From 7189622739bb0ada40b96f43df748e3ff24380f0 Mon Sep 17 00:00:00 2001
From: Martin Weise <martin.weise@tuwien.ac.at>
Date: Tue, 28 Jun 2022 09:39:07 +0200
Subject: [PATCH] Remove untracked files, fixed analyse service flasgger
issues, added json headers, fixed double quotes for analyse service
---
.invenio/.gitignore | 1 +
.invenio/api_analyse/__init__.py | 30 -
.../__pycache__/__init__.cpython-36.pyc | Bin 1325 -> 0 bytes
.../__pycache__/api_client.cpython-36.pyc | Bin 17612 -> 0 bytes
.../__pycache__/configuration.cpython-36.pyc | Bin 6332 -> 0 bytes
.../__pycache__/rest.cpython-36.pyc | Bin 7491 -> 0 bytes
.invenio/api_analyse/api/__init__.py | 7 -
.../api/__pycache__/__init__.cpython-36.pyc | Bin 354 -> 0 bytes
.../analyse_endpoint_api.cpython-36.pyc | Bin 6474 -> 0 bytes
.../mdb_endpoint_api.cpython-36.pyc | Bin 4873 -> 0 bytes
.../api_analyse/api/analyse_endpoint_api.py | 231 -------
.invenio/api_analyse/api/mdb_endpoint_api.py | 132 ----
.invenio/api_analyse/api_client.py | 632 ------------------
.invenio/api_analyse/configuration.py | 244 -------
.invenio/api_analyse/models/__init__.py | 23 -
.../__pycache__/__init__.cpython-36.pyc | Bin 1063 -> 0 bytes
.../analyse_determinepk_body.cpython-36.pyc | Bin 3907 -> 0 bytes
.../__pycache__/data_type_dto.cpython-36.pyc | Bin 2472 -> 0 bytes
...rmine_data_type_request_dto.cpython-36.pyc | Bin 5406 -> 0 bytes
...mine_data_type_response_dto.cpython-36.pyc | Bin 4205 -> 0 bytes
.../determine_primary_key_dto.cpython-36.pyc | Bin 3980 -> 0 bytes
.../__pycache__/error_dto.cpython-36.pyc | Bin 3681 -> 0 bytes
.../update_column_dto.cpython-36.pyc | Bin 4444 -> 0 bytes
.../models/analyse_determinedt_body.py | 188 ------
.../models/analyse_determinepk_body.py | 136 ----
.../models/analyse_update_mdb_col_body.py | 162 -----
.invenio/api_analyse/models/data_type_dto.py | 84 ---
.../models/determine_data_type_dto.py | 189 ------
.../models/determine_data_type_request_dto.py | 189 ------
.../determine_data_type_response_dto.py | 138 ----
.../models/determine_primary_key_dto.py | 137 ----
.invenio/api_analyse/models/error_dto.py | 137 ----
.../api_analyse/models/update_column_dto.py | 165 -----
.invenio/api_analyse/rest.py | 317 ---------
.../__pycache__/__init__.cpython-36.pyc | Bin 1870 -> 0 bytes
.../__pycache__/api_client.cpython-36.pyc | Bin 17656 -> 0 bytes
.../__pycache__/configuration.cpython-36.pyc | Bin 6318 -> 0 bytes
.../__pycache__/rest.cpython-36.pyc | Bin 7514 -> 0 bytes
.../api/__pycache__/__init__.cpython-36.pyc | Bin 391 -> 0 bytes
...authentication_endpoint_api.cpython-36.pyc | Bin 7419 -> 0 bytes
.../user_endpoint_api.cpython-36.pyc | Bin 5249 -> 0 bytes
.../__pycache__/__init__.cpython-36.pyc | Bin 1564 -> 0 bytes
.../__pycache__/api_error_dto.cpython-36.pyc | Bin 6171 -> 0 bytes
.../__pycache__/column_dto.cpython-36.pyc | Bin 13402 -> 0 bytes
.../__pycache__/concept_dto.cpython-36.pyc | Bin 4397 -> 0 bytes
.../__pycache__/container_dto.cpython-36.pyc | Bin 9653 -> 0 bytes
.../__pycache__/database_dto.cpython-36.pyc | Bin 10644 -> 0 bytes
.../granted_authority_dto.cpython-36.pyc | Bin 3234 -> 0 bytes
.../__pycache__/image_date_dto.cpython-36.pyc | Bin 6506 -> 0 bytes
.../__pycache__/image_dto.cpython-36.pyc | Bin 10588 -> 0 bytes
.../image_env_item_dto.cpython-36.pyc | Bin 5246 -> 0 bytes
.../jwt_response_dto.cpython-36.pyc | Bin 6123 -> 0 bytes
.../login_request_dto.cpython-36.pyc | Bin 3919 -> 0 bytes
.../signup_request_dto.cpython-36.pyc | Bin 4591 -> 0 bytes
.../__pycache__/table_dto.cpython-36.pyc | Bin 10657 -> 0 bytes
.../__pycache__/user_dto.cpython-36.pyc | Bin 9218 -> 0 bytes
.../__pycache__/__init__.cpython-36.pyc | Bin 2012 -> 0 bytes
.../__pycache__/api_client.cpython-36.pyc | Bin 17624 -> 0 bytes
.../__pycache__/configuration.cpython-36.pyc | Bin 6296 -> 0 bytes
.../__pycache__/rest.cpython-36.pyc | Bin 7497 -> 0 bytes
.../api/__pycache__/__init__.cpython-36.pyc | Bin 368 -> 0 bytes
.../container_endpoint_api.cpython-36.pyc | Bin 11907 -> 0 bytes
.../image_endpoint_api.cpython-36.pyc | Bin 11660 -> 0 bytes
.../__pycache__/__init__.cpython-36.pyc | Bin 1734 -> 0 bytes
.../__pycache__/api_error_dto.cpython-36.pyc | Bin 6154 -> 0 bytes
.../__pycache__/column_dto.cpython-36.pyc | Bin 13385 -> 0 bytes
.../__pycache__/concept_dto.cpython-36.pyc | Bin 4380 -> 0 bytes
.../container_brief_dto.cpython-36.pyc | Bin 5869 -> 0 bytes
.../container_change_dto.cpython-36.pyc | Bin 3427 -> 0 bytes
...ontainer_create_request_dto.cpython-36.pyc | Bin 4764 -> 0 bytes
.../__pycache__/container_dto.cpython-36.pyc | Bin 9636 -> 0 bytes
.../__pycache__/database_dto.cpython-36.pyc | Bin 10627 -> 0 bytes
.../granted_authority_dto.cpython-36.pyc | Bin 3217 -> 0 bytes
.../image_brief_dto.cpython-36.pyc | Bin 5017 -> 0 bytes
.../image_change_dto.cpython-36.pyc | Bin 6574 -> 0 bytes
.../image_create_dto.cpython-36.pyc | Bin 8596 -> 0 bytes
.../__pycache__/image_date_dto.cpython-36.pyc | Bin 6489 -> 0 bytes
.../__pycache__/image_dto.cpython-36.pyc | Bin 10571 -> 0 bytes
.../image_env_item_dto.cpython-36.pyc | Bin 5229 -> 0 bytes
.../__pycache__/table_dto.cpython-36.pyc | Bin 10640 -> 0 bytes
.../__pycache__/user_dto.cpython-36.pyc | Bin 9201 -> 0 bytes
.../__pycache__/__init__.cpython-36.pyc | Bin 1685 -> 0 bytes
.../__pycache__/api_client.cpython-36.pyc | Bin 17618 -> 0 bytes
.../__pycache__/configuration.cpython-36.pyc | Bin 6292 -> 0 bytes
.../__pycache__/rest.cpython-36.pyc | Bin 7494 -> 0 bytes
.../api/__pycache__/__init__.cpython-36.pyc | Bin 306 -> 0 bytes
...ainer_database_endpoint_api.cpython-36.pyc | Bin 13229 -> 0 bytes
.../__pycache__/__init__.cpython-36.pyc | Bin 1470 -> 0 bytes
.../__pycache__/api_error_dto.cpython-36.pyc | Bin 6151 -> 0 bytes
.../__pycache__/column_dto.cpython-36.pyc | Bin 13382 -> 0 bytes
.../__pycache__/concept_dto.cpython-36.pyc | Bin 4377 -> 0 bytes
.../__pycache__/container_dto.cpython-36.pyc | Bin 9633 -> 0 bytes
.../database_brief_dto.cpython-36.pyc | Bin 5827 -> 0 bytes
.../database_create_dto.cpython-36.pyc | Bin 4631 -> 0 bytes
.../__pycache__/database_dto.cpython-36.pyc | Bin 10624 -> 0 bytes
.../database_modify_dto.cpython-36.pyc | Bin 5893 -> 0 bytes
.../granted_authority_dto.cpython-36.pyc | Bin 3214 -> 0 bytes
.../__pycache__/image_date_dto.cpython-36.pyc | Bin 6486 -> 0 bytes
.../__pycache__/image_dto.cpython-36.pyc | Bin 10568 -> 0 bytes
.../image_env_item_dto.cpython-36.pyc | Bin 5226 -> 0 bytes
.../__pycache__/table_dto.cpython-36.pyc | Bin 10637 -> 0 bytes
.../__pycache__/user_dto.cpython-36.pyc | Bin 9198 -> 0 bytes
.invenio/dev.py | 36 +-
.invenio/requirements.txt | 3 +-
fda-analyse-service/.gitignore | 28 +-
fda-analyse-service/Dockerfile | 2 +-
fda-analyse-service/app.py | 42 +-
fda-analyse-service/requirements.txt | 16 +-
108 files changed, 83 insertions(+), 3186 deletions(-)
create mode 100644 .invenio/.gitignore
delete mode 100644 .invenio/api_analyse/__init__.py
delete mode 100644 .invenio/api_analyse/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/__pycache__/api_client.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/__pycache__/configuration.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/__pycache__/rest.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/api/__init__.py
delete mode 100644 .invenio/api_analyse/api/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/api/__pycache__/analyse_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/api/__pycache__/mdb_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/api/analyse_endpoint_api.py
delete mode 100644 .invenio/api_analyse/api/mdb_endpoint_api.py
delete mode 100644 .invenio/api_analyse/api_client.py
delete mode 100644 .invenio/api_analyse/configuration.py
delete mode 100644 .invenio/api_analyse/models/__init__.py
delete mode 100644 .invenio/api_analyse/models/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/analyse_determinepk_body.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/data_type_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/determine_data_type_request_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/determine_data_type_response_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/determine_primary_key_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/error_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/__pycache__/update_column_dto.cpython-36.pyc
delete mode 100644 .invenio/api_analyse/models/analyse_determinedt_body.py
delete mode 100644 .invenio/api_analyse/models/analyse_determinepk_body.py
delete mode 100644 .invenio/api_analyse/models/analyse_update_mdb_col_body.py
delete mode 100644 .invenio/api_analyse/models/data_type_dto.py
delete mode 100644 .invenio/api_analyse/models/determine_data_type_dto.py
delete mode 100644 .invenio/api_analyse/models/determine_data_type_request_dto.py
delete mode 100644 .invenio/api_analyse/models/determine_data_type_response_dto.py
delete mode 100644 .invenio/api_analyse/models/determine_primary_key_dto.py
delete mode 100644 .invenio/api_analyse/models/error_dto.py
delete mode 100644 .invenio/api_analyse/models/update_column_dto.py
delete mode 100644 .invenio/api_analyse/rest.py
delete mode 100644 .invenio/api_authentication/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/__pycache__/api_client.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/__pycache__/configuration.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/__pycache__/rest.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/api/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/api/__pycache__/authentication_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/api/__pycache__/user_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/api_error_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/column_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/concept_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/container_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/database_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/granted_authority_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/image_date_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/image_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/image_env_item_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/jwt_response_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/login_request_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/signup_request_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/table_dto.cpython-36.pyc
delete mode 100644 .invenio/api_authentication/models/__pycache__/user_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_container/__pycache__/api_client.cpython-36.pyc
delete mode 100644 .invenio/api_container/__pycache__/configuration.cpython-36.pyc
delete mode 100644 .invenio/api_container/__pycache__/rest.cpython-36.pyc
delete mode 100644 .invenio/api_container/api/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_container/api/__pycache__/container_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_container/api/__pycache__/image_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/api_error_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/column_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/concept_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/container_brief_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/container_change_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/container_create_request_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/container_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/database_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/granted_authority_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_brief_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_change_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_create_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_date_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/image_env_item_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/table_dto.cpython-36.pyc
delete mode 100644 .invenio/api_container/models/__pycache__/user_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_database/__pycache__/api_client.cpython-36.pyc
delete mode 100644 .invenio/api_database/__pycache__/configuration.cpython-36.pyc
delete mode 100644 .invenio/api_database/__pycache__/rest.cpython-36.pyc
delete mode 100644 .invenio/api_database/api/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_database/api/__pycache__/container_database_endpoint_api.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/__init__.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/api_error_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/column_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/concept_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/container_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/database_brief_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/database_create_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/database_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/database_modify_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/granted_authority_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/image_date_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/image_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/image_env_item_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/table_dto.cpython-36.pyc
delete mode 100644 .invenio/api_database/models/__pycache__/user_dto.cpython-36.pyc
diff --git a/.invenio/.gitignore b/.invenio/.gitignore
new file mode 100644
index 0000000000..ed8ebf583f
--- /dev/null
+++ b/.invenio/.gitignore
@@ -0,0 +1 @@
+__pycache__
\ No newline at end of file
diff --git a/.invenio/api_analyse/__init__.py b/.invenio/api_analyse/__init__.py
deleted file mode 100644
index 7384e3f21e..0000000000
--- a/.invenio/api_analyse/__init__.py
+++ /dev/null
@@ -1,30 +0,0 @@
-# coding: utf-8
-
-# flake8: noqa
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-# import apis into sdk package
-from api_analyse.api.analyse_endpoint_api import AnalyseEndpointApi
-from api_analyse.api.mdb_endpoint_api import MdbEndpointApi
-# import ApiClient
-from api_analyse.api_client import ApiClient
-from api_analyse.configuration import Configuration
-# import models into sdk package
-from api_analyse.models.analyse_determinepk_body import AnalyseDeterminepkBody
-from api_analyse.models.data_type_dto import DataTypeDto
-from api_analyse.models.determine_data_type_request_dto import DetermineDataTypeRequestDto
-from api_analyse.models.determine_data_type_response_dto import DetermineDataTypeResponseDto
-from api_analyse.models.determine_primary_key_dto import DeterminePrimaryKeyDto
-from api_analyse.models.error_dto import ErrorDto
-from api_analyse.models.update_column_dto import UpdateColumnDto
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diff --git a/.invenio/api_analyse/api/__init__.py b/.invenio/api_analyse/api/__init__.py
deleted file mode 100644
index a69933e19a..0000000000
--- a/.invenio/api_analyse/api/__init__.py
+++ /dev/null
@@ -1,7 +0,0 @@
-from __future__ import absolute_import
-
-# flake8: noqa
-
-# import apis into api package
-from api_analyse.api.analyse_endpoint_api import AnalyseEndpointApi
-from api_analyse.api.mdb_endpoint_api import MdbEndpointApi
diff --git a/.invenio/api_analyse/api/__pycache__/__init__.cpython-36.pyc b/.invenio/api_analyse/api/__pycache__/__init__.cpython-36.pyc
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diff --git a/.invenio/api_analyse/api/analyse_endpoint_api.py b/.invenio/api_analyse/api/analyse_endpoint_api.py
deleted file mode 100644
index a7700e2699..0000000000
--- a/.invenio/api_analyse/api/analyse_endpoint_api.py
+++ /dev/null
@@ -1,231 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-import re # noqa: F401
-
-# python 2 and python 3 compatibility library
-import six
-
-from api_analyse.api_client import ApiClient
-
-
-class AnalyseEndpointApi(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- Ref: https://github.com/swagger-api/swagger-codegen
- """
-
- def __init__(self, api_client=None):
- if api_client is None:
- api_client = ApiClient()
- self.api_client = api_client
-
- def api_analyse_determinedt_post(self, body, **kwargs): # noqa: E501
- """Determine datatypes # noqa: E501
-
- This is a simple API which returns the datatypes of a (path) csv file # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_determinedt_post(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param DetermineDataTypeRequestDto body: (required)
- :return: list[DetermineDataTypeResponseDto]
- If the method is called asynchronously,
- returns the request thread.
- """
- kwargs['_return_http_data_only'] = True
- if kwargs.get('async_req'):
- return self.api_analyse_determinedt_post_with_http_info(body, **kwargs) # noqa: E501
- else:
- (data) = self.api_analyse_determinedt_post_with_http_info(body, **kwargs) # noqa: E501
- return data
-
- def api_analyse_determinedt_post_with_http_info(self, body, **kwargs): # noqa: E501
- """Determine datatypes # noqa: E501
-
- This is a simple API which returns the datatypes of a (path) csv file # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_determinedt_post_with_http_info(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param DetermineDataTypeRequestDto body: (required)
- :return: list[DetermineDataTypeResponseDto]
- If the method is called asynchronously,
- returns the request thread.
- """
-
- all_params = ['body'] # noqa: E501
- all_params.append('async_req')
- all_params.append('_return_http_data_only')
- all_params.append('_preload_content')
- all_params.append('_request_timeout')
-
- params = locals()
- for key, val in six.iteritems(params['kwargs']):
- if key not in all_params:
- raise TypeError(
- "Got an unexpected keyword argument '%s'"
- " to method api_analyse_determinedt_post" % key
- )
- params[key] = val
- del params['kwargs']
- # verify the required parameter 'body' is set
- if ('body' not in params or
- params['body'] is None):
- raise ValueError("Missing the required parameter `body` when calling `api_analyse_determinedt_post`") # noqa: E501
-
- collection_formats = {}
-
- path_params = {}
-
- query_params = []
-
- header_params = {}
-
- form_params = []
- local_var_files = {}
-
- body_params = None
- if 'body' in params:
- body_params = params['body']
- # HTTP header `Accept`
- header_params['Accept'] = self.api_client.select_header_accept(
- ['*/*']) # noqa: E501
-
- # HTTP header `Content-Type`
- header_params['Content-Type'] = self.api_client.select_header_content_type( # noqa: E501
- ['*/*']) # noqa: E501
-
- # Authentication setting
- auth_settings = [] # noqa: E501
-
- return self.api_client.call_api(
- '/api/analyse/determinedt', 'POST',
- path_params,
- query_params,
- header_params,
- body=body_params,
- post_params=form_params,
- files=local_var_files,
- response_type='list[DetermineDataTypeResponseDto]', # noqa: E501
- auth_settings=auth_settings,
- async_req=params.get('async_req'),
- _return_http_data_only=params.get('_return_http_data_only'),
- _preload_content=params.get('_preload_content', True),
- _request_timeout=params.get('_request_timeout'),
- collection_formats=collection_formats)
-
- def api_analyse_determinepk_post(self, body, **kwargs): # noqa: E501
- """Determine primary keys # noqa: E501
-
- This is a simple API which returns the primary keys + ranking of a (path) csv file # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_determinepk_post(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param AnalyseDeterminepkBody body: (required)
- :return: DeterminePrimaryKeyDto
- If the method is called asynchronously,
- returns the request thread.
- """
- kwargs['_return_http_data_only'] = True
- if kwargs.get('async_req'):
- return self.api_analyse_determinepk_post_with_http_info(body, **kwargs) # noqa: E501
- else:
- (data) = self.api_analyse_determinepk_post_with_http_info(body, **kwargs) # noqa: E501
- return data
-
- def api_analyse_determinepk_post_with_http_info(self, body, **kwargs): # noqa: E501
- """Determine primary keys # noqa: E501
-
- This is a simple API which returns the primary keys + ranking of a (path) csv file # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_determinepk_post_with_http_info(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param AnalyseDeterminepkBody body: (required)
- :return: DeterminePrimaryKeyDto
- If the method is called asynchronously,
- returns the request thread.
- """
-
- all_params = ['body'] # noqa: E501
- all_params.append('async_req')
- all_params.append('_return_http_data_only')
- all_params.append('_preload_content')
- all_params.append('_request_timeout')
-
- params = locals()
- for key, val in six.iteritems(params['kwargs']):
- if key not in all_params:
- raise TypeError(
- "Got an unexpected keyword argument '%s'"
- " to method api_analyse_determinepk_post" % key
- )
- params[key] = val
- del params['kwargs']
- # verify the required parameter 'body' is set
- if ('body' not in params or
- params['body'] is None):
- raise ValueError("Missing the required parameter `body` when calling `api_analyse_determinepk_post`") # noqa: E501
-
- collection_formats = {}
-
- path_params = {}
-
- query_params = []
-
- header_params = {}
-
- form_params = []
- local_var_files = {}
-
- body_params = None
- if 'body' in params:
- body_params = params['body']
- # HTTP header `Accept`
- header_params['Accept'] = self.api_client.select_header_accept(
- ['*/*']) # noqa: E501
-
- # HTTP header `Content-Type`
- header_params['Content-Type'] = self.api_client.select_header_content_type( # noqa: E501
- ['application/json']) # noqa: E501
-
- # Authentication setting
- auth_settings = [] # noqa: E501
-
- return self.api_client.call_api(
- '/api/analyse/determinepk', 'POST',
- path_params,
- query_params,
- header_params,
- body=body_params,
- post_params=form_params,
- files=local_var_files,
- response_type='DeterminePrimaryKeyDto', # noqa: E501
- auth_settings=auth_settings,
- async_req=params.get('async_req'),
- _return_http_data_only=params.get('_return_http_data_only'),
- _preload_content=params.get('_preload_content', True),
- _request_timeout=params.get('_request_timeout'),
- collection_formats=collection_formats)
diff --git a/.invenio/api_analyse/api/mdb_endpoint_api.py b/.invenio/api_analyse/api/mdb_endpoint_api.py
deleted file mode 100644
index df866e8a27..0000000000
--- a/.invenio/api_analyse/api/mdb_endpoint_api.py
+++ /dev/null
@@ -1,132 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-import re # noqa: F401
-
-# python 2 and python 3 compatibility library
-import six
-
-from api_analyse.api_client import ApiClient
-
-
-class MdbEndpointApi(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- Ref: https://github.com/swagger-api/swagger-codegen
- """
-
- def __init__(self, api_client=None):
- if api_client is None:
- api_client = ApiClient()
- self.api_client = api_client
-
- def api_analyse_update_mdb_col_post(self, body, **kwargs): # noqa: E501
- """Update entity mdb_columns from metadatabase # noqa: E501
-
- Updates entity mdb_columns and mdb_columns_num, mdb_columns_nom and mdb_columns_cat in metadatabase # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_update_mdb_col_post(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param UpdateColumnDto body: Updates entity mdb_columns attributes (datatype, ordinal_position, is_nullable) and automatically updates mdb_columns_nom (attribute max_length), mdb_columns_num (min, max, mean, sd, histogram) and mdb_columns_cat (num_cat, cat_array). The attribute 'histogram' describes a equi-width histogram with a fix number of 10 buckets. The last value in this numeric array is the width of one bucket. The attribute cat_array contains an array with the names of the categories. (required)
- :return: UpdateColumnDto
- If the method is called asynchronously,
- returns the request thread.
- """
- kwargs['_return_http_data_only'] = True
- if kwargs.get('async_req'):
- return self.api_analyse_update_mdb_col_post_with_http_info(body, **kwargs) # noqa: E501
- else:
- (data) = self.api_analyse_update_mdb_col_post_with_http_info(body, **kwargs) # noqa: E501
- return data
-
- def api_analyse_update_mdb_col_post_with_http_info(self, body, **kwargs): # noqa: E501
- """Update entity mdb_columns from metadatabase # noqa: E501
-
- Updates entity mdb_columns and mdb_columns_num, mdb_columns_nom and mdb_columns_cat in metadatabase # noqa: E501
- This method makes a synchronous HTTP request by default. To make an
- asynchronous HTTP request, please pass async_req=True
- >>> thread = api.api_analyse_update_mdb_col_post_with_http_info(body, async_req=True)
- >>> result = thread.get()
-
- :param async_req bool
- :param UpdateColumnDto body: Updates entity mdb_columns attributes (datatype, ordinal_position, is_nullable) and automatically updates mdb_columns_nom (attribute max_length), mdb_columns_num (min, max, mean, sd, histogram) and mdb_columns_cat (num_cat, cat_array). The attribute 'histogram' describes a equi-width histogram with a fix number of 10 buckets. The last value in this numeric array is the width of one bucket. The attribute cat_array contains an array with the names of the categories. (required)
- :return: UpdateColumnDto
- If the method is called asynchronously,
- returns the request thread.
- """
-
- all_params = ['body'] # noqa: E501
- all_params.append('async_req')
- all_params.append('_return_http_data_only')
- all_params.append('_preload_content')
- all_params.append('_request_timeout')
-
- params = locals()
- for key, val in six.iteritems(params['kwargs']):
- if key not in all_params:
- raise TypeError(
- "Got an unexpected keyword argument '%s'"
- " to method api_analyse_update_mdb_col_post" % key
- )
- params[key] = val
- del params['kwargs']
- # verify the required parameter 'body' is set
- if ('body' not in params or
- params['body'] is None):
- raise ValueError("Missing the required parameter `body` when calling `api_analyse_update_mdb_col_post`") # noqa: E501
-
- collection_formats = {}
-
- path_params = {}
-
- query_params = []
-
- header_params = {}
-
- form_params = []
- local_var_files = {}
-
- body_params = None
- if 'body' in params:
- body_params = params['body']
- # HTTP header `Accept`
- header_params['Accept'] = self.api_client.select_header_accept(
- ['*/*']) # noqa: E501
-
- # HTTP header `Content-Type`
- header_params['Content-Type'] = self.api_client.select_header_content_type( # noqa: E501
- ['*/*']) # noqa: E501
-
- # Authentication setting
- auth_settings = [] # noqa: E501
-
- return self.api_client.call_api(
- '/api/analyse/update_mdb_col', 'POST',
- path_params,
- query_params,
- header_params,
- body=body_params,
- post_params=form_params,
- files=local_var_files,
- response_type='UpdateColumnDto', # noqa: E501
- auth_settings=auth_settings,
- async_req=params.get('async_req'),
- _return_http_data_only=params.get('_return_http_data_only'),
- _preload_content=params.get('_preload_content', True),
- _request_timeout=params.get('_request_timeout'),
- collection_formats=collection_formats)
diff --git a/.invenio/api_analyse/api_client.py b/.invenio/api_analyse/api_client.py
deleted file mode 100644
index 6ce1186c08..0000000000
--- a/.invenio/api_analyse/api_client.py
+++ /dev/null
@@ -1,632 +0,0 @@
-# coding: utf-8
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-from __future__ import absolute_import
-
-import datetime
-import json
-import mimetypes
-from multiprocessing.pool import ThreadPool
-import os
-import re
-import tempfile
-
-# python 2 and python 3 compatibility library
-import six
-from six.moves.urllib.parse import quote
-
-from api_analyse.configuration import Configuration
-import api_analyse.models
-from api_analyse import rest
-
-
-class ApiClient(object):
- """Generic API client for Swagger client library builds.
-
- Swagger generic API client. This client handles the client-
- server communication, and is invariant across implementations. Specifics of
- the methods and models for each application are generated from the Swagger
- templates.
-
- NOTE: This class is auto generated by the swagger code generator program.
- Ref: https://github.com/swagger-api/swagger-codegen
- Do not edit the class manually.
-
- :param configuration: .Configuration object for this client
- :param header_name: a header to pass when making calls to the API.
- :param header_value: a header value to pass when making calls to
- the API.
- :param cookie: a cookie to include in the header when making calls
- to the API
- """
-
- PRIMITIVE_TYPES = (float, bool, bytes, six.text_type) + six.integer_types
- NATIVE_TYPES_MAPPING = {
- 'int': int,
- 'long': int if six.PY3 else long, # noqa: F821
- 'float': float,
- 'str': str,
- 'bool': bool,
- 'date': datetime.date,
- 'datetime': datetime.datetime,
- 'object': object,
- }
-
- def __init__(self, configuration=None, header_name=None, header_value=None,
- cookie=None):
- if configuration is None:
- configuration = Configuration()
- self.configuration = configuration
-
- self.pool = ThreadPool()
- self.rest_client = rest.RESTClientObject(configuration)
- self.default_headers = {}
- if header_name is not None:
- self.default_headers[header_name] = header_value
- self.cookie = cookie
- # Set default User-Agent.
- self.user_agent = 'Swagger-Codegen/1.0.0/python'
-
- def __del__(self):
- self.pool.close()
- self.pool.join()
-
- @property
- def user_agent(self):
- """User agent for this API client"""
- return self.default_headers['User-Agent']
-
- @user_agent.setter
- def user_agent(self, value):
- self.default_headers['User-Agent'] = value
-
- def set_default_header(self, header_name, header_value):
- self.default_headers[header_name] = header_value
-
- def __call_api(
- self, resource_path, method, path_params=None,
- query_params=None, header_params=None, body=None, post_params=None,
- files=None, response_type=None, auth_settings=None,
- _return_http_data_only=None, collection_formats=None,
- _preload_content=True, _request_timeout=None):
-
- config = self.configuration
-
- # header parameters
- header_params = header_params or {}
- header_params.update(self.default_headers)
- if self.cookie:
- header_params['Cookie'] = self.cookie
- if header_params:
- header_params = self.sanitize_for_serialization(header_params)
- header_params = dict(self.parameters_to_tuples(header_params,
- collection_formats))
-
- # path parameters
- if path_params:
- path_params = self.sanitize_for_serialization(path_params)
- path_params = self.parameters_to_tuples(path_params,
- collection_formats)
- for k, v in path_params:
- # specified safe chars, encode everything
- resource_path = resource_path.replace(
- '{%s}' % k,
- quote(str(v), safe=config.safe_chars_for_path_param)
- )
-
- # query parameters
- if query_params:
- query_params = self.sanitize_for_serialization(query_params)
- query_params = self.parameters_to_tuples(query_params,
- collection_formats)
-
- # post parameters
- if post_params or files:
- post_params = self.prepare_post_parameters(post_params, files)
- post_params = self.sanitize_for_serialization(post_params)
- post_params = self.parameters_to_tuples(post_params,
- collection_formats)
-
- # auth setting
- self.update_params_for_auth(header_params, query_params, auth_settings)
-
- # body
- if body:
- body = self.sanitize_for_serialization(body)
-
- # request url
- url = self.configuration.host + resource_path
-
- # perform request and return response
- response_data = self.request(
- method, url, query_params=query_params, headers=header_params,
- post_params=post_params, body=body,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout)
-
- self.last_response = response_data
-
- return_data = response_data
- if _preload_content:
- # deserialize response data
- if response_type:
- return_data = self.deserialize(response_data, response_type)
- else:
- return_data = None
-
- if _return_http_data_only:
- return (return_data)
- else:
- return (return_data, response_data.status,
- response_data.getheaders())
-
- def sanitize_for_serialization(self, obj):
- """Builds a JSON POST object.
-
- If obj is None, return None.
- If obj is str, int, long, float, bool, return directly.
- If obj is datetime.datetime, datetime.date
- convert to string in iso8601 format.
- If obj is list, sanitize each element in the list.
- If obj is dict, return the dict.
- If obj is swagger model, return the properties dict.
-
- :param obj: The data to serialize.
- :return: The serialized form of data.
- """
- if obj is None:
- return None
- elif isinstance(obj, self.PRIMITIVE_TYPES):
- return obj
- elif isinstance(obj, list):
- return [self.sanitize_for_serialization(sub_obj)
- for sub_obj in obj]
- elif isinstance(obj, tuple):
- return tuple(self.sanitize_for_serialization(sub_obj)
- for sub_obj in obj)
- elif isinstance(obj, (datetime.datetime, datetime.date)):
- return obj.isoformat()
-
- if isinstance(obj, dict):
- obj_dict = obj
- else:
- # Convert model obj to dict except
- # attributes `swagger_types`, `attribute_map`
- # and attributes which value is not None.
- # Convert attribute name to json key in
- # model definition for request.
- obj_dict = {obj.attribute_map[attr]: getattr(obj, attr)
- for attr, _ in six.iteritems(obj.swagger_types)
- if getattr(obj, attr) is not None}
-
- return {key: self.sanitize_for_serialization(val)
- for key, val in six.iteritems(obj_dict)}
-
- def deserialize(self, response, response_type):
- """Deserializes response into an object.
-
- :param response: RESTResponse object to be deserialized.
- :param response_type: class literal for
- deserialized object, or string of class name.
-
- :return: deserialized object.
- """
- # handle file downloading
- # save response body into a tmp file and return the instance
- if response_type == "file":
- return self.__deserialize_file(response)
-
- # fetch data from response object
- try:
- data = json.loads(response.data)
- except ValueError:
- data = response.data
-
- return self.__deserialize(data, response_type)
-
- def __deserialize(self, data, klass):
- """Deserializes dict, list, str into an object.
-
- :param data: dict, list or str.
- :param klass: class literal, or string of class name.
-
- :return: object.
- """
- if data is None:
- return None
-
- if type(klass) == str:
- if klass.startswith('list['):
- sub_kls = re.match(r'list\[(.*)\]', klass).group(1)
- return [self.__deserialize(sub_data, sub_kls)
- for sub_data in data]
-
- if klass.startswith('dict('):
- sub_kls = re.match(r'dict\(([^,]*), (.*)\)', klass).group(2)
- return {k: self.__deserialize(v, sub_kls)
- for k, v in six.iteritems(data)}
-
- # convert str to class
- if klass in self.NATIVE_TYPES_MAPPING:
- klass = self.NATIVE_TYPES_MAPPING[klass]
- else:
- klass = getattr(api_analyse.models, klass)
-
- if klass in self.PRIMITIVE_TYPES:
- return self.__deserialize_primitive(data, klass)
- elif klass == object:
- return self.__deserialize_object(data)
- elif klass == datetime.date:
- return self.__deserialize_date(data)
- elif klass == datetime.datetime:
- return self.__deserialize_datatime(data)
- else:
- return self.__deserialize_model(data, klass)
-
- def call_api(self, resource_path, method,
- path_params=None, query_params=None, header_params=None,
- body=None, post_params=None, files=None,
- response_type=None, auth_settings=None, async_req=None,
- _return_http_data_only=None, collection_formats=None,
- _preload_content=True, _request_timeout=None):
- """Makes the HTTP request (synchronous) and returns deserialized data.
-
- To make an async request, set the async_req parameter.
-
- :param resource_path: Path to method endpoint.
- :param method: Method to call.
- :param path_params: Path parameters in the url.
- :param query_params: Query parameters in the url.
- :param header_params: Header parameters to be
- placed in the request header.
- :param body: Request body.
- :param post_params dict: Request post form parameters,
- for `application/x-www-form-urlencoded`, `multipart/form-data`.
- :param auth_settings list: Auth Settings names for the request.
- :param response: Response data type.
- :param files dict: key -> filename, value -> filepath,
- for `multipart/form-data`.
- :param async_req bool: execute request asynchronously
- :param _return_http_data_only: response data without head status code
- and headers
- :param collection_formats: dict of collection formats for path, query,
- header, and post parameters.
- :param _preload_content: if False, the urllib3.HTTPResponse object will
- be returned without reading/decoding response
- data. Default is True.
- :param _request_timeout: timeout setting for this request. If one
- number provided, it will be total request
- timeout. It can also be a pair (tuple) of
- (connection, read) timeouts.
- :return:
- If async_req parameter is True,
- the request will be called asynchronously.
- The method will return the request thread.
- If parameter async_req is False or missing,
- then the method will return the response directly.
- """
- if not async_req:
- return self.__call_api(resource_path, method,
- path_params, query_params, header_params,
- body, post_params, files,
- response_type, auth_settings,
- _return_http_data_only, collection_formats,
- _preload_content, _request_timeout)
- else:
- thread = self.pool.apply_async(self.__call_api, (resource_path,
- method, path_params, query_params,
- header_params, body,
- post_params, files,
- response_type, auth_settings,
- _return_http_data_only,
- collection_formats,
- _preload_content, _request_timeout))
- return thread
-
- def request(self, method, url, query_params=None, headers=None,
- post_params=None, body=None, _preload_content=True,
- _request_timeout=None):
- """Makes the HTTP request using RESTClient."""
- if method == "GET":
- return self.rest_client.GET(url,
- query_params=query_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- headers=headers)
- elif method == "HEAD":
- return self.rest_client.HEAD(url,
- query_params=query_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- headers=headers)
- elif method == "OPTIONS":
- return self.rest_client.OPTIONS(url,
- query_params=query_params,
- headers=headers,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
- elif method == "POST":
- return self.rest_client.POST(url,
- query_params=query_params,
- headers=headers,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
- elif method == "PUT":
- return self.rest_client.PUT(url,
- query_params=query_params,
- headers=headers,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
- elif method == "PATCH":
- return self.rest_client.PATCH(url,
- query_params=query_params,
- headers=headers,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
- elif method == "DELETE":
- return self.rest_client.DELETE(url,
- query_params=query_params,
- headers=headers,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
- else:
- raise ValueError(
- "http method must be `GET`, `HEAD`, `OPTIONS`,"
- " `POST`, `PATCH`, `PUT` or `DELETE`."
- )
-
- def parameters_to_tuples(self, params, collection_formats):
- """Get parameters as list of tuples, formatting collections.
-
- :param params: Parameters as dict or list of two-tuples
- :param dict collection_formats: Parameter collection formats
- :return: Parameters as list of tuples, collections formatted
- """
- new_params = []
- if collection_formats is None:
- collection_formats = {}
- for k, v in six.iteritems(params) if isinstance(params, dict) else params: # noqa: E501
- if k in collection_formats:
- collection_format = collection_formats[k]
- if collection_format == 'multi':
- new_params.extend((k, value) for value in v)
- else:
- if collection_format == 'ssv':
- delimiter = ' '
- elif collection_format == 'tsv':
- delimiter = '\t'
- elif collection_format == 'pipes':
- delimiter = '|'
- else: # csv is the default
- delimiter = ','
- new_params.append(
- (k, delimiter.join(str(value) for value in v)))
- else:
- new_params.append((k, v))
- return new_params
-
- def prepare_post_parameters(self, post_params=None, files=None):
- """Builds form parameters.
-
- :param post_params: Normal form parameters.
- :param files: File parameters.
- :return: Form parameters with files.
- """
- params = []
-
- if post_params:
- params = post_params
-
- if files:
- for k, v in six.iteritems(files):
- if not v:
- continue
- file_names = v if type(v) is list else [v]
- for n in file_names:
- with open(n, 'rb') as f:
- filename = os.path.basename(f.name)
- filedata = f.read()
- mimetype = (mimetypes.guess_type(filename)[0] or
- 'application/octet-stream')
- params.append(
- tuple([k, tuple([filename, filedata, mimetype])]))
-
- return params
-
- def select_header_accept(self, accepts):
- """Returns `Accept` based on an array of accepts provided.
-
- :param accepts: List of headers.
- :return: Accept (e.g. application/json).
- """
- if not accepts:
- return
-
- accepts = [x.lower() for x in accepts]
-
- if 'application/json' in accepts:
- return 'application/json'
- else:
- return ', '.join(accepts)
-
- def select_header_content_type(self, content_types):
- """Returns `Content-Type` based on an array of content_types provided.
-
- :param content_types: List of content-types.
- :return: Content-Type (e.g. application/json).
- """
- if not content_types:
- return 'application/json'
-
- content_types = [x.lower() for x in content_types]
-
- if 'application/json' in content_types or '*/*' in content_types:
- return 'application/json'
- else:
- return content_types[0]
-
- def update_params_for_auth(self, headers, querys, auth_settings):
- """Updates header and query params based on authentication setting.
-
- :param headers: Header parameters dict to be updated.
- :param querys: Query parameters tuple list to be updated.
- :param auth_settings: Authentication setting identifiers list.
- """
- if not auth_settings:
- return
-
- for auth in auth_settings:
- auth_setting = self.configuration.auth_settings().get(auth)
- if auth_setting:
- if not auth_setting['value']:
- continue
- elif auth_setting['in'] == 'header':
- headers[auth_setting['key']] = auth_setting['value']
- elif auth_setting['in'] == 'query':
- querys.append((auth_setting['key'], auth_setting['value']))
- else:
- raise ValueError(
- 'Authentication token must be in `query` or `header`'
- )
-
- def __deserialize_file(self, response):
- """Deserializes body to file
-
- Saves response body into a file in a temporary folder,
- using the filename from the `Content-Disposition` header if provided.
-
- :param response: RESTResponse.
- :return: file path.
- """
- fd, path = tempfile.mkstemp(dir=self.configuration.temp_folder_path)
- os.close(fd)
- os.remove(path)
-
- content_disposition = response.getheader("Content-Disposition")
- if content_disposition:
- filename = re.search(r'filename=[\'"]?([^\'"\s]+)[\'"]?',
- content_disposition).group(1)
- path = os.path.join(os.path.dirname(path), filename)
- response_data = response.data
- with open(path, "wb") as f:
- if isinstance(response_data, str):
- # change str to bytes so we can write it
- response_data = response_data.encode('utf-8')
- f.write(response_data)
- else:
- f.write(response_data)
- return path
-
- def __deserialize_primitive(self, data, klass):
- """Deserializes string to primitive type.
-
- :param data: str.
- :param klass: class literal.
-
- :return: int, long, float, str, bool.
- """
- try:
- return klass(data)
- except UnicodeEncodeError:
- return six.text_type(data)
- except TypeError:
- return data
-
- def __deserialize_object(self, value):
- """Return a original value.
-
- :return: object.
- """
- return value
-
- def __deserialize_date(self, string):
- """Deserializes string to date.
-
- :param string: str.
- :return: date.
- """
- try:
- from dateutil.parser import parse
- return parse(string).date()
- except ImportError:
- return string
- except ValueError:
- raise rest.ApiException(
- status=0,
- reason="Failed to parse `{0}` as date object".format(string)
- )
-
- def __deserialize_datatime(self, string):
- """Deserializes string to datetime.
-
- The string should be in iso8601 datetime format.
-
- :param string: str.
- :return: datetime.
- """
- try:
- from dateutil.parser import parse
- return parse(string)
- except ImportError:
- return string
- except ValueError:
- raise rest.ApiException(
- status=0,
- reason=(
- "Failed to parse `{0}` as datetime object"
- .format(string)
- )
- )
-
- def __hasattr(self, object, name):
- return name in object.__class__.__dict__
-
- def __deserialize_model(self, data, klass):
- """Deserializes list or dict to model.
-
- :param data: dict, list.
- :param klass: class literal.
- :return: model object.
- """
-
- if not klass.swagger_types and not self.__hasattr(klass, 'get_real_child_model'):
- return data
-
- kwargs = {}
- if klass.swagger_types is not None:
- for attr, attr_type in six.iteritems(klass.swagger_types):
- if (data is not None and
- klass.attribute_map[attr] in data and
- isinstance(data, (list, dict))):
- value = data[klass.attribute_map[attr]]
- kwargs[attr] = self.__deserialize(value, attr_type)
-
- instance = klass(**kwargs)
-
- if (isinstance(instance, dict) and
- klass.swagger_types is not None and
- isinstance(data, dict)):
- for key, value in data.items():
- if key not in klass.swagger_types:
- instance[key] = value
- if self.__hasattr(instance, 'get_real_child_model'):
- klass_name = instance.get_real_child_model(data)
- if klass_name:
- instance = self.__deserialize(data, klass_name)
- return instance
diff --git a/.invenio/api_analyse/configuration.py b/.invenio/api_analyse/configuration.py
deleted file mode 100644
index e6935e12c3..0000000000
--- a/.invenio/api_analyse/configuration.py
+++ /dev/null
@@ -1,244 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-import copy
-import logging
-import multiprocessing
-import sys
-import urllib3
-
-import six
-from six.moves import http_client as httplib
-
-
-class TypeWithDefault(type):
- def __init__(cls, name, bases, dct):
- super(TypeWithDefault, cls).__init__(name, bases, dct)
- cls._default = None
-
- def __call__(cls):
- if cls._default is None:
- cls._default = type.__call__(cls)
- return copy.copy(cls._default)
-
- def set_default(cls, default):
- cls._default = copy.copy(default)
-
-
-class Configuration(six.with_metaclass(TypeWithDefault, object)):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Ref: https://github.com/swagger-api/swagger-codegen
- Do not edit the class manually.
- """
-
- def __init__(self):
- """Constructor"""
- # Default Base url
- self.host = "https://virtserver.swaggerhub.com/mweise/dbrepo-debug/1.1.0-alpha"
- # Temp file folder for downloading files
- self.temp_folder_path = None
-
- # Authentication Settings
- # dict to store API key(s)
- self.api_key = {}
- # dict to store API prefix (e.g. Bearer)
- self.api_key_prefix = {}
- # function to refresh API key if expired
- self.refresh_api_key_hook = None
- # Username for HTTP basic authentication
- self.username = ""
- # Password for HTTP basic authentication
- self.password = ""
- # Logging Settings
- self.logger = {}
- self.logger["package_logger"] = logging.getLogger("api_analyse")
- self.logger["urllib3_logger"] = logging.getLogger("urllib3")
- # Log format
- self.logger_format = '%(asctime)s %(levelname)s %(message)s'
- # Log stream handler
- self.logger_stream_handler = None
- # Log file handler
- self.logger_file_handler = None
- # Debug file location
- self.logger_file = None
- # Debug switch
- self.debug = False
-
- # SSL/TLS verification
- # Set this to false to skip verifying SSL certificate when calling API
- # from https server.
- self.verify_ssl = True
- # Set this to customize the certificate file to verify the peer.
- self.ssl_ca_cert = None
- # client certificate file
- self.cert_file = None
- # client key file
- self.key_file = None
- # Set this to True/False to enable/disable SSL hostname verification.
- self.assert_hostname = None
-
- # urllib3 connection pool's maximum number of connections saved
- # per pool. urllib3 uses 1 connection as default value, but this is
- # not the best value when you are making a lot of possibly parallel
- # requests to the same host, which is often the case here.
- # cpu_count * 5 is used as default value to increase performance.
- self.connection_pool_maxsize = multiprocessing.cpu_count() * 5
-
- # Proxy URL
- self.proxy = None
- # Safe chars for path_param
- self.safe_chars_for_path_param = ''
-
- @property
- def logger_file(self):
- """The logger file.
-
- If the logger_file is None, then add stream handler and remove file
- handler. Otherwise, add file handler and remove stream handler.
-
- :param value: The logger_file path.
- :type: str
- """
- return self.__logger_file
-
- @logger_file.setter
- def logger_file(self, value):
- """The logger file.
-
- If the logger_file is None, then add stream handler and remove file
- handler. Otherwise, add file handler and remove stream handler.
-
- :param value: The logger_file path.
- :type: str
- """
- self.__logger_file = value
- if self.__logger_file:
- # If set logging file,
- # then add file handler and remove stream handler.
- self.logger_file_handler = logging.FileHandler(self.__logger_file)
- self.logger_file_handler.setFormatter(self.logger_formatter)
- for _, logger in six.iteritems(self.logger):
- logger.addHandler(self.logger_file_handler)
- if self.logger_stream_handler:
- logger.removeHandler(self.logger_stream_handler)
- else:
- # If not set logging file,
- # then add stream handler and remove file handler.
- self.logger_stream_handler = logging.StreamHandler()
- self.logger_stream_handler.setFormatter(self.logger_formatter)
- for _, logger in six.iteritems(self.logger):
- logger.addHandler(self.logger_stream_handler)
- if self.logger_file_handler:
- logger.removeHandler(self.logger_file_handler)
-
- @property
- def debug(self):
- """Debug status
-
- :param value: The debug status, True or False.
- :type: bool
- """
- return self.__debug
-
- @debug.setter
- def debug(self, value):
- """Debug status
-
- :param value: The debug status, True or False.
- :type: bool
- """
- self.__debug = value
- if self.__debug:
- # if debug status is True, turn on debug logging
- for _, logger in six.iteritems(self.logger):
- logger.setLevel(logging.DEBUG)
- # turn on httplib debug
- httplib.HTTPConnection.debuglevel = 1
- else:
- # if debug status is False, turn off debug logging,
- # setting log level to default `logging.WARNING`
- for _, logger in six.iteritems(self.logger):
- logger.setLevel(logging.WARNING)
- # turn off httplib debug
- httplib.HTTPConnection.debuglevel = 0
-
- @property
- def logger_format(self):
- """The logger format.
-
- The logger_formatter will be updated when sets logger_format.
-
- :param value: The format string.
- :type: str
- """
- return self.__logger_format
-
- @logger_format.setter
- def logger_format(self, value):
- """The logger format.
-
- The logger_formatter will be updated when sets logger_format.
-
- :param value: The format string.
- :type: str
- """
- self.__logger_format = value
- self.logger_formatter = logging.Formatter(self.__logger_format)
-
- def get_api_key_with_prefix(self, identifier):
- """Gets API key (with prefix if set).
-
- :param identifier: The identifier of apiKey.
- :return: The token for api key authentication.
- """
- if self.refresh_api_key_hook:
- self.refresh_api_key_hook(self)
-
- key = self.api_key.get(identifier)
- if key:
- prefix = self.api_key_prefix.get(identifier)
- if prefix:
- return "%s %s" % (prefix, key)
- else:
- return key
-
- def get_basic_auth_token(self):
- """Gets HTTP basic authentication header (string).
-
- :return: The token for basic HTTP authentication.
- """
- return urllib3.util.make_headers(
- basic_auth=self.username + ':' + self.password
- ).get('authorization')
-
- def auth_settings(self):
- """Gets Auth Settings dict for api client.
-
- :return: The Auth Settings information dict.
- """
- return {
- }
-
- def to_debug_report(self):
- """Gets the essential information for debugging.
-
- :return: The report for debugging.
- """
- return "Python SDK Debug Report:\n"\
- "OS: {env}\n"\
- "Python Version: {pyversion}\n"\
- "Version of the API: 1.1.0-alpha\n"\
- "SDK Package Version: 1.0.0".\
- format(env=sys.platform, pyversion=sys.version)
diff --git a/.invenio/api_analyse/models/__init__.py b/.invenio/api_analyse/models/__init__.py
deleted file mode 100644
index 78953e7f5a..0000000000
--- a/.invenio/api_analyse/models/__init__.py
+++ /dev/null
@@ -1,23 +0,0 @@
-# coding: utf-8
-
-# flake8: noqa
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-# import models into model package
-from api_analyse.models.analyse_determinepk_body import AnalyseDeterminepkBody
-from api_analyse.models.data_type_dto import DataTypeDto
-from api_analyse.models.determine_data_type_request_dto import DetermineDataTypeRequestDto
-from api_analyse.models.determine_data_type_response_dto import DetermineDataTypeResponseDto
-from api_analyse.models.determine_primary_key_dto import DeterminePrimaryKeyDto
-from api_analyse.models.error_dto import ErrorDto
-from api_analyse.models.update_column_dto import UpdateColumnDto
diff --git a/.invenio/api_analyse/models/__pycache__/__init__.cpython-36.pyc b/.invenio/api_analyse/models/__pycache__/__init__.cpython-36.pyc
deleted file mode 100644
index 0c46d3b3c296e2529109ca7ee6f14e733f5c0b70..0000000000000000000000000000000000000000
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diff --git a/.invenio/api_analyse/models/analyse_determinedt_body.py b/.invenio/api_analyse/models/analyse_determinedt_body.py
deleted file mode 100644
index e34fed7752..0000000000
--- a/.invenio/api_analyse/models/analyse_determinedt_body.py
+++ /dev/null
@@ -1,188 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class AnalyseDeterminedtBody(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'filepath': 'str',
- 'enum': 'bool',
- 'enum_tol': 'object',
- 'separator': 'str'
- }
-
- attribute_map = {
- 'filepath': 'filepath',
- 'enum': 'enum',
- 'enum_tol': 'enum_tol',
- 'separator': 'separator'
- }
-
- def __init__(self, filepath=None, enum=None, enum_tol=None, separator=None): # noqa: E501
- """AnalyseDeterminedtBody - a model defined in Swagger""" # noqa: E501
- self._filepath = None
- self._enum = None
- self._enum_tol = None
- self._separator = None
- self.discriminator = None
- if filepath is not None:
- self.filepath = filepath
- if enum is not None:
- self.enum = enum
- if enum_tol is not None:
- self.enum_tol = enum_tol
- if separator is not None:
- self.separator = separator
-
- @property
- def filepath(self):
- """Gets the filepath of this AnalyseDeterminedtBody. # noqa: E501
-
-
- :return: The filepath of this AnalyseDeterminedtBody. # noqa: E501
- :rtype: str
- """
- return self._filepath
-
- @filepath.setter
- def filepath(self, filepath):
- """Sets the filepath of this AnalyseDeterminedtBody.
-
-
- :param filepath: The filepath of this AnalyseDeterminedtBody. # noqa: E501
- :type: str
- """
-
- self._filepath = filepath
-
- @property
- def enum(self):
- """Gets the enum of this AnalyseDeterminedtBody. # noqa: E501
-
-
- :return: The enum of this AnalyseDeterminedtBody. # noqa: E501
- :rtype: bool
- """
- return self._enum
-
- @enum.setter
- def enum(self, enum):
- """Sets the enum of this AnalyseDeterminedtBody.
-
-
- :param enum: The enum of this AnalyseDeterminedtBody. # noqa: E501
- :type: bool
- """
-
- self._enum = enum
-
- @property
- def enum_tol(self):
- """Gets the enum_tol of this AnalyseDeterminedtBody. # noqa: E501
-
-
- :return: The enum_tol of this AnalyseDeterminedtBody. # noqa: E501
- :rtype: object
- """
- return self._enum_tol
-
- @enum_tol.setter
- def enum_tol(self, enum_tol):
- """Sets the enum_tol of this AnalyseDeterminedtBody.
-
-
- :param enum_tol: The enum_tol of this AnalyseDeterminedtBody. # noqa: E501
- :type: object
- """
-
- self._enum_tol = enum_tol
-
- @property
- def separator(self):
- """Gets the separator of this AnalyseDeterminedtBody. # noqa: E501
-
-
- :return: The separator of this AnalyseDeterminedtBody. # noqa: E501
- :rtype: str
- """
- return self._separator
-
- @separator.setter
- def separator(self, separator):
- """Sets the separator of this AnalyseDeterminedtBody.
-
-
- :param separator: The separator of this AnalyseDeterminedtBody. # noqa: E501
- :type: str
- """
-
- self._separator = separator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(AnalyseDeterminedtBody, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, AnalyseDeterminedtBody):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/analyse_determinepk_body.py b/.invenio/api_analyse/models/analyse_determinepk_body.py
deleted file mode 100644
index 658952ec1b..0000000000
--- a/.invenio/api_analyse/models/analyse_determinepk_body.py
+++ /dev/null
@@ -1,136 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class AnalyseDeterminepkBody(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'filepath': 'str',
- 'seperator': 'str'
- }
-
- attribute_map = {
- 'filepath': 'filepath',
- 'seperator': 'seperator'
- }
-
- def __init__(self, filepath=None, seperator=None): # noqa: E501
- """AnalyseDeterminepkBody - a model defined in Swagger""" # noqa: E501
- self._filepath = None
- self._seperator = None
- self.discriminator = None
- if filepath is not None:
- self.filepath = filepath
- if seperator is not None:
- self.seperator = seperator
-
- @property
- def filepath(self):
- """Gets the filepath of this AnalyseDeterminepkBody. # noqa: E501
-
-
- :return: The filepath of this AnalyseDeterminepkBody. # noqa: E501
- :rtype: str
- """
- return self._filepath
-
- @filepath.setter
- def filepath(self, filepath):
- """Sets the filepath of this AnalyseDeterminepkBody.
-
-
- :param filepath: The filepath of this AnalyseDeterminepkBody. # noqa: E501
- :type: str
- """
-
- self._filepath = filepath
-
- @property
- def seperator(self):
- """Gets the seperator of this AnalyseDeterminepkBody. # noqa: E501
-
-
- :return: The seperator of this AnalyseDeterminepkBody. # noqa: E501
- :rtype: str
- """
- return self._seperator
-
- @seperator.setter
- def seperator(self, seperator):
- """Sets the seperator of this AnalyseDeterminepkBody.
-
-
- :param seperator: The seperator of this AnalyseDeterminepkBody. # noqa: E501
- :type: str
- """
-
- self._seperator = seperator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(AnalyseDeterminepkBody, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, AnalyseDeterminepkBody):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/analyse_update_mdb_col_body.py b/.invenio/api_analyse/models/analyse_update_mdb_col_body.py
deleted file mode 100644
index 1f4d4ad719..0000000000
--- a/.invenio/api_analyse/models/analyse_update_mdb_col_body.py
+++ /dev/null
@@ -1,162 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class AnalyseUpdateMdbColBody(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'dbid': 'int',
- 'tid': 'int',
- 'cid': 'int'
- }
-
- attribute_map = {
- 'dbid': 'dbid',
- 'tid': 'tid',
- 'cid': 'cid'
- }
-
- def __init__(self, dbid=None, tid=None, cid=None): # noqa: E501
- """AnalyseUpdateMdbColBody - a model defined in Swagger""" # noqa: E501
- self._dbid = None
- self._tid = None
- self._cid = None
- self.discriminator = None
- if dbid is not None:
- self.dbid = dbid
- if tid is not None:
- self.tid = tid
- if cid is not None:
- self.cid = cid
-
- @property
- def dbid(self):
- """Gets the dbid of this AnalyseUpdateMdbColBody. # noqa: E501
-
-
- :return: The dbid of this AnalyseUpdateMdbColBody. # noqa: E501
- :rtype: int
- """
- return self._dbid
-
- @dbid.setter
- def dbid(self, dbid):
- """Sets the dbid of this AnalyseUpdateMdbColBody.
-
-
- :param dbid: The dbid of this AnalyseUpdateMdbColBody. # noqa: E501
- :type: int
- """
-
- self._dbid = dbid
-
- @property
- def tid(self):
- """Gets the tid of this AnalyseUpdateMdbColBody. # noqa: E501
-
-
- :return: The tid of this AnalyseUpdateMdbColBody. # noqa: E501
- :rtype: int
- """
- return self._tid
-
- @tid.setter
- def tid(self, tid):
- """Sets the tid of this AnalyseUpdateMdbColBody.
-
-
- :param tid: The tid of this AnalyseUpdateMdbColBody. # noqa: E501
- :type: int
- """
-
- self._tid = tid
-
- @property
- def cid(self):
- """Gets the cid of this AnalyseUpdateMdbColBody. # noqa: E501
-
-
- :return: The cid of this AnalyseUpdateMdbColBody. # noqa: E501
- :rtype: int
- """
- return self._cid
-
- @cid.setter
- def cid(self, cid):
- """Sets the cid of this AnalyseUpdateMdbColBody.
-
-
- :param cid: The cid of this AnalyseUpdateMdbColBody. # noqa: E501
- :type: int
- """
-
- self._cid = cid
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(AnalyseUpdateMdbColBody, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, AnalyseUpdateMdbColBody):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/data_type_dto.py b/.invenio/api_analyse/models/data_type_dto.py
deleted file mode 100644
index 610ccfe165..0000000000
--- a/.invenio/api_analyse/models/data_type_dto.py
+++ /dev/null
@@ -1,84 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class DataTypeDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- }
-
- attribute_map = {
- }
-
- def __init__(self): # noqa: E501
- """DataTypeDto - a model defined in Swagger""" # noqa: E501
- self.discriminator = None
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(DataTypeDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, DataTypeDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/determine_data_type_dto.py b/.invenio/api_analyse/models/determine_data_type_dto.py
deleted file mode 100644
index 32ac968bb7..0000000000
--- a/.invenio/api_analyse/models/determine_data_type_dto.py
+++ /dev/null
@@ -1,189 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class DetermineDataTypeDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'filepath': 'str',
- 'enum': 'bool',
- 'enum_tol': 'object',
- 'separator': 'str'
- }
-
- attribute_map = {
- 'filepath': 'filepath',
- 'enum': 'enum',
- 'enum_tol': 'enum_tol',
- 'separator': 'separator'
- }
-
- def __init__(self, filepath=None, enum=None, enum_tol=None, separator=None): # noqa: E501
- """DetermineDataTypeDto - a model defined in Swagger""" # noqa: E501
- self._filepath = None
- self._enum = None
- self._enum_tol = None
- self._separator = None
- self.discriminator = None
- self.filepath = filepath
- if enum is not None:
- self.enum = enum
- if enum_tol is not None:
- self.enum_tol = enum_tol
- if separator is not None:
- self.separator = separator
-
- @property
- def filepath(self):
- """Gets the filepath of this DetermineDataTypeDto. # noqa: E501
-
-
- :return: The filepath of this DetermineDataTypeDto. # noqa: E501
- :rtype: str
- """
- return self._filepath
-
- @filepath.setter
- def filepath(self, filepath):
- """Sets the filepath of this DetermineDataTypeDto.
-
-
- :param filepath: The filepath of this DetermineDataTypeDto. # noqa: E501
- :type: str
- """
- if filepath is None:
- raise ValueError("Invalid value for `filepath`, must not be `None`") # noqa: E501
-
- self._filepath = filepath
-
- @property
- def enum(self):
- """Gets the enum of this DetermineDataTypeDto. # noqa: E501
-
-
- :return: The enum of this DetermineDataTypeDto. # noqa: E501
- :rtype: bool
- """
- return self._enum
-
- @enum.setter
- def enum(self, enum):
- """Sets the enum of this DetermineDataTypeDto.
-
-
- :param enum: The enum of this DetermineDataTypeDto. # noqa: E501
- :type: bool
- """
-
- self._enum = enum
-
- @property
- def enum_tol(self):
- """Gets the enum_tol of this DetermineDataTypeDto. # noqa: E501
-
-
- :return: The enum_tol of this DetermineDataTypeDto. # noqa: E501
- :rtype: object
- """
- return self._enum_tol
-
- @enum_tol.setter
- def enum_tol(self, enum_tol):
- """Sets the enum_tol of this DetermineDataTypeDto.
-
-
- :param enum_tol: The enum_tol of this DetermineDataTypeDto. # noqa: E501
- :type: object
- """
-
- self._enum_tol = enum_tol
-
- @property
- def separator(self):
- """Gets the separator of this DetermineDataTypeDto. # noqa: E501
-
-
- :return: The separator of this DetermineDataTypeDto. # noqa: E501
- :rtype: str
- """
- return self._separator
-
- @separator.setter
- def separator(self, separator):
- """Sets the separator of this DetermineDataTypeDto.
-
-
- :param separator: The separator of this DetermineDataTypeDto. # noqa: E501
- :type: str
- """
-
- self._separator = separator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(DetermineDataTypeDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, DetermineDataTypeDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/determine_data_type_request_dto.py b/.invenio/api_analyse/models/determine_data_type_request_dto.py
deleted file mode 100644
index 8d642ac543..0000000000
--- a/.invenio/api_analyse/models/determine_data_type_request_dto.py
+++ /dev/null
@@ -1,189 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class DetermineDataTypeRequestDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'filepath': 'str',
- 'enum': 'bool',
- 'enum_tol': 'object',
- 'separator': 'str'
- }
-
- attribute_map = {
- 'filepath': 'filepath',
- 'enum': 'enum',
- 'enum_tol': 'enum_tol',
- 'separator': 'separator'
- }
-
- def __init__(self, filepath=None, enum=None, enum_tol=None, separator=None): # noqa: E501
- """DetermineDataTypeRequestDto - a model defined in Swagger""" # noqa: E501
- self._filepath = None
- self._enum = None
- self._enum_tol = None
- self._separator = None
- self.discriminator = None
- self.filepath = filepath
- if enum is not None:
- self.enum = enum
- if enum_tol is not None:
- self.enum_tol = enum_tol
- if separator is not None:
- self.separator = separator
-
- @property
- def filepath(self):
- """Gets the filepath of this DetermineDataTypeRequestDto. # noqa: E501
-
-
- :return: The filepath of this DetermineDataTypeRequestDto. # noqa: E501
- :rtype: str
- """
- return self._filepath
-
- @filepath.setter
- def filepath(self, filepath):
- """Sets the filepath of this DetermineDataTypeRequestDto.
-
-
- :param filepath: The filepath of this DetermineDataTypeRequestDto. # noqa: E501
- :type: str
- """
- if filepath is None:
- raise ValueError("Invalid value for `filepath`, must not be `None`") # noqa: E501
-
- self._filepath = filepath
-
- @property
- def enum(self):
- """Gets the enum of this DetermineDataTypeRequestDto. # noqa: E501
-
-
- :return: The enum of this DetermineDataTypeRequestDto. # noqa: E501
- :rtype: bool
- """
- return self._enum
-
- @enum.setter
- def enum(self, enum):
- """Sets the enum of this DetermineDataTypeRequestDto.
-
-
- :param enum: The enum of this DetermineDataTypeRequestDto. # noqa: E501
- :type: bool
- """
-
- self._enum = enum
-
- @property
- def enum_tol(self):
- """Gets the enum_tol of this DetermineDataTypeRequestDto. # noqa: E501
-
-
- :return: The enum_tol of this DetermineDataTypeRequestDto. # noqa: E501
- :rtype: object
- """
- return self._enum_tol
-
- @enum_tol.setter
- def enum_tol(self, enum_tol):
- """Sets the enum_tol of this DetermineDataTypeRequestDto.
-
-
- :param enum_tol: The enum_tol of this DetermineDataTypeRequestDto. # noqa: E501
- :type: object
- """
-
- self._enum_tol = enum_tol
-
- @property
- def separator(self):
- """Gets the separator of this DetermineDataTypeRequestDto. # noqa: E501
-
-
- :return: The separator of this DetermineDataTypeRequestDto. # noqa: E501
- :rtype: str
- """
- return self._separator
-
- @separator.setter
- def separator(self, separator):
- """Sets the separator of this DetermineDataTypeRequestDto.
-
-
- :param separator: The separator of this DetermineDataTypeRequestDto. # noqa: E501
- :type: str
- """
-
- self._separator = separator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(DetermineDataTypeRequestDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, DetermineDataTypeRequestDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/determine_data_type_response_dto.py b/.invenio/api_analyse/models/determine_data_type_response_dto.py
deleted file mode 100644
index 3e22371063..0000000000
--- a/.invenio/api_analyse/models/determine_data_type_response_dto.py
+++ /dev/null
@@ -1,138 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class DetermineDataTypeResponseDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'columns': 'list[DataTypeDto]',
- 'separator': 'str'
- }
-
- attribute_map = {
- 'columns': 'columns',
- 'separator': 'separator'
- }
-
- def __init__(self, columns=None, separator=None): # noqa: E501
- """DetermineDataTypeResponseDto - a model defined in Swagger""" # noqa: E501
- self._columns = None
- self._separator = None
- self.discriminator = None
- self.columns = columns
- self.separator = separator
-
- @property
- def columns(self):
- """Gets the columns of this DetermineDataTypeResponseDto. # noqa: E501
-
-
- :return: The columns of this DetermineDataTypeResponseDto. # noqa: E501
- :rtype: list[DataTypeDto]
- """
- return self._columns
-
- @columns.setter
- def columns(self, columns):
- """Sets the columns of this DetermineDataTypeResponseDto.
-
-
- :param columns: The columns of this DetermineDataTypeResponseDto. # noqa: E501
- :type: list[DataTypeDto]
- """
- if columns is None:
- raise ValueError("Invalid value for `columns`, must not be `None`") # noqa: E501
-
- self._columns = columns
-
- @property
- def separator(self):
- """Gets the separator of this DetermineDataTypeResponseDto. # noqa: E501
-
-
- :return: The separator of this DetermineDataTypeResponseDto. # noqa: E501
- :rtype: str
- """
- return self._separator
-
- @separator.setter
- def separator(self, separator):
- """Sets the separator of this DetermineDataTypeResponseDto.
-
-
- :param separator: The separator of this DetermineDataTypeResponseDto. # noqa: E501
- :type: str
- """
- if separator is None:
- raise ValueError("Invalid value for `separator`, must not be `None`") # noqa: E501
-
- self._separator = separator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(DetermineDataTypeResponseDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, DetermineDataTypeResponseDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/determine_primary_key_dto.py b/.invenio/api_analyse/models/determine_primary_key_dto.py
deleted file mode 100644
index c93d535b2b..0000000000
--- a/.invenio/api_analyse/models/determine_primary_key_dto.py
+++ /dev/null
@@ -1,137 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class DeterminePrimaryKeyDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'filepath': 'str',
- 'seperator': 'str'
- }
-
- attribute_map = {
- 'filepath': 'filepath',
- 'seperator': 'seperator'
- }
-
- def __init__(self, filepath=None, seperator=None): # noqa: E501
- """DeterminePrimaryKeyDto - a model defined in Swagger""" # noqa: E501
- self._filepath = None
- self._seperator = None
- self.discriminator = None
- self.filepath = filepath
- if seperator is not None:
- self.seperator = seperator
-
- @property
- def filepath(self):
- """Gets the filepath of this DeterminePrimaryKeyDto. # noqa: E501
-
-
- :return: The filepath of this DeterminePrimaryKeyDto. # noqa: E501
- :rtype: str
- """
- return self._filepath
-
- @filepath.setter
- def filepath(self, filepath):
- """Sets the filepath of this DeterminePrimaryKeyDto.
-
-
- :param filepath: The filepath of this DeterminePrimaryKeyDto. # noqa: E501
- :type: str
- """
- if filepath is None:
- raise ValueError("Invalid value for `filepath`, must not be `None`") # noqa: E501
-
- self._filepath = filepath
-
- @property
- def seperator(self):
- """Gets the seperator of this DeterminePrimaryKeyDto. # noqa: E501
-
-
- :return: The seperator of this DeterminePrimaryKeyDto. # noqa: E501
- :rtype: str
- """
- return self._seperator
-
- @seperator.setter
- def seperator(self, seperator):
- """Sets the seperator of this DeterminePrimaryKeyDto.
-
-
- :param seperator: The seperator of this DeterminePrimaryKeyDto. # noqa: E501
- :type: str
- """
-
- self._seperator = seperator
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(DeterminePrimaryKeyDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, DeterminePrimaryKeyDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/error_dto.py b/.invenio/api_analyse/models/error_dto.py
deleted file mode 100644
index 4ac5fa13f2..0000000000
--- a/.invenio/api_analyse/models/error_dto.py
+++ /dev/null
@@ -1,137 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class ErrorDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'success': 'bool',
- 'message': 'str'
- }
-
- attribute_map = {
- 'success': 'success',
- 'message': 'message'
- }
-
- def __init__(self, success=None, message=None): # noqa: E501
- """ErrorDto - a model defined in Swagger""" # noqa: E501
- self._success = None
- self._message = None
- self.discriminator = None
- self.success = success
- if message is not None:
- self.message = message
-
- @property
- def success(self):
- """Gets the success of this ErrorDto. # noqa: E501
-
-
- :return: The success of this ErrorDto. # noqa: E501
- :rtype: bool
- """
- return self._success
-
- @success.setter
- def success(self, success):
- """Sets the success of this ErrorDto.
-
-
- :param success: The success of this ErrorDto. # noqa: E501
- :type: bool
- """
- if success is None:
- raise ValueError("Invalid value for `success`, must not be `None`") # noqa: E501
-
- self._success = success
-
- @property
- def message(self):
- """Gets the message of this ErrorDto. # noqa: E501
-
-
- :return: The message of this ErrorDto. # noqa: E501
- :rtype: str
- """
- return self._message
-
- @message.setter
- def message(self, message):
- """Sets the message of this ErrorDto.
-
-
- :param message: The message of this ErrorDto. # noqa: E501
- :type: str
- """
-
- self._message = message
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(ErrorDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, ErrorDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/models/update_column_dto.py b/.invenio/api_analyse/models/update_column_dto.py
deleted file mode 100644
index 62c971fcf6..0000000000
--- a/.invenio/api_analyse/models/update_column_dto.py
+++ /dev/null
@@ -1,165 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-import pprint
-import re # noqa: F401
-
-import six
-
-class UpdateColumnDto(object):
- """NOTE: This class is auto generated by the swagger code generator program.
-
- Do not edit the class manually.
- """
- """
- Attributes:
- swagger_types (dict): The key is attribute name
- and the value is attribute type.
- attribute_map (dict): The key is attribute name
- and the value is json key in definition.
- """
- swagger_types = {
- 'dbid': 'int',
- 'tid': 'int',
- 'cid': 'int'
- }
-
- attribute_map = {
- 'dbid': 'dbid',
- 'tid': 'tid',
- 'cid': 'cid'
- }
-
- def __init__(self, dbid=None, tid=None, cid=None): # noqa: E501
- """UpdateColumnDto - a model defined in Swagger""" # noqa: E501
- self._dbid = None
- self._tid = None
- self._cid = None
- self.discriminator = None
- self.dbid = dbid
- self.tid = tid
- self.cid = cid
-
- @property
- def dbid(self):
- """Gets the dbid of this UpdateColumnDto. # noqa: E501
-
-
- :return: The dbid of this UpdateColumnDto. # noqa: E501
- :rtype: int
- """
- return self._dbid
-
- @dbid.setter
- def dbid(self, dbid):
- """Sets the dbid of this UpdateColumnDto.
-
-
- :param dbid: The dbid of this UpdateColumnDto. # noqa: E501
- :type: int
- """
- if dbid is None:
- raise ValueError("Invalid value for `dbid`, must not be `None`") # noqa: E501
-
- self._dbid = dbid
-
- @property
- def tid(self):
- """Gets the tid of this UpdateColumnDto. # noqa: E501
-
-
- :return: The tid of this UpdateColumnDto. # noqa: E501
- :rtype: int
- """
- return self._tid
-
- @tid.setter
- def tid(self, tid):
- """Sets the tid of this UpdateColumnDto.
-
-
- :param tid: The tid of this UpdateColumnDto. # noqa: E501
- :type: int
- """
- if tid is None:
- raise ValueError("Invalid value for `tid`, must not be `None`") # noqa: E501
-
- self._tid = tid
-
- @property
- def cid(self):
- """Gets the cid of this UpdateColumnDto. # noqa: E501
-
-
- :return: The cid of this UpdateColumnDto. # noqa: E501
- :rtype: int
- """
- return self._cid
-
- @cid.setter
- def cid(self, cid):
- """Sets the cid of this UpdateColumnDto.
-
-
- :param cid: The cid of this UpdateColumnDto. # noqa: E501
- :type: int
- """
- if cid is None:
- raise ValueError("Invalid value for `cid`, must not be `None`") # noqa: E501
-
- self._cid = cid
-
- def to_dict(self):
- """Returns the model properties as a dict"""
- result = {}
-
- for attr, _ in six.iteritems(self.swagger_types):
- value = getattr(self, attr)
- if isinstance(value, list):
- result[attr] = list(map(
- lambda x: x.to_dict() if hasattr(x, "to_dict") else x,
- value
- ))
- elif hasattr(value, "to_dict"):
- result[attr] = value.to_dict()
- elif isinstance(value, dict):
- result[attr] = dict(map(
- lambda item: (item[0], item[1].to_dict())
- if hasattr(item[1], "to_dict") else item,
- value.items()
- ))
- else:
- result[attr] = value
- if issubclass(UpdateColumnDto, dict):
- for key, value in self.items():
- result[key] = value
-
- return result
-
- def to_str(self):
- """Returns the string representation of the model"""
- return pprint.pformat(self.to_dict())
-
- def __repr__(self):
- """For `print` and `pprint`"""
- return self.to_str()
-
- def __eq__(self, other):
- """Returns true if both objects are equal"""
- if not isinstance(other, UpdateColumnDto):
- return False
-
- return self.__dict__ == other.__dict__
-
- def __ne__(self, other):
- """Returns true if both objects are not equal"""
- return not self == other
diff --git a/.invenio/api_analyse/rest.py b/.invenio/api_analyse/rest.py
deleted file mode 100644
index 8a9e516e2d..0000000000
--- a/.invenio/api_analyse/rest.py
+++ /dev/null
@@ -1,317 +0,0 @@
-# coding: utf-8
-
-"""
- Database Repository Analyse Service API
-
- Service that manages the analysis # noqa: E501
-
- OpenAPI spec version: 1.1.0-alpha
- Contact: andreas.rauber@tuwien.ac.at
- Generated by: https://github.com/swagger-api/swagger-codegen.git
-"""
-
-from __future__ import absolute_import
-
-import io
-import json
-import logging
-import re
-import ssl
-
-import certifi
-# python 2 and python 3 compatibility library
-import six
-from six.moves.urllib.parse import urlencode
-
-try:
- import urllib3
-except ImportError:
- raise ImportError('Swagger python client requires urllib3.')
-
-
-logger = logging.getLogger(__name__)
-
-
-class RESTResponse(io.IOBase):
-
- def __init__(self, resp):
- self.urllib3_response = resp
- self.status = resp.status
- self.reason = resp.reason
- self.data = resp.data
-
- def getheaders(self):
- """Returns a dictionary of the response headers."""
- return self.urllib3_response.getheaders()
-
- def getheader(self, name, default=None):
- """Returns a given response header."""
- return self.urllib3_response.getheader(name, default)
-
-
-class RESTClientObject(object):
-
- def __init__(self, configuration, pools_size=4, maxsize=None):
- # urllib3.PoolManager will pass all kw parameters to connectionpool
- # https://github.com/shazow/urllib3/blob/f9409436f83aeb79fbaf090181cd81b784f1b8ce/urllib3/poolmanager.py#L75 # noqa: E501
- # https://github.com/shazow/urllib3/blob/f9409436f83aeb79fbaf090181cd81b784f1b8ce/urllib3/connectionpool.py#L680 # noqa: E501
- # maxsize is the number of requests to host that are allowed in parallel # noqa: E501
- # Custom SSL certificates and client certificates: http://urllib3.readthedocs.io/en/latest/advanced-usage.html # noqa: E501
-
- # cert_reqs
- if configuration.verify_ssl:
- cert_reqs = ssl.CERT_REQUIRED
- else:
- cert_reqs = ssl.CERT_NONE
-
- # ca_certs
- if configuration.ssl_ca_cert:
- ca_certs = configuration.ssl_ca_cert
- else:
- # if not set certificate file, use Mozilla's root certificates.
- ca_certs = certifi.where()
-
- addition_pool_args = {}
- if configuration.assert_hostname is not None:
- addition_pool_args['assert_hostname'] = configuration.assert_hostname # noqa: E501
-
- if maxsize is None:
- if configuration.connection_pool_maxsize is not None:
- maxsize = configuration.connection_pool_maxsize
- else:
- maxsize = 4
-
- # https pool manager
- if configuration.proxy:
- self.pool_manager = urllib3.ProxyManager(
- num_pools=pools_size,
- maxsize=maxsize,
- cert_reqs=cert_reqs,
- ca_certs=ca_certs,
- cert_file=configuration.cert_file,
- key_file=configuration.key_file,
- proxy_url=configuration.proxy,
- **addition_pool_args
- )
- else:
- self.pool_manager = urllib3.PoolManager(
- num_pools=pools_size,
- maxsize=maxsize,
- cert_reqs=cert_reqs,
- ca_certs=ca_certs,
- cert_file=configuration.cert_file,
- key_file=configuration.key_file,
- **addition_pool_args
- )
-
- def request(self, method, url, query_params=None, headers=None,
- body=None, post_params=None, _preload_content=True,
- _request_timeout=None):
- """Perform requests.
-
- :param method: http request method
- :param url: http request url
- :param query_params: query parameters in the url
- :param headers: http request headers
- :param body: request json body, for `application/json`
- :param post_params: request post parameters,
- `application/x-www-form-urlencoded`
- and `multipart/form-data`
- :param _preload_content: if False, the urllib3.HTTPResponse object will
- be returned without reading/decoding response
- data. Default is True.
- :param _request_timeout: timeout setting for this request. If one
- number provided, it will be total request
- timeout. It can also be a pair (tuple) of
- (connection, read) timeouts.
- """
- method = method.upper()
- assert method in ['GET', 'HEAD', 'DELETE', 'POST', 'PUT',
- 'PATCH', 'OPTIONS']
-
- if post_params and body:
- raise ValueError(
- "body parameter cannot be used with post_params parameter."
- )
-
- post_params = post_params or {}
- headers = headers or {}
-
- timeout = None
- if _request_timeout:
- if isinstance(_request_timeout, (int, ) if six.PY3 else (int, long)): # noqa: E501,F821
- timeout = urllib3.Timeout(total=_request_timeout)
- elif (isinstance(_request_timeout, tuple) and
- len(_request_timeout) == 2):
- timeout = urllib3.Timeout(
- connect=_request_timeout[0], read=_request_timeout[1])
-
- if 'Content-Type' not in headers:
- headers['Content-Type'] = 'application/json'
-
- try:
- # For `POST`, `PUT`, `PATCH`, `OPTIONS`, `DELETE`
- if method in ['POST', 'PUT', 'PATCH', 'OPTIONS', 'DELETE']:
- if query_params:
- url += '?' + urlencode(query_params)
- if re.search('json', headers['Content-Type'], re.IGNORECASE):
- request_body = '{}'
- if body is not None:
- request_body = json.dumps(body)
- r = self.pool_manager.request(
- method, url,
- body=request_body,
- preload_content=_preload_content,
- timeout=timeout,
- headers=headers)
- elif headers['Content-Type'] == 'application/x-www-form-urlencoded': # noqa: E501
- r = self.pool_manager.request(
- method, url,
- fields=post_params,
- encode_multipart=False,
- preload_content=_preload_content,
- timeout=timeout,
- headers=headers)
- elif headers['Content-Type'] == 'multipart/form-data':
- # must del headers['Content-Type'], or the correct
- # Content-Type which generated by urllib3 will be
- # overwritten.
- del headers['Content-Type']
- r = self.pool_manager.request(
- method, url,
- fields=post_params,
- encode_multipart=True,
- preload_content=_preload_content,
- timeout=timeout,
- headers=headers)
- # Pass a `string` parameter directly in the body to support
- # other content types than Json when `body` argument is
- # provided in serialized form
- elif isinstance(body, str):
- request_body = body
- r = self.pool_manager.request(
- method, url,
- body=request_body,
- preload_content=_preload_content,
- timeout=timeout,
- headers=headers)
- else:
- # Cannot generate the request from given parameters
- msg = """Cannot prepare a request message for provided
- arguments. Please check that your arguments match
- declared content type."""
- raise ApiException(status=0, reason=msg)
- # For `GET`, `HEAD`
- else:
- r = self.pool_manager.request(method, url,
- fields=query_params,
- preload_content=_preload_content,
- timeout=timeout,
- headers=headers)
- except urllib3.exceptions.SSLError as e:
- msg = "{0}\n{1}".format(type(e).__name__, str(e))
- raise ApiException(status=0, reason=msg)
-
- if _preload_content:
- r = RESTResponse(r)
-
- # log response body
- logger.debug("response body: %s", r.data)
-
- if not 200 <= r.status <= 299:
- raise ApiException(http_resp=r)
-
- return r
-
- def GET(self, url, headers=None, query_params=None, _preload_content=True,
- _request_timeout=None):
- return self.request("GET", url,
- headers=headers,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- query_params=query_params)
-
- def HEAD(self, url, headers=None, query_params=None, _preload_content=True,
- _request_timeout=None):
- return self.request("HEAD", url,
- headers=headers,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- query_params=query_params)
-
- def OPTIONS(self, url, headers=None, query_params=None, post_params=None,
- body=None, _preload_content=True, _request_timeout=None):
- return self.request("OPTIONS", url,
- headers=headers,
- query_params=query_params,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
-
- def DELETE(self, url, headers=None, query_params=None, body=None,
- _preload_content=True, _request_timeout=None):
- return self.request("DELETE", url,
- headers=headers,
- query_params=query_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
-
- def POST(self, url, headers=None, query_params=None, post_params=None,
- body=None, _preload_content=True, _request_timeout=None):
- return self.request("POST", url,
- headers=headers,
- query_params=query_params,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
-
- def PUT(self, url, headers=None, query_params=None, post_params=None,
- body=None, _preload_content=True, _request_timeout=None):
- return self.request("PUT", url,
- headers=headers,
- query_params=query_params,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
-
- def PATCH(self, url, headers=None, query_params=None, post_params=None,
- body=None, _preload_content=True, _request_timeout=None):
- return self.request("PATCH", url,
- headers=headers,
- query_params=query_params,
- post_params=post_params,
- _preload_content=_preload_content,
- _request_timeout=_request_timeout,
- body=body)
-
-
-class ApiException(Exception):
-
- def __init__(self, status=None, reason=None, http_resp=None):
- if http_resp:
- self.status = http_resp.status
- self.reason = http_resp.reason
- self.body = http_resp.data
- self.headers = http_resp.getheaders()
- else:
- self.status = status
- self.reason = reason
- self.body = None
- self.headers = None
-
- def __str__(self):
- """Custom error messages for exception"""
- error_message = "({0})\n"\
- "Reason: {1}\n".format(self.status, self.reason)
- if self.headers:
- error_message += "HTTP response headers: {0}\n".format(
- self.headers)
-
- if self.body:
- error_message += "HTTP response body: {0}\n".format(self.body)
-
- return error_message
diff --git a/.invenio/api_authentication/__pycache__/__init__.cpython-36.pyc b/.invenio/api_authentication/__pycache__/__init__.cpython-36.pyc
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diff --git a/.invenio/api_database/models/__pycache__/user_dto.cpython-36.pyc b/.invenio/api_database/models/__pycache__/user_dto.cpython-36.pyc
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diff --git a/.invenio/dev.py b/.invenio/dev.py
index 7e5ce3998b..aa0cb1af32 100644
--- a/.invenio/dev.py
+++ b/.invenio/dev.py
@@ -1,18 +1,17 @@
#!/usr/bin/env python3
-import time
-import uuid
+import json
+
+import requests
from api_authentication.api.authentication_endpoint_api import AuthenticationEndpointApi
from api_authentication.api.user_endpoint_api import UserEndpointApi
from api_container.api.container_endpoint_api import ContainerEndpointApi
from api_database.api.container_database_endpoint_api import ContainerDatabaseEndpointApi
-from api_analyse.api.analyse_endpoint_api import AnalyseEndpointApi
authentication = AuthenticationEndpointApi()
user = UserEndpointApi()
container = ContainerEndpointApi()
database = ContainerDatabaseEndpointApi()
-analyse = AnalyseEndpointApi()
# # Create account
# response = user.register({
@@ -21,19 +20,19 @@ analyse = AnalyseEndpointApi()
# 'email': 'martin.weise@tuwien.ac.at'
# })
# print('Created account with username %s' % response.username)
-
-# Create authentication
-response = authentication.authenticate_user1({
- 'username': 'mweise',
- 'password': 'fda'
-})
-container.api_client.default_headers = {
- 'Authorization': 'Bearer ' + response.token
-}
-database.api_client.default_headers = {
- 'Authorization': 'Bearer ' + response.token
-}
-
+#
+# # Create authentication
+# response = authentication.authenticate_user1({
+# 'username': 'mweise',
+# 'password': 'fda'
+# })
+# container.api_client.default_headers = {
+# 'Authorization': 'Bearer ' + response.token
+# }
+# database.api_client.default_headers = {
+# 'Authorization': 'Bearer ' + response.token
+# }
+#
# # Create container
# response = container.create1({
# 'name': 'MIR ' + str(uuid.uuid1()),
@@ -60,8 +59,9 @@ database.api_client.default_headers = {
# print('Created database with id %d' % dbid)
# Analyse Table
-response = analyse.api_analyse_determinedt_post({
+response = requests.post('http://localhost:5000/api/analyse/determinedt', json={
'filepath': '/tmp/test.csv',
})
+data = json.loads(response.content)
print('Determined data types')
print(response)
diff --git a/.invenio/requirements.txt b/.invenio/requirements.txt
index 30592e4db7..47f78a7d88 100644
--- a/.invenio/requirements.txt
+++ b/.invenio/requirements.txt
@@ -1 +1,2 @@
-invenio-client==0.1.0
\ No newline at end of file
+invenio-client==0.1.0
+six==1.16.0
\ No newline at end of file
diff --git a/fda-analyse-service/.gitignore b/fda-analyse-service/.gitignore
index ed8ebf583f..ad0f142b44 100644
--- a/fda-analyse-service/.gitignore
+++ b/fda-analyse-service/.gitignore
@@ -1 +1,27 @@
-__pycache__
\ No newline at end of file
+__pycache__
+
+.DS_Store
+.env
+.flaskenv
+*.pyc
+*.pyo
+env/
+venv/
+.venv/
+env*
+dist/
+build/
+*.egg
+*.egg-info/
+.tox/
+.cache/
+.pytest_cache/
+.idea/
+docs/_build/
+.vscode
+
+# Coverage reports
+htmlcov/
+.coverage
+.coverage.*
+*,cover
\ No newline at end of file
diff --git a/fda-analyse-service/Dockerfile b/fda-analyse-service/Dockerfile
index 7fca5435b2..1790712615 100644
--- a/fda-analyse-service/Dockerfile
+++ b/fda-analyse-service/Dockerfile
@@ -14,7 +14,7 @@ RUN pip install -r requirements.txt > /dev/null
HEALTHCHECK --interval=10s --timeout=5s --retries=12 CMD ./service_ready
-COPY ./as-yml ./
+COPY ./as-yml/ ./as-yml/
COPY ./*.py ./
COPY ./service_ready ./
diff --git a/fda-analyse-service/app.py b/fda-analyse-service/app.py
index af71535067..539b21737c 100644
--- a/fda-analyse-service/app.py
+++ b/fda-analyse-service/app.py
@@ -42,19 +42,12 @@ swagger_config = {
"headers": [],
"specs": [
{
- "title": "Database Repository Analyse Service API",
- "openapi": "3.0.1",
- "description": "Service that analyses data structures",
- "version": " 1.1.0-alpha",
"endpoint": "api-analyze",
"route": "/api-analyze.json",
"rule_filter": lambda rule: rule.endpoint.startswith('analyze'),
"model_filter": lambda tag: True, # all in
},
{
- "title": "MDB operations",
- "openapi": "3.0.1",
- "description": "Service that managed the metadata database",
"endpoint": "api-mdb",
"route": "/api-mdb.json",
"rule_filter": lambda rule: rule.endpoint.startswith('mdb'),
@@ -66,9 +59,26 @@ swagger_config = {
"specs_route": "/swagger-ui/",
}
-template = dict(
- swaggerUiPrefix=LazyString(lambda: request.environ.get("HTTP_X_SCRIPT_NAME", ""))
-)
+template = {
+ "openapi": "3.0.0",
+ "info": {
+ "title": "Database Repository Analyse Service API",
+ "description": "Service that analyses data structures",
+ "version": "1.1.0-alpha",
+ "contact": {
+ "name": "Prof. Andreas Rauber",
+ "email": "andreas.rauber@tuwien.ac.at"
+ },
+ "license": {
+ "name": "Apache 2.0",
+ "url": "https://www.apache.org/licenses/LICENSE-2.0"
+ }
+ },
+ "servers": [{
+ "url": "http://localhost:5000",
+ "description": "Generated server url"
+ }]
+}
app.json_encoder = LazyJSONEncoder
swagger = Swagger(app, config=swagger_config, template=template)
@@ -92,11 +102,11 @@ def determinedt():
separator = str(input_json['separator'])
res = determine_datatypes(filepath,enum,enum_tol,separator)
logging.info('Determined datatypes successfully: %s',res)
- return jsonify(res), 200
+ return Response(res, mimetype="application/json"), 200
except Exception as e:
logging.error(e)
res = {"success": False, "message": str(e)}
- return jsonify(res), 500
+ return Response(res, mimetype="application/json"), 500
@app.route('/api/analyse/determinepk', methods=["POST"], endpoint='analyze_determinepk')
@swag_from('as-yml/determinepk.yml')
@@ -109,11 +119,11 @@ def determinepk():
seperator = str(input_json['seperator'])
res = determine_pk(filepath,seperator)
logging.info('Determined list of primary keys: %s', res)
- return jsonify(res), 200
+ return Response(res, mimetype="application/json"), 200
except Exception as e:
logging.error(e)
res = {"success": False, "message": str(e)}
- return jsonify(res), 500
+ return Response(res, mimetype="application/json"), 500
@app.route('/api/analyse/update_mdb_col', methods=["POST"], endpoint='mdb_update_col')
@swag_from('as-yml/updatecol.yml')
@@ -125,11 +135,11 @@ def updatecol():
cid=int(input_json['cid'])
res = update_mdb_col(dbid,tid,cid)
logging.info('Update metadata database entity mdb_columns')
- return jsonify(res), 200
+ return Response(res, mimetype="application/json"), 200
except Exception as e:
logging.error(e)
res = {"success": False, "message": "Unknown error"}
- return jsonify(res), 500
+ return Response(res, mimetype="application/json"), 500
rest_server_port = 5000
eureka_client.init(eureka_server=os.getenv('EUREKA_SERVER', 'http://localhost:9090/eureka/'),
diff --git a/fda-analyse-service/requirements.txt b/fda-analyse-service/requirements.txt
index 343415c676..08560767f1 100644
--- a/fda-analyse-service/requirements.txt
+++ b/fda-analyse-service/requirements.txt
@@ -1,12 +1,12 @@
messytables==0.15.2
-pandas==1.4.3
+pandas==1.2.3
flask==2.1.2
flasgger==0.9.5
-psycopg2-binary==2.9.3
-py-eureka-client==0.11.3
-docker==5.0.3
-sqlalchemy==1.4.39
-requests==2.28.0
-gevent==21.12.0
-markupsafe==2.1.1
+psycopg2-binary==2.8.6
+py-eureka-client==0.9.1
+docker==5.0.0
+sqlalchemy==1.4.15
+requests==2.26.0
+gevent==21.8.0
+markupsafe===2.0.1
--
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