", 11.9),
+ Map.of("id", BigInteger.valueOf(5L), "value", 12.3),
+ Map.of("id", BigInteger.valueOf(6L), "value", 23.1)
+ ));
public final static Long QUERY_6_ID = 6L;
public final static String QUERY_6_STATEMENT = "SELECT `location` FROM `weather_aus` WHERE `id` = 1";
@@ -4721,30 +4694,23 @@ public abstract class BaseTest {
.build();
public final static Long VIEW_1_DATA_COUNT = 3L;
- public final static QueryResultDto VIEW_1_DATA_DTO = QueryResultDto.builder()
- .headers(new LinkedList<>(List.of(new HashMap<>() {{
- put("location", 0);
- put("lat", 1);
- put("lng", 2);
- }})))
- .result(new LinkedList<>(List.of(
- new HashMap<>() {{
- put("location", "Albury");
- put("lat", -36.0653583);
- put("lng", 146.9112214);
- }},
- new HashMap<>() {{
- put("location", "Sydney");
- put("lat", -33.847927);
- put("lng", 150.6517942);
- }},
- new HashMap<>() {{
- put("location", "Vienna");
- put("lat", null);
- put("lng", null);
- }}
- )))
- .build();
+ public final static List<Map<String, Object>> VIEW_1_DATA_DTO = new LinkedList<>(List.of(
+ new HashMap<>() {{
+ put("location", "Albury");
+ put("lat", -36.0653583);
+ put("lng", 146.9112214);
+ }},
+ new HashMap<>() {{
+ put("location", "Sydney");
+ put("lat", -33.847927);
+ put("lng", 150.6517942);
+ }},
+ new HashMap<>() {{
+ put("location", "Vienna");
+ put("lat", null);
+ put("lng", null);
+ }}
+ ));
public final static List<ViewColumn> VIEW_1_COLUMNS = List.of(
ViewColumn.builder()
@@ -5490,7 +5456,7 @@ public abstract class BaseTest {
.query(VIEW_5_QUERY)
.queryHash(VIEW_5_QUERY_HASH)
.createdBy(USER_1_ID)
- .columns(null)
+ .columns(new LinkedList<>())
.build();
public final static List<ViewColumn> VIEW_5_COLUMNS = List.of(
@@ -5530,6 +5496,40 @@ public abstract class BaseTest {
.view(VIEW_5)
.build());
+ public final static List<ViewColumnDto> VIEW_5_COLUMNS_DTO = List.of(
+ ViewColumnDto.builder()
+ .id(29L)
+ .ordinalPosition(0)
+ .name("location")
+ .internalName("location")
+ .ordinalPosition(0)
+ .columnType(ColumnTypeDto.VARCHAR)
+ .size(255L)
+ .isNullAllowed(false)
+ .build(),
+ ViewColumnDto.builder()
+ .id(30L)
+ .ordinalPosition(1)
+ .name("lat")
+ .internalName("lat")
+ .ordinalPosition(1)
+ .columnType(ColumnTypeDto.DECIMAL)
+ .size(10L)
+ .d(0L)
+ .isNullAllowed(true)
+ .build(),
+ ViewColumnDto.builder()
+ .id(31L)
+ .ordinalPosition(2)
+ .name("lng")
+ .internalName("lng")
+ .ordinalPosition(2)
+ .columnType(ColumnTypeDto.DECIMAL)
+ .size(10L)
+ .d(0L)
+ .isNullAllowed(true)
+ .build());
+
public final static Long QUERY_1_RESULT_ID = 1L;
public final static List<Map<String, Object>> QUERY_1_RESULT_RESULT = List.of(
new HashMap<>() {{
@@ -5542,11 +5542,6 @@ public abstract class BaseTest {
put("lng", 150.6517942);
}});
- public final static QueryResultDto QUERY_1_RESULT_DTO = QueryResultDto.builder()
- .id(QUERY_1_RESULT_ID)
- .result(QUERY_1_RESULT_RESULT)
- .build();
-
public final static String LICENSE_1_IDENTIFIER = "MIT";
public final static String LICENSE_1_URI = "https://opensource.org/license/mit/";
diff --git a/dbrepo-search-service/Pipfile b/dbrepo-search-service/Pipfile
index e081ac7bb356a4097aab28b71e44ac86d03e01e0..da6b40dab3378995f966d33c3e97c033e3c5a7a4 100644
--- a/dbrepo-search-service/Pipfile
+++ b/dbrepo-search-service/Pipfile
@@ -18,7 +18,7 @@ jwt = "~=1.3"
testcontainers-opensearch = "*"
pytest = "*"
rdflib = "*"
-dbrepo = {path = "./lib/dbrepo-1.5.2.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.5.3.tar.gz"}
gunicorn = "*"
[dev-packages]
diff --git a/dbrepo-search-service/Pipfile.lock b/dbrepo-search-service/Pipfile.lock
index 9ccdcd7ec5ff19ad05b520e1a9665847497e0dc7..06ddaceeac0ca61d3fef64dad1ec5f17cfe00e02 100644
--- a/dbrepo-search-service/Pipfile.lock
+++ b/dbrepo-search-service/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "5f8f989adc3210e3d07474d3a6c1d5a8bc7352195b75ef07feaf135d9388c60c"
+ "sha256": "40b8d9185eb1297e855ab83a2b899ac611b661afbdf4dfb5c1fc97ca1bb61f23"
},
"pipfile-spec": 6,
"requires": {
@@ -26,85 +26,85 @@
},
"aiohttp": {
"hashes": [
- "sha256:0411777249f25d11bd2964a230b3ffafcbed6cd65d0f2b132bc2b8f5b8c347c7",
- "sha256:0a97d657f6cf8782a830bb476c13f7d777cfcab8428ac49dde15c22babceb361",
- "sha256:0b5a5009b0159a8f707879dc102b139466d8ec6db05103ec1520394fdd8ea02c",
- "sha256:0bcb7f6976dc0b6b56efde13294862adf68dd48854111b422a336fa729a82ea6",
- "sha256:14624d96f0d69cf451deed3173079a68c322279be6030208b045ab77e1e8d550",
- "sha256:15c4e489942d987d5dac0ba39e5772dcbed4cc9ae3710d1025d5ba95e4a5349c",
- "sha256:176f8bb8931da0613bb0ed16326d01330066bb1e172dd97e1e02b1c27383277b",
- "sha256:17af09d963fa1acd7e4c280e9354aeafd9e3d47eaa4a6bfbd2171ad7da49f0c5",
- "sha256:1a8b13b9950d8b2f8f58b6e5842c4b842b5887e2c32e3f4644d6642f1659a530",
- "sha256:202f40fb686e5f93908eee0c75d1e6fbe50a43e9bd4909bf3bf4a56b560ca180",
- "sha256:21cbe97839b009826a61b143d3ca4964c8590d7aed33d6118125e5b71691ca46",
- "sha256:27935716f8d62c1c73010428db310fd10136002cfc6d52b0ba7bdfa752d26066",
- "sha256:282e0a7ddd36ebc411f156aeaa0491e8fe7f030e2a95da532cf0c84b0b70bc66",
- "sha256:28f29bce89c3b401a53d6fd4bee401ee943083bf2bdc12ef297c1d63155070b0",
- "sha256:2ac9fd83096df36728da8e2f4488ac3b5602238f602706606f3702f07a13a409",
- "sha256:30f9f89ae625d412043f12ca3771b2ccec227cc93b93bb1f994db6e1af40a7d3",
- "sha256:317251b9c9a2f1a9ff9cd093775b34c6861d1d7df9439ce3d32a88c275c995cd",
- "sha256:31de2f10f63f96cc19e04bd2df9549559beadd0b2ee2da24a17e7ed877ca8c60",
- "sha256:36df00e0541f264ce42d62280281541a47474dfda500bc5b7f24f70a7f87be7a",
- "sha256:39625703540feb50b6b7f938b3856d1f4886d2e585d88274e62b1bd273fae09b",
- "sha256:3f5461c77649358610fb9694e790956b4238ac5d9e697a17f63619c096469afe",
- "sha256:4313f3bc901255b22f01663eeeae167468264fdae0d32c25fc631d5d6e15b502",
- "sha256:442356e8924fe1a121f8c87866b0ecdc785757fd28924b17c20493961b3d6697",
- "sha256:44cb1a1326a0264480a789e6100dc3e07122eb8cd1ad6b784a3d47d13ed1d89c",
- "sha256:44d323aa80a867cb6db6bebb4bbec677c6478e38128847f2c6b0f70eae984d72",
- "sha256:499368eb904566fbdf1a3836a1532000ef1308f34a1bcbf36e6351904cced771",
- "sha256:4b01d9cfcb616eeb6d40f02e66bebfe7b06d9f2ef81641fdd50b8dd981166e0b",
- "sha256:5720ebbc7a1b46c33a42d489d25d36c64c419f52159485e55589fbec648ea49a",
- "sha256:5cc5e0d069c56645446c45a4b5010d4b33ac6c5ebfd369a791b5f097e46a3c08",
- "sha256:618b18c3a2360ac940a5503da14fa4f880c5b9bc315ec20a830357bcc62e6bae",
- "sha256:6435a66957cdba1a0b16f368bde03ce9c79c57306b39510da6ae5312a1a5b2c1",
- "sha256:647ec5bee7e4ec9f1034ab48173b5fa970d9a991e565549b965e93331f1328fe",
- "sha256:6e1e9e447856e9b7b3d38e1316ae9a8c92e7536ef48373de758ea055edfd5db5",
- "sha256:6ef1550bb5f55f71b97a6a395286db07f7f2c01c8890e613556df9a51da91e8d",
- "sha256:6ffa45cc55b18d4ac1396d1ddb029f139b1d3480f1594130e62bceadf2e1a838",
- "sha256:77f31cebd8c27a36af6c7346055ac564946e562080ee1a838da724585c67474f",
- "sha256:7a3b5b2c012d70c63d9d13c57ed1603709a4d9d7d473e4a9dfece0e4ea3d5f51",
- "sha256:7a7ddf981a0b953ade1c2379052d47ccda2f58ab678fca0671c7c7ca2f67aac2",
- "sha256:84de955314aa5e8d469b00b14d6d714b008087a0222b0f743e7ffac34ef56aff",
- "sha256:8dcfd14c712aa9dd18049280bfb2f95700ff6a8bde645e09f17c3ed3f05a0130",
- "sha256:928f92f80e2e8d6567b87d3316c1fd9860ccfe36e87a9a7f5237d4cda8baa1ba",
- "sha256:9384b07cfd3045b37b05ed002d1c255db02fb96506ad65f0f9b776b762a7572e",
- "sha256:96726839a42429318017e67a42cca75d4f0d5248a809b3cc2e125445edd7d50d",
- "sha256:96bbec47beb131bbf4bae05d8ef99ad9e5738f12717cfbbf16648b78b0232e87",
- "sha256:9bcf97b971289be69638d8b1b616f7e557e1342debc7fc86cf89d3f08960e411",
- "sha256:a0cf4d814689e58f57ecd5d8c523e6538417ca2e72ff52c007c64065cef50fb2",
- "sha256:a7c6147c6306f537cff59409609508a1d2eff81199f0302dd456bb9e7ea50c39",
- "sha256:a9266644064779840feec0e34f10a89b3ff1d2d6b751fe90017abcad1864fa7c",
- "sha256:afbe85b50ade42ddff5669947afde9e8a610e64d2c80be046d67ec4368e555fa",
- "sha256:afcda759a69c6a8be3aae764ec6733155aa4a5ad9aad4f398b52ba4037942fe3",
- "sha256:b2fab23003c4bb2249729a7290a76c1dda38c438300fdf97d4e42bf78b19c810",
- "sha256:bd3f711f4c99da0091ced41dccdc1bcf8be0281dc314d6d9c6b6cf5df66f37a9",
- "sha256:be0c7c98e38a1e3ad7a6ff64af8b6d6db34bf5a41b1478e24c3c74d9e7f8ed42",
- "sha256:c1f2d7fd583fc79c240094b3e7237d88493814d4b300d013a42726c35a734bc9",
- "sha256:c5bba6b83fde4ca233cfda04cbd4685ab88696b0c8eaf76f7148969eab5e248a",
- "sha256:c6beeac698671baa558e82fa160be9761cf0eb25861943f4689ecf9000f8ebd0",
- "sha256:c7333e7239415076d1418dbfb7fa4df48f3a5b00f8fdf854fca549080455bc14",
- "sha256:c8a02f74ae419e3955af60f570d83187423e42e672a6433c5e292f1d23619269",
- "sha256:c9c23e62f3545c2216100603614f9e019e41b9403c47dd85b8e7e5015bf1bde0",
- "sha256:cca505829cdab58c2495ff418c96092d225a1bbd486f79017f6de915580d3c44",
- "sha256:d3108f0ad5c6b6d78eec5273219a5bbd884b4aacec17883ceefaac988850ce6e",
- "sha256:d4b8a1b6c7a68c73191f2ebd3bf66f7ce02f9c374e309bdb68ba886bbbf1b938",
- "sha256:d6e274661c74195708fc4380a4ef64298926c5a50bb10fbae3d01627d7a075b7",
- "sha256:db2914de2559809fdbcf3e48f41b17a493b58cb7988d3e211f6b63126c55fe82",
- "sha256:e738aabff3586091221044b7a584865ddc4d6120346d12e28e788307cd731043",
- "sha256:e7f6173302f8a329ca5d1ee592af9e628d3ade87816e9958dcf7cdae2841def7",
- "sha256:e9d036a9a41fc78e8a3f10a86c2fc1098fca8fab8715ba9eb999ce4788d35df0",
- "sha256:ea142255d4901b03f89cb6a94411ecec117786a76fc9ab043af8f51dd50b5313",
- "sha256:ebd3e6b0c7d4954cca59d241970011f8d3327633d555051c430bd09ff49dc494",
- "sha256:ec656680fc53a13f849c71afd0c84a55c536206d524cbc831cde80abbe80489e",
- "sha256:ec8df0ff5a911c6d21957a9182402aad7bf060eaeffd77c9ea1c16aecab5adbf",
- "sha256:ed95d66745f53e129e935ad726167d3a6cb18c5d33df3165974d54742c373868",
- "sha256:ef2c9499b7bd1e24e473dc1a85de55d72fd084eea3d8bdeec7ee0720decb54fa",
- "sha256:f5252ba8b43906f206048fa569debf2cd0da0316e8d5b4d25abe53307f573941",
- "sha256:f737fef6e117856400afee4f17774cdea392b28ecf058833f5eca368a18cf1bf",
- "sha256:fc726c3fa8f606d07bd2b500e5dc4c0fd664c59be7788a16b9e34352c50b6b6b"
+ "sha256:012f176945af138abc10c4a48743327a92b4ca9adc7a0e078077cdb5dbab7be0",
+ "sha256:02c13415b5732fb6ee7ff64583a5e6ed1c57aa68f17d2bda79c04888dfdc2769",
+ "sha256:03b6002e20938fc6ee0918c81d9e776bebccc84690e2b03ed132331cca065ee5",
+ "sha256:04814571cb72d65a6899db6099e377ed00710bf2e3eafd2985166f2918beaf59",
+ "sha256:0580f2e12de2138f34debcd5d88894786453a76e98febaf3e8fe5db62d01c9bf",
+ "sha256:06a8e2ee1cbac16fe61e51e0b0c269400e781b13bcfc33f5425912391a542985",
+ "sha256:076bc454a7e6fd646bc82ea7f98296be0b1219b5e3ef8a488afbdd8e81fbac50",
+ "sha256:0c9527819b29cd2b9f52033e7fb9ff08073df49b4799c89cb5754624ecd98299",
+ "sha256:0dc49f42422163efb7e6f1df2636fe3db72713f6cd94688e339dbe33fe06d61d",
+ "sha256:14cdb5a9570be5a04eec2ace174a48ae85833c2aadc86de68f55541f66ce42ab",
+ "sha256:15fccaf62a4889527539ecb86834084ecf6e9ea70588efde86e8bc775e0e7542",
+ "sha256:24213ba85a419103e641e55c27dc7ff03536c4873470c2478cce3311ba1eee7b",
+ "sha256:31d5093d3acd02b31c649d3a69bb072d539d4c7659b87caa4f6d2bcf57c2fa2b",
+ "sha256:3691ed7726fef54e928fe26344d930c0c8575bc968c3e239c2e1a04bd8cf7838",
+ "sha256:386fbe79863eb564e9f3615b959e28b222259da0c48fd1be5929ac838bc65683",
+ "sha256:3bbbfff4c679c64e6e23cb213f57cc2c9165c9a65d63717108a644eb5a7398df",
+ "sha256:3de34936eb1a647aa919655ff8d38b618e9f6b7f250cc19a57a4bf7fd2062b6d",
+ "sha256:40d1c7a7f750b5648642586ba7206999650208dbe5afbcc5284bcec6579c9b91",
+ "sha256:44224d815853962f48fe124748227773acd9686eba6dc102578defd6fc99e8d9",
+ "sha256:47ad15a65fb41c570cd0ad9a9ff8012489e68176e7207ec7b82a0940dddfd8be",
+ "sha256:482cafb7dc886bebeb6c9ba7925e03591a62ab34298ee70d3dd47ba966370d2c",
+ "sha256:49c7dbbc1a559ae14fc48387a115b7d4bbc84b4a2c3b9299c31696953c2a5219",
+ "sha256:4b2c7ac59c5698a7a8207ba72d9e9c15b0fc484a560be0788b31312c2c5504e4",
+ "sha256:4cca22a61b7fe45da8fc73c3443150c3608750bbe27641fc7558ec5117b27fdf",
+ "sha256:4cfce37f31f20800a6a6620ce2cdd6737b82e42e06e6e9bd1b36f546feb3c44f",
+ "sha256:502a1464ccbc800b4b1995b302efaf426e8763fadf185e933c2931df7db9a199",
+ "sha256:53bf2097e05c2accc166c142a2090e4c6fd86581bde3fd9b2d3f9e93dda66ac1",
+ "sha256:593c114a2221444f30749cc5e5f4012488f56bd14de2af44fe23e1e9894a9c60",
+ "sha256:5d6958671b296febe7f5f859bea581a21c1d05430d1bbdcf2b393599b1cdce77",
+ "sha256:5ef359ebc6949e3a34c65ce20230fae70920714367c63afd80ea0c2702902ccf",
+ "sha256:613e5169f8ae77b1933e42e418a95931fb4867b2991fc311430b15901ed67079",
+ "sha256:61b9bae80ed1f338c42f57c16918853dc51775fb5cb61da70d590de14d8b5fb4",
+ "sha256:6362cc6c23c08d18ddbf0e8c4d5159b5df74fea1a5278ff4f2c79aed3f4e9f46",
+ "sha256:65a96e3e03300b41f261bbfd40dfdbf1c301e87eab7cd61c054b1f2e7c89b9e8",
+ "sha256:65e55ca7debae8faaffee0ebb4b47a51b4075f01e9b641c31e554fd376595c6c",
+ "sha256:68386d78743e6570f054fe7949d6cb37ef2b672b4d3405ce91fafa996f7d9b4d",
+ "sha256:68ff6f48b51bd78ea92b31079817aff539f6c8fc80b6b8d6ca347d7c02384e33",
+ "sha256:6ab29b8a0beb6f8eaf1e5049252cfe74adbaafd39ba91e10f18caeb0e99ffb34",
+ "sha256:77ae58586930ee6b2b6f696c82cf8e78c8016ec4795c53e36718365f6959dc82",
+ "sha256:77c4aa15a89847b9891abf97f3d4048f3c2d667e00f8a623c89ad2dccee6771b",
+ "sha256:78153314f26d5abef3239b4a9af20c229c6f3ecb97d4c1c01b22c4f87669820c",
+ "sha256:7852bbcb4d0d2f0c4d583f40c3bc750ee033265d80598d0f9cb6f372baa6b836",
+ "sha256:7e97d622cb083e86f18317282084bc9fbf261801b0192c34fe4b1febd9f7ae69",
+ "sha256:7f3dc0e330575f5b134918976a645e79adf333c0a1439dcf6899a80776c9ab39",
+ "sha256:80886dac673ceaef499de2f393fc80bb4481a129e6cb29e624a12e3296cc088f",
+ "sha256:811f23b3351ca532af598405db1093f018edf81368e689d1b508c57dcc6b6a32",
+ "sha256:86a5dfcc39309470bd7b68c591d84056d195428d5d2e0b5ccadfbaf25b026ebc",
+ "sha256:8b3cf2dc0f0690a33f2d2b2cb15db87a65f1c609f53c37e226f84edb08d10f52",
+ "sha256:8cc5203b817b748adccb07f36390feb730b1bc5f56683445bfe924fc270b8816",
+ "sha256:909af95a72cedbefe5596f0bdf3055740f96c1a4baa0dd11fd74ca4de0b4e3f1",
+ "sha256:974d3a2cce5fcfa32f06b13ccc8f20c6ad9c51802bb7f829eae8a1845c4019ec",
+ "sha256:98283b94cc0e11c73acaf1c9698dea80c830ca476492c0fe2622bd931f34b487",
+ "sha256:98f5635f7b74bcd4f6f72fcd85bea2154b323a9f05226a80bc7398d0c90763b0",
+ "sha256:99b7920e7165be5a9e9a3a7f1b680f06f68ff0d0328ff4079e5163990d046767",
+ "sha256:9bca390cb247dbfaec3c664326e034ef23882c3f3bfa5fbf0b56cad0320aaca5",
+ "sha256:9e2e576caec5c6a6b93f41626c9c02fc87cd91538b81a3670b2e04452a63def6",
+ "sha256:9ef405356ba989fb57f84cac66f7b0260772836191ccefbb987f414bcd2979d9",
+ "sha256:a55d2ad345684e7c3dd2c20d2f9572e9e1d5446d57200ff630e6ede7612e307f",
+ "sha256:ab7485222db0959a87fbe8125e233b5a6f01f4400785b36e8a7878170d8c3138",
+ "sha256:b1fc6b45010a8d0ff9e88f9f2418c6fd408c99c211257334aff41597ebece42e",
+ "sha256:b78f053a7ecfc35f0451d961dacdc671f4bcbc2f58241a7c820e9d82559844cf",
+ "sha256:b99acd4730ad1b196bfb03ee0803e4adac371ae8efa7e1cbc820200fc5ded109",
+ "sha256:be2b516f56ea883a3e14dda17059716593526e10fb6303189aaf5503937db408",
+ "sha256:beb39a6d60a709ae3fb3516a1581777e7e8b76933bb88c8f4420d875bb0267c6",
+ "sha256:bf3d1a519a324af764a46da4115bdbd566b3c73fb793ffb97f9111dbc684fc4d",
+ "sha256:c49a76c1038c2dd116fa443eba26bbb8e6c37e924e2513574856de3b6516be99",
+ "sha256:c5532f0441fc09c119e1dca18fbc0687e64fbeb45aa4d6a87211ceaee50a74c4",
+ "sha256:c6b9e6d7e41656d78e37ce754813fa44b455c3d0d0dced2a047def7dc5570b74",
+ "sha256:c87bf31b7fdab94ae3adbe4a48e711bfc5f89d21cf4c197e75561def39e223bc",
+ "sha256:cbad88a61fa743c5d283ad501b01c153820734118b65aee2bd7dbb735475ce0d",
+ "sha256:cf14627232dfa8730453752e9cdc210966490992234d77ff90bc8dc0dce361d5",
+ "sha256:db1d0b28fcb7f1d35600150c3e4b490775251dea70f894bf15c678fdd84eda6a",
+ "sha256:ddf5f7d877615f6a1e75971bfa5ac88609af3b74796ff3e06879e8422729fd01",
+ "sha256:e44a9a3c053b90c6f09b1bb4edd880959f5328cf63052503f892c41ea786d99f",
+ "sha256:efb15a17a12497685304b2d976cb4939e55137df7b09fa53f1b6a023f01fcb4e",
+ "sha256:fbbaea811a2bba171197b08eea288b9402faa2bab2ba0858eecdd0a4105753a3"
],
"markers": "python_version >= '3.9'",
- "version": "==3.11.9"
+ "version": "==3.11.10"
},
"aiosignal": {
"hashes": [
@@ -345,7 +345,6 @@
"sha256:3c672a53c0fb4725a29c303be906d3c1fa99c32f58abe008a82705f9ee96f40b",
"sha256:404fdc66ee5f83a1388be54300ae978b2efd538018de18556dde92575e05defc",
"sha256:4ac4c9f37eba52cb6fbeaf5b59c152ea976726b865bd4cf87883a7e7006cc543",
- "sha256:60eb32934076fa07e4316b7b2742fa52cbb190b42c2df2863dbc4230a0a9b385",
"sha256:62901fb618f74d7d81bf408c8719e9ec14d863086efe4185afd07c352aee1d2c",
"sha256:660cb7312a08bc38be15b696462fa7cc7cd85c3ed9c576e81f4dc4d8b2b31591",
"sha256:708ee5f1bafe76d041b53a4f95eb28cdeb8d18da17e597d46d7833ee59b97ede",
@@ -353,7 +352,6 @@
"sha256:831c3c4d0774e488fdc83a1923b49b9957d33287de923d58ebd3cec47a0ae43f",
"sha256:84111ad4ff3f6253820e6d3e58be2cc2a00adb29335d4cacb5ab4d4d34f2a123",
"sha256:8b3e6eae66cf54701ee7d9c83c30ac0a1e3fa17be486033000f2a73a12ab507c",
- "sha256:9abcc2e083cbe8dde89124a47e5e53ec38751f0d7dfd36801008f316a127d7ba",
"sha256:9e6fc8a08e116fb7c7dd1f040074c9d7b51d74a8ea40d4df2fc7aa08b76b9e6c",
"sha256:a01956ddfa0a6790d594f5b34fc1bfa6098aca434696a03cfdbe469b8ed79285",
"sha256:abc998e0c0eee3c8a1904221d3f67dcfa76422b23620173e28c11d3e626c21bd",
@@ -375,9 +373,9 @@
},
"dbrepo": {
"hashes": [
- "sha256:292c2631816ca3dbdbd243e4c006c4bd39d512f5ae7e4b10070102c85ec58a10"
+ "sha256:b746668ca7830897aa9ab7660c2b6cf420a6cde09afb87665f9fa9cb4d6a2314"
],
- "path": "./lib/dbrepo-1.5.2.tar.gz"
+ "path": "./lib/dbrepo-1.5.3.tar.gz"
},
"docker": {
"hashes": [
@@ -860,64 +858,64 @@
},
"numpy": {
"hashes": [
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+ "sha256:0557eebc699c1c34cccdd8c3778c9294e8196df27d713706895edc6f57d29608",
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+ "sha256:b606b1aaf802e6468c2608c65ff7ece53eae1a6874b3765f69b8ceb20c5fa78e",
+ "sha256:b6207dc8fb3c8cb5668e885cef9ec7f70189bec4e276f0ff70d5aa078d32c88e",
+ "sha256:c2aed8fcf8abc3020d6a9ccb31dbc9e7d7819c56a348cc88fd44be269b37427e",
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+ "sha256:d35717333b39d1b6bb8433fa758a55f1081543de527171543a2b710551d40881",
+ "sha256:df12a1f99b99f569a7c2ae59aa2d31724e8d835fc7f33e14f4792e3071d11221",
+ "sha256:e09d40edfdb4e260cb1567d8ae770ccf3b8b7e9f0d9b5c2a9992696b30ce2742",
+ "sha256:e12c6c1ce84628c52d6367863773f7c8c8241be554e8b79686e91a43f1733773",
+ "sha256:e2b8cd48a9942ed3f85b95ca4105c45758438c7ed28fff1e4ce3e57c3b589d8e",
+ "sha256:e500aba968a48e9019e42c0c199b7ec0696a97fa69037bea163b55398e390529",
+ "sha256:ebe5e59545401fbb1b24da76f006ab19734ae71e703cdb4a8b347e84a0cece67",
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+ "sha256:f8c8b141ef9699ae777c6278b52c706b653bf15d135d302754f6b2e90eb30367"
],
"markers": "python_version == '3.11'",
- "version": "==2.1.3"
+ "version": "==2.2.0"
},
"opensearch-py": {
"hashes": [
@@ -1361,120 +1359,120 @@
},
"rpds-py": {
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+ "version": "==0.22.3"
},
"six": {
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},
"sqlalchemy": {
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@@ -1893,72 +1891,72 @@
},
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- "sha256:193e3bffca48ad74b8c764fb4492dd875038a2f9925530cb094db92bb5e47bed",
- "sha256:1defe91d41ce1bd44b40fabf071e6a01a5aa14de4a31b986aa9dfd1b3e3e414a",
- "sha256:1f188a2402f8359cf0c4b1fe89eea40dc13b52e7b4fd4812450da9fcd210181d",
- "sha256:202a2d645c5a46b84992f55b0a3affe4f0ba6b4c611abec32ee88358db4bb649",
- "sha256:24eda3a24a38157eee639ca9afe45eefa8d2420d49468819ac5f88b10de84f4c",
- "sha256:2e4e0f60cb4bd7396108823548e82fdab72d4d8a65e58e2c19bbbc2f1e2bfa4b",
- "sha256:379c111d3558272a2cae3d8e57e6b6e6f4fe652905692d54bad5ea0ca37c5ad4",
- "sha256:37cda8712145917105e07aab96388ae76e787270ec04bcb9d5cc786d7cbb8443",
- "sha256:38c51297b35b3ed91670e1e4efb702b790002e3245a28c76e627478aa3c10d83",
- "sha256:3985b9be361d8fb6b2d1adc9924d01dec575a1d7453a14cccd73225cb79243ee",
- "sha256:3988665ee376abce49613701336544041f2117de7b7fbfe91b93d8ff8b151c8e",
- "sha256:3ac47fa29d8d41059ea3df65bd3ade92f97ee4910ed638e87075b8e8ce69599e",
- "sha256:3b4b4299dd0d2c67caaaf286d58aef5e75b125b95615dda4542561a5a566a1e3",
- "sha256:3ea8bb1ab9558374c0ab591783808511d135a833c3ca64a18ec927f20c4030f0",
- "sha256:3fe47da3e4fda5f1abb5709c156eca207eacf8007304ce3019eb001e7a7204cb",
- "sha256:428ac484592f780e8cd7b6b14eb568f7c85460c92e2a37cb0c0e5186e1a0d076",
- "sha256:44e6c85bbdc809383b509d732b06419fb4544dca29ebe18480379633623baafb",
- "sha256:4674f0daa1823c295845b6a740d98a840d7a1c11df00d1fd62614545c1583787",
- "sha256:4be32da0c3827ac9132bb488d331cb32e8d9638dd41a0557c5569d57cf22c9c1",
- "sha256:4db3ed6a907b555e57cc2e6f14dc3a4c2458cdad8919e40b5357ab9b6db6c43e",
- "sha256:5c52a036535d12590c32c49209e79cabaad9f9ad8aa4cbd875b68c4d67a9cbce",
- "sha256:629a1ba2115dce8bf75a5cce9f2486ae483cb89c0145795603d6554bdc83e801",
- "sha256:62a66ff235e4c2e37ed3b6104d8b478d767ff73838d1222132a7a026aa548764",
- "sha256:63068a11171e4276f6ece913bde059e77c713b48c3a848814a6537f35afb8365",
- "sha256:63c19702db10ad79151a059d2d6336fe0c470f2e18d0d4d1a57f7f9713875dcf",
- "sha256:644ec81edec0f4ad17d51c838a7d01e42811054543b76d4ba2c5d6af741ce2a6",
- "sha256:6535d996f6537ecb298b4e287a855f37deaf64ff007162ec0afb9ab8ba3b8b71",
- "sha256:6f4548c5ead23ad13fb7a2c8ea541357474ec13c2b736feb02e19a3085fac002",
- "sha256:716a78a342679cd1177bc8c2fe957e0ab91405bd43a17094324845200b2fddf4",
- "sha256:74610105ebd6f33d7c10f8907afed696e79c59e3043c5f20eaa3a46fddf33b4c",
- "sha256:768939f7c4353c0fac2f7c37897e10b1414b571fd85dd9fc49e6a87e37a2e0d8",
- "sha256:86cffe9c6dfcfe22e28027069725c7f57f4b868a3f86e81d1c62462764dc46d4",
- "sha256:8aae5aea53cbfe024919715eca696b1a3201886ce83790537d1c3668459c7146",
- "sha256:8b2b8503edb06822c86d82fa64a4a5cb0760bb8f31f26e138ec743f422f37cfc",
- "sha256:912e95017ff51dc3d7b6e2be158dedc889d9a5cc3382445589ce554f1a34c0ea",
- "sha256:9a7b8ac36fd688c8361cbc7bf1cb5866977ece6e0b17c34aa0df58bda4fa18a4",
- "sha256:9e89d5c8509fbd6c03d0dd1972925b22f50db0792ce06324ba069f10787429ad",
- "sha256:ae270e79f7e169ccfe23284ff5ea2d52a6f401dc01b337efb54b3783e2ce3f28",
- "sha256:b07c25d52b1c16ce5de088046cd2432b30f9ad5e224ff17c8f496d9cb7d1d451",
- "sha256:b39e6011cd06822eb964d038d5dff5da5d98652b81f5ecd439277b32361a3a50",
- "sha256:bd55f8fc8fa494958772a2a7302b0354ab16e0b9272b3c3d83cdb5bec5bd1779",
- "sha256:c15b32a7aca8038ed7644f854bf17b663bc38e1671b5d6f43f9a2b2bd0c46f63",
- "sha256:c1b4474beee02ede1eef86c25ad4600a424fe36cff01a6103cb4533c6bf0169e",
- "sha256:c79c0685f142ca53256722a384540832420dff4ab15fec1863d7e5bc8691bdcc",
- "sha256:c9ebfb2507751f7196995142f057d1324afdab56db1d9743aab7f50289abd022",
- "sha256:d7ad66e8e50225ebf4236368cc43c37f59d5e6728f15f6e258c8639fa0dd8e6d",
- "sha256:d82ab6816c3277dc962cfcdc85b1efa0e5f50fb2c449432deaf2398a2928ab94",
- "sha256:d9fd2547e6decdbf985d579cf3fc78e4c1d662b9b0ff7cc7862baaab71c9cc5b",
- "sha256:de38add67a0af869b0d79c525d3e4588ac1ffa92f39116dbe0ed9753f26eba7d",
- "sha256:e19122296822deafce89a0c5e8685704c067ae65d45e79718c92df7b3ec3d331",
- "sha256:e44961e36cb13c495806d4cac67640ac2866cb99044e210895b506c26ee63d3a",
- "sha256:e4c81ed2820b9023a9a90717020315e63b17b18c274a332e3b6437d7ff70abe0",
- "sha256:e683e6ecc587643f8cde8f5da6768e9d165cd31edf39ee90ed7034f9ca0eefee",
- "sha256:f39e2f3530ed1626c66e7493be7a8423b023ca852aacdc91fb30162c350d2a92",
- "sha256:f56f49b2553d7dd85fd86e029515a221e5c1f8cb3d9c38b470bc38bde7b8445a",
- "sha256:fb9fc32399dca861584d96eccd6c980b69bbcd7c228d06fb74fe53e007aa8ef9"
+ "sha256:0824a28ec542a0be22f60c6ac36d679e0e262e5353203bea81d44ee81fe9c6d4",
+ "sha256:085161be5f3b30fd9b3e7b9a8c301f935c8313dcf928a07b116324abea2c1c2c",
+ "sha256:0ae1387db4aecb1f485fb70a6c0148c6cdaebb6038f1d40089b1fc84a5db556f",
+ "sha256:0d59fd927b1f04de57a2ba0137166d31c1a6dd9e764ad4af552912d70428c92b",
+ "sha256:0f957943bc718b87144ecaee70762bc2bc3f1a7a53c7b861103546d3a403f0a6",
+ "sha256:13a9e2d3ee855db3dd6ea1ba5203316a1b1fd8eaeffc37c5b54987e61e4194ae",
+ "sha256:1a330812d9cc7ac2182586f6d41b4d0fadf9be9049f350e0efb275c8ee8eb692",
+ "sha256:22be16571504c9ccea919fcedb459d5ab20d41172056206eb2994e2ff06118a4",
+ "sha256:2d10e07aa2b91835d6abec555ec8b2733347956991901eea6ffac295f83a30e4",
+ "sha256:35371f8438028fdccfaf3570b31d98e8d9eda8bb1d6ab9473f5a390969e98717",
+ "sha256:3c026eb44f744acaa2bda7493dad903aa5bf5fc4f2554293a798d5606710055d",
+ "sha256:41ff7b0da5af71a51b53f501a3bac65fb0ec311ebed1632e58fc6107f03b9198",
+ "sha256:4401ae5fc52ad8d26d2a5d8a7428b0f0c72431683f8e63e42e70606374c311a1",
+ "sha256:44349150f6811b44b25574839b39ae35291f6496eb795b7366fef3bd3cf112d3",
+ "sha256:447af20e25fdbe16f26e84eb714ba21d98868705cb138252d28bc400381f6ffb",
+ "sha256:4a8d8977b0c6ef5aeadcb644da9e69ae0dcfe66ec7f368c89c72e058bd71164d",
+ "sha256:4e12ae8cc979cf83d258acb5e1f1cf2f3f83524d1564a49d20b8bec14b637f08",
+ "sha256:592ac539812e9b46046620341498caf09ca21023c41c893e1eb9dbda00a70cbf",
+ "sha256:5e6b86b5847a016d0fbd31ffe1001b63355ed309651851295315031ea7eb5a9b",
+ "sha256:608a7fd78c67bee8936378299a6cb9f5149bb80238c7a566fc3e6717a4e68710",
+ "sha256:61f70dc68bd36810972e55bbbe83674ea073dd1dcc121040a08cdf3416c5349c",
+ "sha256:65dad5a248823a4996724a88eb51d4b31587aa7aa428562dbe459c684e5787ae",
+ "sha256:777abfab476cf83b5177b84d7486497e034eb9eaea0d746ce0c1268c71652077",
+ "sha256:7e216d8044a356fc0337c7a2a0536d6de07888d7bcda76febcb8adc50bdbbd00",
+ "sha256:85d9636f72e8991a1706b2b55b06c27545448baf9f6dbf51c4004609aacd7dcb",
+ "sha256:899b8cd4781c400454f2f64f7776a5d87bbd7b3e7f7bda0cb18f857bb1334664",
+ "sha256:8a289d23d4c46f1a82d5db4abeb40b9b5be91731ee19a379d15790e53031c014",
+ "sha256:8d2dfa71665a29b153a9681edb1c8d9c1ea50dfc2375fb4dac99ea7e21a0bcd9",
+ "sha256:8e3c3e38930cfb729cb8137d7f055e5a473ddaf1217966aa6238c88bd9fd50e6",
+ "sha256:8f8770dfc6e2c6a2d4569f411015c8d751c980d17a14b0530da2d7f27ffdd88e",
+ "sha256:932fc826442132dde42ee52cf66d941f581c685a6313feebed358411238f60f9",
+ "sha256:96d636c77af18b5cb664ddf12dab9b15a0cfe9c0bde715da38698c8cea748bfa",
+ "sha256:97ddc94d46088304772d21b060041c97fc16bdda13c6c7f9d8fcd8d5ae0d8611",
+ "sha256:98caba4476a6c8d59ec1eb00c7dd862ba9beca34085642d46ed503cc2d440d4b",
+ "sha256:9901d36492009a0a9b94b20e52ebfc8453bf49bb2b27bca2c9706f8b4f5a554a",
+ "sha256:99e266ae0b5d15f1ca8d278a668df6f51cc4b854513daab5cae695ed7b721cf8",
+ "sha256:9c38bf15a40ccf5619fa2fe8f26106c7e8e080d7760aeccb3722664c8656b030",
+ "sha256:a27801adef24cc30871da98a105f77995e13a25a505a0161911f6aafbd66e678",
+ "sha256:abd3e72dd5b97e3af4246cdada7738ef0e608168de952b837b8dd7e90341f015",
+ "sha256:adb697c0bd35100dc690de83154627fbab1f4f3c0386df266dded865fc50a902",
+ "sha256:b12c6b18269ca471eedd41c1b6a1065b2f7827508edb9a7ed5555e9a56dcfc97",
+ "sha256:b9389a429e0e5142e69d5bf4a435dd688c14478a19bb901735cdf75e57b13845",
+ "sha256:ba9e7484d286cd5a43744e5f47b0b3fb457865baf07bafc6bee91896364e1419",
+ "sha256:bb5555cff66c4d3d6213a296b360f9e1a8e323e74e0426b6c10ed7f4d021e464",
+ "sha256:be57b6d56e49c2739cdf776839a92330e933dd5e5d929966fbbd380c77f060be",
+ "sha256:c69e42c892c018cd3c8d90da61d845f50a8243062b19d228189b0224150018a9",
+ "sha256:ccc660a77e1c2bf24ddbce969af9447a9474790160cfb23de6be4fa88e3951c7",
+ "sha256:d5275455b3e4627c8e7154feaf7ee0743c2e7af82f6e3b561967b1cca755a0be",
+ "sha256:d75cded8a3cff93da9edc31446872d2997e327921d8eed86641efafd350e1df1",
+ "sha256:d872ec5aeb086cbea771c573600d47944eea2dcba8be5f3ee649bfe3cb8dc9ba",
+ "sha256:d891c136b5b310d0e702e186d70cd16d1119ea8927347045124cb286b29297e5",
+ "sha256:db1dab894cc139f67822a92910466531de5ea6034ddfd2b11c0d4c6257168073",
+ "sha256:e28bf44afa2b187cc9f41749138a64435bf340adfcacb5b2290c070ce99839d4",
+ "sha256:e5ea1cf0872ee455c03e5674b5bca5e3e68e159379c1af0903e89f5eba9ccc3a",
+ "sha256:e77363e8425325384f9d49272c54045bbed2f478e9dd698dbc65dbc37860eb0a",
+ "sha256:ee5defd1733fd6ec08b168bd4f5387d5b322f45ca9e0e6c817ea6c4cd36313e3",
+ "sha256:f1592791f8204ae9166de22ba7e6705fa4ebd02936c09436a1bb85aabca3e599",
+ "sha256:f2d1ec60d6d256bdf298cb86b78dd715980828f50c46701abc3b0a2b3f8a0dc0",
+ "sha256:f3ca78518bc6bc92828cd11867b121891d75cae4ea9e908d72030609b996db1b",
+ "sha256:f7b15f589593110ae767ce997775d645b47e5cbbf54fd322f8ebea6277466cec",
+ "sha256:fd1213c86e48dfdc5a0cc676551db467495a95a662d2396ecd58e719191446e1",
+ "sha256:ff74026a461eb0660366fb01c650c1d00f833a086b336bdad7ab00cc952072b3"
],
"index": "pypi",
"markers": "python_version >= '3.9'",
- "version": "==7.6.8"
+ "version": "==7.6.9"
},
"idna": {
"hashes": [
diff --git a/dbrepo-search-service/init/Pipfile.lock b/dbrepo-search-service/init/Pipfile.lock
index c08493b2f96cd43463da5e7886036514911b5ad1..9f92191fbaffa2a291ee912f33ad482124a68fa2 100644
--- a/dbrepo-search-service/init/Pipfile.lock
+++ b/dbrepo-search-service/init/Pipfile.lock
@@ -26,85 +26,85 @@
},
"aiohttp": {
"hashes": [
- "sha256:0411777249f25d11bd2964a230b3ffafcbed6cd65d0f2b132bc2b8f5b8c347c7",
- "sha256:0a97d657f6cf8782a830bb476c13f7d777cfcab8428ac49dde15c22babceb361",
- "sha256:0b5a5009b0159a8f707879dc102b139466d8ec6db05103ec1520394fdd8ea02c",
- "sha256:0bcb7f6976dc0b6b56efde13294862adf68dd48854111b422a336fa729a82ea6",
- "sha256:14624d96f0d69cf451deed3173079a68c322279be6030208b045ab77e1e8d550",
- "sha256:15c4e489942d987d5dac0ba39e5772dcbed4cc9ae3710d1025d5ba95e4a5349c",
- "sha256:176f8bb8931da0613bb0ed16326d01330066bb1e172dd97e1e02b1c27383277b",
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- "sha256:1a8b13b9950d8b2f8f58b6e5842c4b842b5887e2c32e3f4644d6642f1659a530",
- "sha256:202f40fb686e5f93908eee0c75d1e6fbe50a43e9bd4909bf3bf4a56b560ca180",
- "sha256:21cbe97839b009826a61b143d3ca4964c8590d7aed33d6118125e5b71691ca46",
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- "sha256:28f29bce89c3b401a53d6fd4bee401ee943083bf2bdc12ef297c1d63155070b0",
- "sha256:2ac9fd83096df36728da8e2f4488ac3b5602238f602706606f3702f07a13a409",
- "sha256:30f9f89ae625d412043f12ca3771b2ccec227cc93b93bb1f994db6e1af40a7d3",
- "sha256:317251b9c9a2f1a9ff9cd093775b34c6861d1d7df9439ce3d32a88c275c995cd",
- "sha256:31de2f10f63f96cc19e04bd2df9549559beadd0b2ee2da24a17e7ed877ca8c60",
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- "sha256:39625703540feb50b6b7f938b3856d1f4886d2e585d88274e62b1bd273fae09b",
- "sha256:3f5461c77649358610fb9694e790956b4238ac5d9e697a17f63619c096469afe",
- "sha256:4313f3bc901255b22f01663eeeae167468264fdae0d32c25fc631d5d6e15b502",
- "sha256:442356e8924fe1a121f8c87866b0ecdc785757fd28924b17c20493961b3d6697",
- "sha256:44cb1a1326a0264480a789e6100dc3e07122eb8cd1ad6b784a3d47d13ed1d89c",
- "sha256:44d323aa80a867cb6db6bebb4bbec677c6478e38128847f2c6b0f70eae984d72",
- "sha256:499368eb904566fbdf1a3836a1532000ef1308f34a1bcbf36e6351904cced771",
- "sha256:4b01d9cfcb616eeb6d40f02e66bebfe7b06d9f2ef81641fdd50b8dd981166e0b",
- "sha256:5720ebbc7a1b46c33a42d489d25d36c64c419f52159485e55589fbec648ea49a",
- "sha256:5cc5e0d069c56645446c45a4b5010d4b33ac6c5ebfd369a791b5f097e46a3c08",
- "sha256:618b18c3a2360ac940a5503da14fa4f880c5b9bc315ec20a830357bcc62e6bae",
- "sha256:6435a66957cdba1a0b16f368bde03ce9c79c57306b39510da6ae5312a1a5b2c1",
- "sha256:647ec5bee7e4ec9f1034ab48173b5fa970d9a991e565549b965e93331f1328fe",
- "sha256:6e1e9e447856e9b7b3d38e1316ae9a8c92e7536ef48373de758ea055edfd5db5",
- "sha256:6ef1550bb5f55f71b97a6a395286db07f7f2c01c8890e613556df9a51da91e8d",
- "sha256:6ffa45cc55b18d4ac1396d1ddb029f139b1d3480f1594130e62bceadf2e1a838",
- "sha256:77f31cebd8c27a36af6c7346055ac564946e562080ee1a838da724585c67474f",
- "sha256:7a3b5b2c012d70c63d9d13c57ed1603709a4d9d7d473e4a9dfece0e4ea3d5f51",
- "sha256:7a7ddf981a0b953ade1c2379052d47ccda2f58ab678fca0671c7c7ca2f67aac2",
- "sha256:84de955314aa5e8d469b00b14d6d714b008087a0222b0f743e7ffac34ef56aff",
- "sha256:8dcfd14c712aa9dd18049280bfb2f95700ff6a8bde645e09f17c3ed3f05a0130",
- "sha256:928f92f80e2e8d6567b87d3316c1fd9860ccfe36e87a9a7f5237d4cda8baa1ba",
- "sha256:9384b07cfd3045b37b05ed002d1c255db02fb96506ad65f0f9b776b762a7572e",
- "sha256:96726839a42429318017e67a42cca75d4f0d5248a809b3cc2e125445edd7d50d",
- "sha256:96bbec47beb131bbf4bae05d8ef99ad9e5738f12717cfbbf16648b78b0232e87",
- "sha256:9bcf97b971289be69638d8b1b616f7e557e1342debc7fc86cf89d3f08960e411",
- "sha256:a0cf4d814689e58f57ecd5d8c523e6538417ca2e72ff52c007c64065cef50fb2",
- "sha256:a7c6147c6306f537cff59409609508a1d2eff81199f0302dd456bb9e7ea50c39",
- "sha256:a9266644064779840feec0e34f10a89b3ff1d2d6b751fe90017abcad1864fa7c",
- "sha256:afbe85b50ade42ddff5669947afde9e8a610e64d2c80be046d67ec4368e555fa",
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],
"markers": "python_version >= '3.9'",
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+ "version": "==3.11.10"
},
"aiosignal": {
"hashes": [
@@ -593,64 +593,64 @@
},
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+ "sha256:40deb10198bbaa531509aad0cd2f9fadb26c8b94070831e2208e7df543562b74",
+ "sha256:440cfb3db4c5029775803794f8638fbdbf71ec702caf32735f53b008e1eaece3",
+ "sha256:4723a50e1523e1de4fccd1b9a6dcea750c2102461e9a02b2ac55ffeae09a4410",
+ "sha256:4bddbaa30d78c86329b26bd6aaaea06b1e47444da99eddac7bf1e2fab717bd72",
+ "sha256:4e58666988605e251d42c2818c7d3d8991555381be26399303053b58a5bbf30d",
+ "sha256:54dc1d6d66f8d37843ed281773c7174f03bf7ad826523f73435deb88ba60d2d4",
+ "sha256:57fcc997ffc0bef234b8875a54d4058afa92b0b0c4223fc1f62f24b3b5e86038",
+ "sha256:58b92a5828bd4d9aa0952492b7de803135038de47343b2aa3cc23f3b71a3dc4e",
+ "sha256:5a145e956b374e72ad1dff82779177d4a3c62bc8248f41b80cb5122e68f22d13",
+ "sha256:6ab153263a7c5ccaf6dfe7e53447b74f77789f28ecb278c3b5d49db7ece10d6d",
+ "sha256:7832f9e8eb00be32f15fdfb9a981d6955ea9adc8574c521d48710171b6c55e95",
+ "sha256:7fe4bb0695fe986a9e4deec3b6857003b4cfe5c5e4aac0b95f6a658c14635e31",
+ "sha256:7fe8f3583e0607ad4e43a954e35c1748b553bfe9fdac8635c02058023277d1b3",
+ "sha256:85ad7d11b309bd132d74397fcf2920933c9d1dc865487128f5c03d580f2c3d03",
+ "sha256:9874bc2ff574c40ab7a5cbb7464bf9b045d617e36754a7bc93f933d52bd9ffc6",
+ "sha256:a184288538e6ad699cbe6b24859206e38ce5fba28f3bcfa51c90d0502c1582b2",
+ "sha256:a222d764352c773aa5ebde02dd84dba3279c81c6db2e482d62a3fa54e5ece69b",
+ "sha256:a50aeff71d0f97b6450d33940c7181b08be1441c6c193e678211bff11aa725e7",
+ "sha256:a55dc7a7f0b6198b07ec0cd445fbb98b05234e8b00c5ac4874a63372ba98d4ab",
+ "sha256:a62eb442011776e4036af5c8b1a00b706c5bc02dc15eb5344b0c750428c94219",
+ "sha256:a7d41d1612c1a82b64697e894b75db6758d4f21c3ec069d841e60ebe54b5b571",
+ "sha256:a98f6f20465e7618c83252c02041517bd2f7ea29be5378f09667a8f654a5918d",
+ "sha256:afe8fb968743d40435c3827632fd36c5fbde633b0423da7692e426529b1759b1",
+ "sha256:b0b227dcff8cdc3efbce66d4e50891f04d0a387cce282fe1e66199146a6a8fca",
+ "sha256:b30042fe92dbd79f1ba7f6898fada10bdaad1847c44f2dff9a16147e00a93661",
+ "sha256:b606b1aaf802e6468c2608c65ff7ece53eae1a6874b3765f69b8ceb20c5fa78e",
+ "sha256:b6207dc8fb3c8cb5668e885cef9ec7f70189bec4e276f0ff70d5aa078d32c88e",
+ "sha256:c2aed8fcf8abc3020d6a9ccb31dbc9e7d7819c56a348cc88fd44be269b37427e",
+ "sha256:cb24cca1968b21355cc6f3da1a20cd1cebd8a023e3c5b09b432444617949085a",
+ "sha256:cff210198bb4cae3f3c100444c5eaa573a823f05c253e7188e1362a5555235b3",
+ "sha256:d35717333b39d1b6bb8433fa758a55f1081543de527171543a2b710551d40881",
+ "sha256:df12a1f99b99f569a7c2ae59aa2d31724e8d835fc7f33e14f4792e3071d11221",
+ "sha256:e09d40edfdb4e260cb1567d8ae770ccf3b8b7e9f0d9b5c2a9992696b30ce2742",
+ "sha256:e12c6c1ce84628c52d6367863773f7c8c8241be554e8b79686e91a43f1733773",
+ "sha256:e2b8cd48a9942ed3f85b95ca4105c45758438c7ed28fff1e4ce3e57c3b589d8e",
+ "sha256:e500aba968a48e9019e42c0c199b7ec0696a97fa69037bea163b55398e390529",
+ "sha256:ebe5e59545401fbb1b24da76f006ab19734ae71e703cdb4a8b347e84a0cece67",
+ "sha256:f0dd071b95bbca244f4cb7f70b77d2ff3aaaba7fa16dc41f58d14854a6204e6c",
+ "sha256:f8c8b141ef9699ae777c6278b52c706b653bf15d135d302754f6b2e90eb30367"
],
"markers": "python_version == '3.11'",
- "version": "==2.1.3"
+ "version": "==2.2.0"
},
"opensearch-py": {
"hashes": [
@@ -995,11 +995,11 @@
},
"six": {
"hashes": [
- "sha256:1e61c37477a1626458e36f7b1d82aa5c9b094fa4802892072e49de9c60c4c926",
- "sha256:8abb2f1d86890a2dfb989f9a77cfcfd3e47c2a354b01111771326f8aa26e0254"
+ "sha256:4721f391ed90541fddacab5acf947aa0d3dc7d27b2e1e8eda2be8970586c3274",
+ "sha256:ff70335d468e7eb6ec65b95b99d3a2836546063f63acc5171de367e834932a81"
],
"markers": "python_version >= '2.7' and python_version not in '3.0, 3.1, 3.2'",
- "version": "==1.16.0"
+ "version": "==1.17.0"
},
"testcontainers-core": {
"hashes": [
@@ -1227,72 +1227,72 @@
"develop": {
"coverage": {
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],
"index": "pypi",
"markers": "python_version >= '3.9'",
- "version": "==7.6.8"
+ "version": "==7.6.9"
},
"iniconfig": {
"hashes": [
diff --git a/dbrepo-search-service/init/lib/dbrepo-1.5.3.tar.gz b/dbrepo-search-service/init/lib/dbrepo-1.5.3.tar.gz
new file mode 100644
index 0000000000000000000000000000000000000000..2bb796d8fece2d97c3b2168248ff493dfa24a549
Binary files /dev/null and b/dbrepo-search-service/init/lib/dbrepo-1.5.3.tar.gz differ
diff --git a/dbrepo-search-service/lib/dbrepo-1.5.3.tar.gz b/dbrepo-search-service/lib/dbrepo-1.5.3.tar.gz
new file mode 100644
index 0000000000000000000000000000000000000000..2bb796d8fece2d97c3b2168248ff493dfa24a549
Binary files /dev/null and b/dbrepo-search-service/lib/dbrepo-1.5.3.tar.gz differ
diff --git a/dbrepo-ui/components/subset/Results.vue b/dbrepo-ui/components/subset/Results.vue
index 4ba414309c5009bdf88914150b6c1afe11e9a65e..ba063dcf5d575071d851da73bfcd0b9da80b5fed 100644
--- a/dbrepo-ui/components/subset/Results.vue
+++ b/dbrepo-ui/components/subset/Results.vue
@@ -171,10 +171,10 @@ export default {
}
},
mapResults (data) {
- this.result.headers = data.headers.map((h) => {
+ this.result.headers = data.headers.map((header) => {
return {
- title: Object.keys(h)[0],
- value: Object.keys(h)[0],
+ title: header,
+ value: header,
sortable: false
}
})
diff --git a/dbrepo-ui/composables/query-service.ts b/dbrepo-ui/composables/query-service.ts
index b3c21c605344db722259df375d7eba98404c65de..119915de2785763d549bdf3bf2d97379811f8fed 100644
--- a/dbrepo-ui/composables/query-service.ts
+++ b/dbrepo-ui/composables/query-service.ts
@@ -84,7 +84,12 @@ export const useQueryService = (): any => {
axios.post<QueryResultDto>(`/api/database/${databaseId}/subset`, data, {params: mapFilter(timestamp, page, size), timeout: 600_000})
.then((response) => {
console.info('Executed query with id', response.data.id, ' in database with id', databaseId)
- resolve(response.data)
+ const result: QueryResultDto = {
+ id: 1,
+ headers: [],
+ result: response.data
+ }
+ resolve(result)
})
.catch((error) => {
console.error('Failed to execute query', error)
@@ -100,7 +105,12 @@ export const useQueryService = (): any => {
axios.get<QueryResultDto>(`/api/database/${databaseId}/subset/${queryId}/data`, { params: mapFilter(null, page, size) })
.then((response) => {
console.info('Re-executed query in database with id', databaseId)
- resolve(response.data)
+ const result: QueryResultDto = {
+ id: Number(response.headers['x-id']),
+ headers: response.headers['x-headers'] ? response.headers['x-headers'].split(',') : [],
+ result: response.data
+ }
+ resolve(result)
})
.catch((error) => {
console.error('Failed to re-execute query', error)
diff --git a/dbrepo-ui/composables/table-service.ts b/dbrepo-ui/composables/table-service.ts
index 3d87e68d4febed8b825a56b1aada946bd6b0f4d5..102d5dfe58d24d937165b6524070f8b3eef1f3f2 100644
--- a/dbrepo-ui/composables/table-service.ts
+++ b/dbrepo-ui/composables/table-service.ts
@@ -74,7 +74,12 @@ export const useTableService = (): any => {
axios.get<QueryResultDto>(`/api/database/${databaseId}/table/${tableId}/data`, { params: mapFilter(timestamp, page, size) })
.then((response) => {
console.info('Got data for table with id', tableId, 'in database with id', databaseId)
- resolve(response.data)
+ const result: QueryResultDto = {
+ id: tableId,
+ headers: response.headers['x-headers'] ? response.headers['x-headers'].split(',') : [],
+ result: response.data
+ }
+ resolve(result)
})
.catch((error) => {
console.error('Failed to get data', error)
diff --git a/dbrepo-ui/composables/view-service.ts b/dbrepo-ui/composables/view-service.ts
index 5b3a25a149813ddf30f622fcb3d51fccb31f6730..0c17c353ef4b8faed5b28a5ee367806911de7db4 100644
--- a/dbrepo-ui/composables/view-service.ts
+++ b/dbrepo-ui/composables/view-service.ts
@@ -41,7 +41,12 @@ export const useViewService = (): any => {
axios.get<QueryResultDto>(`/api/database/${databaseId}/view/${viewId}/data`, { params: {page, size} })
.then((response) => {
console.info('Re-executed view with id', viewId, 'in database with id', databaseId)
- resolve(response.data)
+ const result: QueryResultDto = {
+ id: viewId,
+ headers: response.headers['x-headers'] ? response.headers['x-headers'].split(',') : [],
+ result: response.data
+ }
+ resolve(result)
})
.catch((error) => {
console.error('Failed to re-execute view', error)
diff --git a/dbrepo-ui/dto/index.ts b/dbrepo-ui/dto/index.ts
index ba4c41304209a08200b99de17077eed49d63e357..c068862f67ed7a64062fd5d8bd7e958b24dc12aa 100644
--- a/dbrepo-ui/dto/index.ts
+++ b/dbrepo-ui/dto/index.ts
@@ -537,7 +537,7 @@ interface ImportCsv {
interface QueryResultDto {
id: number | null;
result: any;
- headers: any;
+ headers: string[];
}
interface TableHistoryDto {
diff --git a/dbrepo-ui/locales/en-US.json b/dbrepo-ui/locales/en-US.json
index 8b6807bdbf24edd94b08087ef538d499e47784eb..3317a3ff2a02027d30da4efe416deaed97183cfc 100644
--- a/dbrepo-ui/locales/en-US.json
+++ b/dbrepo-ui/locales/en-US.json
@@ -312,8 +312,8 @@
"size": {
"title": "Size"
},
- "result-rows": {
- "title": "Rows"
+ "rows": {
+ "title": "Result Rows"
},
"owner": {
"title": "Owner"
diff --git a/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/data.vue b/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/data.vue
index d4d707fab871efd1773884d8eb5b23f720fba410..3ac8f40d645b44449f5607b9f3b031d06fa463d6 100644
--- a/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/data.vue
+++ b/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/data.vue
@@ -148,7 +148,7 @@ export default {
const url = URL.createObjectURL(data)
const link = document.createElement('a')
link.href = url
- link.download = 'table.csv'
+ link.download = 'subset.csv'
document.body.appendChild(link)
link.click()
})
diff --git a/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/info.vue b/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/info.vue
index 0d59b1ed25e405db59c50e3f492d9122f9fbf5ae..b9ed74a04287e3f8ecb76b88309399b31d234cd4 100644
--- a/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/info.vue
+++ b/dbrepo-ui/pages/database/[database_id]/subset/[subset_id]/info.vue
@@ -66,7 +66,7 @@
<pre>{{ $t('pages.subset.hash.prefix') }}:{{ result_hash }}</pre>
</v-list-item>
<v-list-item
- :title="$t('pages.subset.result-rows.title')"
+ :title="$t('pages.subset.rows.title')"
density="compact">
{{ subset.result_number }}
</v-list-item>
diff --git a/dbrepo-ui/pages/database/[database_id]/table/[table_id]/info.vue b/dbrepo-ui/pages/database/[database_id]/table/[table_id]/info.vue
index e109a7db3e2bb35926c5a8f87d700185286d4d53..1fb012598afa50820c8cf7aa79b4abee6bf408df 100644
--- a/dbrepo-ui/pages/database/[database_id]/table/[table_id]/info.vue
+++ b/dbrepo-ui/pages/database/[database_id]/table/[table_id]/info.vue
@@ -41,7 +41,7 @@
{{ sizeToHumanLabel(table.data_length) }}
</v-list-item>
<v-list-item
- :title="$t('pages.table.result-rows.title')">
+ :title="$t('pages.table.rows.title')">
{{ table.num_rows }}
</v-list-item>
<v-list-item
diff --git a/dbrepo-upload-service/pom.xml b/dbrepo-upload-service/pom.xml
index 9684d60454c1fecdeb0de0c3c88ffc2170a9e5f9..ba4567da8db9d4a61d03fdceb3e08aea29f558a7 100644
--- a/dbrepo-upload-service/pom.xml
+++ b/dbrepo-upload-service/pom.xml
@@ -5,13 +5,13 @@
<parent>
<groupId>org.springframework.boot</groupId>
<artifactId>spring-boot-starter-parent</artifactId>
- <version>3.1.12</version>
+ <version>3.3.5</version>
</parent>
<groupId>at.tuwien</groupId>
<artifactId>dbrepo-upload-service</artifactId>
<name>dbrepo-upload-service</name>
- <version>1.5.2</version>
+ <version>1.5.3</version>
<url>https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.5/</url>
<developers>
@@ -24,11 +24,11 @@
<properties>
<java.version>17</java.version>
- <spring-cloud.version>4.0.2</spring-cloud.version>
+ <spring-cloud.version>4.1.4</spring-cloud.version>
<mapstruct.version>1.5.5.Final</mapstruct.version>
<rabbitmq.version>5.20.0</rabbitmq.version>
<jackson-datatype.version>2.15.0</jackson-datatype.version>
- <commons-io.version>2.15.0</commons-io.version>
+ <commons-io.version>2.17.0</commons-io.version>
<commons-validator.version>1.8.0</commons-validator.version>
<guava.version>33.0.0-jre</guava.version>
<jacoco.version>0.8.12</jacoco.version>
diff --git a/dbrepo-upload-service/src/main/resources/application.yml b/dbrepo-upload-service/src/main/resources/application.yml
index 2d79e7cfae29b68515a6f008fd1aaae2c53f0461..e0285aa736a747004d99d90da05a0259ba0500a4 100644
--- a/dbrepo-upload-service/src/main/resources/application.yml
+++ b/dbrepo-upload-service/src/main/resources/application.yml
@@ -2,11 +2,6 @@ application:
title: DBRepo
version: '@project.version@'
spring:
- datasource:
- url: "jdbc:mariadb://${METADATA_HOST:metadata-db}:${METADATA_PORT:3306}/${METADATA_DB:dbrepo}${METADATA_JDBC_EXTRA_ARGS}"
- driver-class-name: org.mariadb.jdbc.Driver
- username: "${METADATA_USERNAME:root}"
- password: "${METADATA_DB_PASSWORD:dbrepo}"
jpa:
show-sql: false
open-in-view: false
@@ -16,13 +11,7 @@ spring:
jdbc:
time_zone: UTC
application:
- name: metadata-service
- rabbitmq:
- host: "${BROKER_HOST:broker-service}"
- virtual-host: "${BROKER_VIRTUALHOST:dbrepo}"
- username: "${BROKER_USERNAME:admin}"
- password: "${BROKER_PASSWORD:admin}"
- port: ${BROKER_PORT:5672}
+ name: upload-service
main:
banner-mode: off
management:
@@ -47,38 +36,3 @@ logging:
root: warn
at.tuwien.: "${LOG_LEVEL:info}"
org.springframework.web.servlet.mvc.method.annotation.ExceptionHandlerExceptionResolver: debug
-dbrepo:
- repository-name: "${REPOSITORY_NAME:Database Repository}"
- base-url: "${BASE_URL:http://localhost}"
- admin-email: "${ADMIN_EMAIL:noreply@example.com}"
- deleted-record: "${DELETED_RECORD:persistent}"
- granularity: "${GRANULARITY:YYYY-MM-DDThh:mm:ssZ}"
- exchangeName: "${BROKER_EXCHANGE_NAME:dbrepo}"
- queueName: "${BROKER_QUEUE_NAME:dbrepo}"
- connectionTimeout: "${SPARQL_CONNECTION_TIMEOUT:10000}"
- s3:
- accessKeyId: "${S3_ACCESS_KEY_ID:seaweedfsadmin}"
- secretAccessKey: "${S3_SECRET_ACCESS_KEY:seaweedfsadmin}"
- bucket: "${S3_BUCKET:dbrepo}"
- system:
- username: "${SYSTEM_USERNAME:admin}"
- password: "${SYSTEM_PASSWORD:admin}"
- endpoints:
- analyseService: "${ANALYSE_SERVICE_ENDPOINT:http://analyse-service:8080}"
- searchService: "${SEARCH_SERVICE_ENDPOINT:http://search-service:8080}"
- dataService: "${DATA_SERVICE_ENDPOINT:http://data-service:8080}"
- brokerService: "${BROKER_SERVICE_ENDPOINT:http://broker-service:15672}"
- authService: "${AUTH_SERVICE_ENDPOINT:http://auth-service:8080}"
- storageService: "${S3_ENDPOINT:http://storage-service:9000}"
- rorService: "${ROR_ENDPOINT:https://api.ror.org}"
- crossRefService: "${CROSSREF_ENDPOINT:http://data.crossref.org}"
- pid:
- base: "${BASE_URL:http://localhost}/pid/"
- jwt:
- public_key: "${JWT_PUBKEY:MIIBIjANBgkqhkiG9w0BAQEFAAOCAQ8AMIIBCgKCAQEAqqnHQ2BWWW9vDNLRCcxD++xZg/16oqMo/c1l+lcFEjjAIJjJp/HqrPYU/U9GvquGE6PbVFtTzW1KcKawOW+FJNOA3CGo8Q1TFEfz43B8rZpKsFbJKvQGVv1Z4HaKPvLUm7iMm8Hv91cLduuoWx6Q3DPe2vg13GKKEZe7UFghF+0T9u8EKzA/XqQ0OiICmsmYPbwvf9N3bCKsB/Y10EYmZRb8IhCoV9mmO5TxgWgiuNeCTtNCv2ePYqL/U0WvyGFW0reasIK8eg3KrAUj8DpyOgPOVBn3lBGf+3KFSYi+0bwZbJZWqbC/Xlk20Go1YfeJPRIt7ImxD27R/lNjgDO/MwIDAQAB}"
- keycloak:
- username: "${AUTH_SERVICE_ADMIN:admin}"
- password: "${AUTH_SERVICE_ADMIN_PASSWORD:admin}"
- client: "${AUTH_SERVICE_CLIENT:dbrepo-client}"
- clientSecret: "${AUTH_SERVICE_CLIENT_SECRET:MUwRc7yfXSJwX8AdRMWaQC3Nep1VjwgG}"
- website: "${BASE_URL:http://localhost}"
diff --git a/dbrepo-upload-service/src/test/resources/application.properties b/dbrepo-upload-service/src/test/resources/application.properties
index 088fec498b6cd74aba161d18ec30ad500e18bd4c..cb41084578e2b476f1d550d6f890234cbea64180 100644
--- a/dbrepo-upload-service/src/test/resources/application.properties
+++ b/dbrepo-upload-service/src/test/resources/application.properties
@@ -4,15 +4,8 @@ spring.profiles.active=local,junit
# disable discovery
spring.cloud.discovery.enabled=false
-# internal datasource
-spring.datasource.url=jdbc:h2:mem:testdb;DB_CLOSE_ON_EXIT=FALSE;INIT=CREATE SCHEMA IF NOT EXISTS DBREPO;NON_KEYWORDS=value
-spring.datasource.driverClassName=org.h2.Driver
-spring.datasource.username=sa
-spring.datasource.password=password
-spring.jpa.database-platform=org.hibernate.dialect.H2Dialect
-spring.sql.init.mode=always
-spring.sql.init.schema-locations=classpath*:init/schema.sql
-spring.jpa.hibernate.ddl-auto=create
+# disable datasource
+spring.autoconfigure.exclude=org.springframework.boot.autoconfigure.jdbc.DataSourceAutoConfiguration,org.springframework.boot.autoconfigure.orm.jpa.HibernateJpaAutoConfiguration
# logging
logging.level.root=error
diff --git a/helm/dbrepo/Chart.yaml b/helm/dbrepo/Chart.yaml
index abb0c1821abb5ac68d0a92bc6eb7913cf0b5a409..89ba2eec9345f118411d76ffcfd72a655fd1e6e7 100644
--- a/helm/dbrepo/Chart.yaml
+++ b/helm/dbrepo/Chart.yaml
@@ -7,8 +7,8 @@ description: Helm Chart for installing DBRepo
sources:
- https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services
type: application
-version: "1.5.2"
-appVersion: "1.5.2"
+version: "1.5.3"
+appVersion: "1.5.3"
keywords:
- dbrepo
maintainers:
diff --git a/helm/dbrepo/README.md b/helm/dbrepo/README.md
index 759e67bf4362bb0b53b49d3d24e24db396e37ad9..8df445bfd5c024497272b41b240d9aa6651dd122 100644
--- a/helm/dbrepo/README.md
+++ b/helm/dbrepo/README.md
@@ -11,7 +11,7 @@ sample [
for your deployment and update the variables, especially `hostname`.
```bash
-helm install my-release "oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" --values ./values.yaml --version "1.5.2"
+helm install my-release "oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo" --values ./values.yaml --version "1.5.3"
```
## Prerequisites
@@ -28,7 +28,7 @@ helm install my-release "oci://registry.datalab.tuwien.ac.at/dbrepo/helm/dbrepo"
To install the chart with the release name `my-release`:
```bash
-helm install my-release "oci://oci://registry.datalab.tuwien.ac.at/dbrepo/helm" --values ./values.yaml --version "1.5.2"
+helm install my-release "oci://oci://registry.datalab.tuwien.ac.at/dbrepo/helm" --values ./values.yaml --version "1.5.3"
```
The command deploys DBRepo on the Kubernetes cluster in the default configuration. The Parameters section lists the
diff --git a/helm/dbrepo/values.yaml b/helm/dbrepo/values.yaml
index 1a122d2fe3c43f8455ca95565de0ef51946fc0fe..afc18212eda3fb40a614549a21da07c46ea60ed9 100644
--- a/helm/dbrepo/values.yaml
+++ b/helm/dbrepo/values.yaml
@@ -369,7 +369,7 @@ analyseservice:
enabled: true
image:
## @skip analyseservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/analyse-service:1.5.3
## ref: https://kubernetes.io/docs/tasks/configure-pod-container/security-context/#set-the-security-context-for-a-pod
podSecurityContext:
## @param analyseservice.podSecurityContext.enabled Enable pods' Security Context
@@ -430,7 +430,7 @@ metadataservice:
enabled: true
image:
## @skip metadataservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/metadata-service:1.5.3
## ref: https://kubernetes.io/docs/tasks/configure-pod-container/security-context/#set-the-security-context-for-a-pod
podSecurityContext:
## @param metadataservice.podSecurityContext.enabled Enable pods' Security Context
@@ -527,7 +527,7 @@ dataservice:
endpoint: http://data-service
image:
## @skip dataservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/data-service:1.5.3
## ref: https://kubernetes.io/docs/tasks/configure-pod-container/security-context/#set-the-security-context-for-a-pod
podSecurityContext:
## @param dataservice.podSecurityContext.enabled Enable pods' Security Context
@@ -613,7 +613,7 @@ searchservice:
endpoint: http://search-service
image:
## @skip searchservice.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/search-service:1.5.3
## ref: https://kubernetes.io/docs/tasks/configure-pod-container/security-context/#set-the-security-context-for-a-pod
podSecurityContext:
## @param searchservice.podSecurityContext.enabled Enable pods' Security Context
@@ -660,7 +660,7 @@ searchservice:
init:
image:
## @skip searchservice.init.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/search-service-init:1.5.3
## @param searchservice.init.resourcesPreset The container resource preset
resourcesPreset: "nano"
## @param searchservice.init.resources Set container requests and limits for different resources like CPU or memory (essential for production workloads)
@@ -721,7 +721,7 @@ storageservice:
init:
image:
## @skip storageservice.init.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/storage-service-init:1.5.3
## @param storageservice.init.resourcesPreset The container resource preset
resourcesPreset: "nano"
## @param storageservice.init.resources Set container requests and limits for different resources like CPU or memory (essential for production workloads)
@@ -827,7 +827,7 @@ ui:
enabled: true
image:
## @skip ui.image.name
- name: registry.datalab.tuwien.ac.at/dbrepo/ui:1.5.2
+ name: registry.datalab.tuwien.ac.at/dbrepo/ui:1.5.3
## ref: https://kubernetes.io/docs/tasks/configure-pod-container/security-context/#set-the-security-context-for-a-pod
podSecurityContext:
## @param ui.podSecurityContext.enabled Enable pods' Security Context
diff --git a/install.sh b/install.sh
index 12a20e9868dce4d841b4110d29ab84253e2321c1..f45f92691542b3fb6e65b9730365a7f3c810c83f 100644
--- a/install.sh
+++ b/install.sh
@@ -1,7 +1,7 @@
#!/bin/bash
# preset
-VERSION="1.5.2"
+VERSION="1.5.3"
MIN_CPU=8
MIN_RAM=4
MIN_MAP_COUNT=262144
diff --git a/lib/python/pyproject.toml b/lib/python/pyproject.toml
index e032c5edfe1310d307060efe6d178b4d4b29561c..dae17d38356c672186c4e9b066c929a39e483a61 100644
--- a/lib/python/pyproject.toml
+++ b/lib/python/pyproject.toml
@@ -1,6 +1,6 @@
[project]
name = "dbrepo"
-version = "1.5.2"
+version = "1.5.3"
description = "DBRepo Python Library"
keywords = [
"DBRepo",
diff --git a/lib/python/setup.py b/lib/python/setup.py
index 50be6c428aa5d487060590272518f7a9f30177a8..36bc076393305811348862f417ee4eef86fbfc5e 100644
--- a/lib/python/setup.py
+++ b/lib/python/setup.py
@@ -2,7 +2,7 @@
from distutils.core import setup
setup(name="dbrepo",
- version="1.5.2",
+ version="1.5.3",
description="A library for communicating with DBRepo",
url="https://www.ifs.tuwien.ac.at/infrastructures/dbrepo/1.5/",
author="Martin Weise",
diff --git a/sonar-project.properties b/sonar-project.properties
index 54228d8d4c7fd97d1c704f55cb9dc064d9bca2f8..f109f63239360a5b7d37631ad7739d835cce75cd 100644
--- a/sonar-project.properties
+++ b/sonar-project.properties
@@ -2,7 +2,7 @@
sonar.projectKey=fair-data-austria-db-repository_fda-services_a57fa043-ab99-4cdd-a721-162d9a916d77
sonar.host.url=https://s39.datalab.tuwien.ac.at
# project
-sonar.projectVersion=1.5.2
+sonar.projectVersion=1.5.3
# general
sonar.qualitygate.wait=true
sonar.projectCreation.mainBranchName=master