diff --git a/dbrepo-search-service/Pipfile.lock b/dbrepo-search-service/Pipfile.lock
index 0a4189531723dec8e470e010bfd71551ad0ca5ba..507877dba8a2d664e5ade5fe58431e08831418bf 100644
--- a/dbrepo-search-service/Pipfile.lock
+++ b/dbrepo-search-service/Pipfile.lock
@@ -388,7 +388,7 @@
},
"dbrepo": {
"hashes": [
- "sha256:654d487f1c0fd99b4978f5756aec4046f3e6019aeb225ecdd449768795f6e7e0"
+ "sha256:84607677b0826bb9b2fa120aacdf56d16c8d9ae423f435b2bd2c22b1c965a33c"
],
"markers": "python_version >= '3.11'",
"path": "./lib/dbrepo-1.4.7.tar.gz"
@@ -1245,11 +1245,11 @@
},
"pyparsing": {
"hashes": [
- "sha256:a6a7ee4235a3f944aa1fa2249307708f893fe5717dc603503c6c7969c070fb7c",
- "sha256:f86ec8d1a83f11977c9a6ea7598e8c27fc5cddfa5b07ea2241edbbde1d7bc032"
+ "sha256:93d9577b88da0bbea8cc8334ee8b918ed014968fd2ec383e868fb8afb1ccef84",
+ "sha256:cbf74e27246d595d9a74b186b810f6fbb86726dbf3b9532efb343f6d7294fe9c"
],
- "markers": "python_full_version >= '3.6.8'",
- "version": "==3.1.4"
+ "markers": "python_version >= '3.9'",
+ "version": "==3.2.0"
},
"pytest": {
"hashes": [
@@ -1566,11 +1566,11 @@
},
"tinydb": {
"hashes": [
- "sha256:09c4c6a239da9be676b948f1f28074cffd1cf08e7af920c1df50424cc8bee8d6",
- "sha256:1c7c507ef520c789f94f1f5786f0722a98a59a85031a2e81e2accc701721f07f"
+ "sha256:f7dfc39b8d7fda7a1ca62a8dbb449ffd340a117c1206b68c50b1a481fb95181d",
+ "sha256:f97030ee5cbc91eeadd1d7af07ab0e48ceb04aa63d4a983adbaca4cba16e86c3"
],
"markers": "python_version >= '3.8' and python_version < '4.0'",
- "version": "==4.8.1"
+ "version": "==4.8.2"
},
"tuspy": {
"hashes": [
@@ -1690,178 +1690,178 @@
},
"yarl": {
"hashes": [
- "sha256:0127bc2ea72c1eaae6808ace661f0edf222f32ffa987d37f2dbb4798288f2656",
- "sha256:0358b697abdf1f2d68038bd02ef8ddcc4813835744f79c755f8743aa485585e7",
- "sha256:06306c74f0775621a70fa5acd292119bbb6961d1f9a5f3d657a4c8c15b86f7b9",
- "sha256:06b5b462cadf59c1df28ffbb0a3971fa16b60cf0c9d59a38bf5679a986d18685",
- "sha256:097094a979af7b31520517c59179f6817b8426724343cecbec0eb3af1f8fb6cf",
- "sha256:0c791a2d42da20ac568e5c0cc9b8af313188becd203a936ad959b578dafbcebb",
- "sha256:1656a8b531a96427f26f498b7d0f19931166ff30e4344eca99bdb27faca14fc5",
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+ "sha256:d1ac2bc069f4a458634c26b101c2341b18da85cb96afe0015990507efec2e417",
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+ "sha256:eaea112aed589131f73d50d570a6864728bd7c0c66ef6c9154ed7b59f24da611",
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+ "sha256:f9ca0e6ce7774dc7830dc0cc4bb6b3eec769db667f230e7c770a628c1aa5681b",
+ "sha256:fa2bea05ff0a8fb4d8124498e00e02398f06d23cdadd0fe027d84a3f7afde31e",
+ "sha256:fbbb63bed5fcd70cd3dd23a087cd78e4675fb5a2963b8af53f945cbbca79ae16",
+ "sha256:fbda058a9a68bec347962595f50546a8a4a34fd7b0654a7b9697917dc2bf810d",
+ "sha256:ffd591e22b22f9cb48e472529db6a47203c41c2c5911ff0a52e85723196c0d75"
],
"markers": "python_version >= '3.8'",
- "version": "==1.15.0"
+ "version": "==1.15.2"
}
},
"develop": {
"coverage": {
"hashes": [
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- "sha256:9c6b0c1cafd96213a0327cf680acb39f70e452caf8e9a25aeb05316db9c07f89",
- "sha256:a5f81e68aa62bc0cfca04f7b19eaa8f9c826b53fc82ab9e2121976dc74f131f3",
- "sha256:a663b180b6669c400b4630a24cc776f23a992d38ce7ae72ede2a397ce6b0f170",
- "sha256:a7b2e437fbd8fae5bc7716b9c7ff97aecc95f0b4d56e4ca08b3c8d8adcaadb84",
- "sha256:a867d26f06bcd047ef716175b2696b315cb7571ccb951006d61ca80bbc356e9e",
- "sha256:aa68a6cdbe1bc6793a9dbfc38302c11599bbe1837392ae9b1d238b9ef3dafcf1",
- "sha256:ab31fdd643f162c467cfe6a86e9cb5f1965b632e5e65c072d90854ff486d02cf",
- "sha256:ad4ef1c56b47b6b9024b939d503ab487231df1f722065a48f4fc61832130b90e",
- "sha256:b92f9ca04b3e719d69b02dc4a69debb795af84cb7afd09c5eb5d54b4a1ae2191",
- "sha256:bb21bac7783c1bf6f4bbe68b1e0ff0d20e7e7732cfb7995bc8d96e23aa90fc7b",
- "sha256:bf4eeecc9e10f5403ec06138978235af79c9a79af494eb6b1d60a50b49ed2869",
- "sha256:bfde025e2793a22efe8c21f807d276bd1d6a4bcc5ba6f19dbdfc4e7a12160909",
- "sha256:c37faddc8acd826cfc5e2392531aba734b229741d3daec7f4c777a8f0d4993e5",
- "sha256:c71965d1ced48bf97aab79fad56df82c566b4c498ffc09c2094605727c4b7e36",
- "sha256:c9192925acc33e146864b8cf037e2ed32a91fdf7644ae875f5d46cd2ef086a5f",
- "sha256:c9df1950fb92d49970cce38100d7e7293c84ed3606eaa16ea0b6bc27175bb667",
- "sha256:cdfcf2e914e2ba653101157458afd0ad92a16731eeba9a611b5cbb3e7124e74b",
- "sha256:d03a060ac1a08e10589c27d509bbdb35b65f2d7f3f8d81cf2fa199877c7bc58a",
- "sha256:d20c3d1f31f14d6962a4e2f549c21d31e670b90f777ef4171be540fb7fb70f02",
- "sha256:e4ee15b267d2dad3e8759ca441ad450c334f3733304c55210c2a44516e8d5530",
- "sha256:e8ea055b3ea046c0f66217af65bc193bbbeca1c8661dc5fd42698db5795d2627",
- "sha256:ebabdf1c76593a09ee18c1a06cd3022919861365219ea3aca0247ededf6facd6",
- "sha256:ebc94fadbd4a3f4215993326a6a00e47d79889391f5659bf310f55fe5d9f581c",
- "sha256:ed5ac02126f74d190fa2cc14a9eb2a5d9837d5863920fa472b02eb1595cdc925",
- "sha256:f01e53575f27097d75d42de33b1b289c74b16891ce576d767ad8c48d17aeb5e0",
- "sha256:f361296ca7054f0936b02525646b2731b32c8074ba6defab524b79b2b7eeac72",
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- "sha256:fcad7d5d2bbfeae1026b395036a8aa5abf67e8038ae7e6a25c7d0f88b10a8e6a",
- "sha256:ff797320dcbff57caa6b2301c3913784a010e13b1f6cf4ab3f563f3c5e7919db"
+ "sha256:04f2189716e85ec9192df307f7c255f90e78b6e9863a03223c3b998d24a3c6c6",
+ "sha256:0c6c0f4d53ef603397fc894a895b960ecd7d44c727df42a8d500031716d4e8d2",
+ "sha256:0ca37993206402c6c35dc717f90d4c8f53568a8b80f0bf1a1b2b334f4d488fba",
+ "sha256:12f9515d875859faedb4144fd38694a761cd2a61ef9603bf887b13956d0bbfbb",
+ "sha256:1990b1f4e2c402beb317840030bb9f1b6a363f86e14e21b4212e618acdfce7f6",
+ "sha256:2341a78ae3a5ed454d524206a3fcb3cec408c2a0c7c2752cd78b606a2ff15af4",
+ "sha256:23bb63ae3f4c645d2d82fa22697364b0046fbafb6261b258a58587441c5f7bd0",
+ "sha256:27bd5f18d8f2879e45724b0ce74f61811639a846ff0e5c0395b7818fae87aec6",
+ "sha256:2dc7d6b380ca76f5e817ac9eef0c3686e7834c8346bef30b041a4ad286449990",
+ "sha256:331b200ad03dbaa44151d74daeb7da2cf382db424ab923574f6ecca7d3b30de3",
+ "sha256:365defc257c687ce3e7d275f39738dcd230777424117a6c76043459db131dd43",
+ "sha256:37be7b5ea3ff5b7c4a9db16074dc94523b5f10dd1f3b362a827af66a55198175",
+ "sha256:3c2e6fa98032fec8282f6b27e3f3986c6e05702828380618776ad794e938f53a",
+ "sha256:40e8b1983080439d4802d80b951f4a93d991ef3261f69e81095a66f86cf3c3c6",
+ "sha256:43517e1f6b19f610a93d8227e47790722c8bf7422e46b365e0469fc3d3563d97",
+ "sha256:43b32a06c47539fe275106b376658638b418c7cfdfff0e0259fbf877e845f14b",
+ "sha256:43d6a66e33b1455b98fc7312b124296dad97a2e191c80320587234a77b1b736e",
+ "sha256:4c59d6a4a4633fad297f943c03d0d2569867bd5372eb5684befdff8df8522e39",
+ "sha256:52ac29cc72ee7e25ace7807249638f94c9b6a862c56b1df015d2b2e388e51dbd",
+ "sha256:54356a76b67cf8a3085818026bb556545ebb8353951923b88292556dfa9f812d",
+ "sha256:583049c63106c0555e3ae3931edab5669668bbef84c15861421b94e121878d3f",
+ "sha256:6d99198203f0b9cb0b5d1c0393859555bc26b548223a769baf7e321a627ed4fc",
+ "sha256:6da42bbcec130b188169107ecb6ee7bd7b4c849d24c9370a0c884cf728d8e976",
+ "sha256:6e484e479860e00da1f005cd19d1c5d4a813324e5951319ac3f3eefb497cc549",
+ "sha256:70a6756ce66cd6fe8486c775b30889f0dc4cb20c157aa8c35b45fd7868255c5c",
+ "sha256:70d24936ca6c15a3bbc91ee9c7fc661132c6f4c9d42a23b31b6686c05073bde5",
+ "sha256:71967c35828c9ff94e8c7d405469a1fb68257f686bca7c1ed85ed34e7c2529c4",
+ "sha256:79644f68a6ff23b251cae1c82b01a0b51bc40c8468ca9585c6c4b1aeee570e0b",
+ "sha256:87cd2e29067ea397a47e352efb13f976eb1b03e18c999270bb50589323294c6e",
+ "sha256:8d4c6ea0f498c7c79111033a290d060c517853a7bcb2f46516f591dab628ddd3",
+ "sha256:9134032f5aa445ae591c2ba6991d10136a1f533b1d2fa8f8c21126468c5025c6",
+ "sha256:921fbe13492caf6a69528f09d5d7c7d518c8d0e7b9f6701b7719715f29a71e6e",
+ "sha256:99670790f21a96665a35849990b1df447993880bb6463a0a1d757897f30da929",
+ "sha256:9975442f2e7a5cfcf87299c26b5a45266ab0696348420049b9b94b2ad3d40234",
+ "sha256:99ded130555c021d99729fabd4ddb91a6f4cc0707df4b1daf912c7850c373b13",
+ "sha256:a3328c3e64ea4ab12b85999eb0779e6139295bbf5485f69d42cf794309e3d007",
+ "sha256:a4fb91d5f72b7e06a14ff4ae5be625a81cd7e5f869d7a54578fc271d08d58ae3",
+ "sha256:aa23ce39661a3e90eea5f99ec59b763b7d655c2cada10729ed920a38bfc2b167",
+ "sha256:aac7501ae73d4a02f4b7ac8fcb9dc55342ca98ffb9ed9f2dfb8a25d53eda0e4d",
+ "sha256:ab84a8b698ad5a6c365b08061920138e7a7dd9a04b6feb09ba1bfae68346ce6d",
+ "sha256:b4adeb878a374126f1e5cf03b87f66279f479e01af0e9a654cf6d1509af46c40",
+ "sha256:b9853509b4bf57ba7b1f99b9d866c422c9c5248799ab20e652bbb8a184a38181",
+ "sha256:bb7d5fe92bd0dc235f63ebe9f8c6e0884f7360f88f3411bfed1350c872ef2054",
+ "sha256:bca4c8abc50d38f9773c1ec80d43f3768df2e8576807d1656016b9d3eeaa96fd",
+ "sha256:c222958f59b0ae091f4535851cbb24eb57fc0baea07ba675af718fb5302dddb2",
+ "sha256:c30e42ea11badb147f0d2e387115b15e2bd8205a5ad70d6ad79cf37f6ac08c91",
+ "sha256:c3a79f56dee9136084cf84a6c7c4341427ef36e05ae6415bf7d787c96ff5eaa3",
+ "sha256:c51ef82302386d686feea1c44dbeef744585da16fcf97deea2a8d6c1556f519b",
+ "sha256:c77326300b839c44c3e5a8fe26c15b7e87b2f32dfd2fc9fee1d13604347c9b38",
+ "sha256:d33a785ea8354c480515e781554d3be582a86297e41ccbea627a5c632647f2cd",
+ "sha256:d546cfa78844b8b9c1c0533de1851569a13f87449897bbc95d698d1d3cb2a30f",
+ "sha256:da29ceabe3025a1e5a5aeeb331c5b1af686daab4ff0fb4f83df18b1180ea83e2",
+ "sha256:df8c05a0f574d480947cba11b947dc41b1265d721c3777881da2fb8d3a1ddfba",
+ "sha256:e266af4da2c1a4cbc6135a570c64577fd3e6eb204607eaff99d8e9b710003c6f",
+ "sha256:e279f3db904e3b55f520f11f983cc8dc8a4ce9b65f11692d4718ed021ec58b83",
+ "sha256:ea52bd218d4ba260399a8ae4bb6b577d82adfc4518b93566ce1fddd4a49d1dce",
+ "sha256:ebec65f5068e7df2d49466aab9128510c4867e532e07cb6960075b27658dca38",
+ "sha256:ec1e3b40b82236d100d259854840555469fad4db64f669ab817279eb95cd535c",
+ "sha256:ee77c7bef0724165e795b6b7bf9c4c22a9b8468a6bdb9c6b4281293c6b22a90f",
+ "sha256:f263b18692f8ed52c8de7f40a0751e79015983dbd77b16906e5b310a39d3ca21",
+ "sha256:f7b26757b22faf88fcf232f5f0e62f6e0fd9e22a8a5d0d5016888cdfe1f6c1c4",
+ "sha256:f7ddb920106bbbbcaf2a274d56f46956bf56ecbde210d88061824a95bdd94e92"
],
"index": "pypi",
"markers": "python_version >= '3.9'",
- "version": "==7.6.2"
+ "version": "==7.6.3"
},
"iniconfig": {
"hashes": [
diff --git a/dbrepo-search-service/init/Pipfile b/dbrepo-search-service/init/Pipfile
index 9647c2ca4e1866754e9b0d695023fb6ba252a61b..856472e12e03af5745860bb751455a50d10cf43b 100644
--- a/dbrepo-search-service/init/Pipfile
+++ b/dbrepo-search-service/init/Pipfile
@@ -9,7 +9,7 @@ opensearch-py = "~=2.2"
python-dotenv = "~=1.0"
testcontainers-opensearch = "*"
pytest = "*"
-dbrepo = {path = "./lib/dbrepo-1.4.6.tar.gz"}
+dbrepo = {path = "./lib/dbrepo-1.4.7.tar.gz"}
[dev-packages]
coverage = "*"
diff --git a/dbrepo-search-service/init/Pipfile.lock b/dbrepo-search-service/init/Pipfile.lock
index 01e860ce1156a1ad10e66eb1341ebce320578d7a..24d3e33c018a6198ae3d9921b7e8010e78d96668 100644
--- a/dbrepo-search-service/init/Pipfile.lock
+++ b/dbrepo-search-service/init/Pipfile.lock
@@ -1,7 +1,7 @@
{
"_meta": {
"hash": {
- "sha256": "f0cf0656eb5669fc13fa9bfcbff42b1d69e88a7926cdb61b343598ede594b38f"
+ "sha256": "515c4d2f5d975237560ccb1c9de5c0231c2d3b687cbf2214cd12b73ad2b82dbd"
},
"pipfile-spec": 6,
"requires": {
@@ -282,11 +282,10 @@
},
"dbrepo": {
"hashes": [
- "sha256:273c77e6b4eb5c32cfb3b852064a2dd8a09c107e385b0a539ee87640ef3d4b75",
- "sha256:409297ef9bb4687eb66c64ff185fa1d224aa393be5132d0a14d628b200de9ffa"
+ "sha256:84607677b0826bb9b2fa120aacdf56d16c8d9ae423f435b2bd2c22b1c965a33c"
],
"markers": "python_version >= '3.11'",
- "path": "./lib/dbrepo-1.4.6.tar.gz"
+ "path": "./lib/dbrepo-1.4.7.tar.gz"
},
"docker": {
"hashes": [
@@ -1004,11 +1003,11 @@
},
"tinydb": {
"hashes": [
- "sha256:09c4c6a239da9be676b948f1f28074cffd1cf08e7af920c1df50424cc8bee8d6",
- "sha256:1c7c507ef520c789f94f1f5786f0722a98a59a85031a2e81e2accc701721f07f"
+ "sha256:f7dfc39b8d7fda7a1ca62a8dbb449ffd340a117c1206b68c50b1a481fb95181d",
+ "sha256:f97030ee5cbc91eeadd1d7af07ab0e48ceb04aa63d4a983adbaca4cba16e86c3"
],
"markers": "python_version >= '3.8' and python_version < '4.0'",
- "version": "==4.8.1"
+ "version": "==4.8.2"
},
"tuspy": {
"hashes": [
@@ -1128,178 +1127,178 @@
},
"yarl": {
"hashes": [
- "sha256:0127bc2ea72c1eaae6808ace661f0edf222f32ffa987d37f2dbb4798288f2656",
- "sha256:0358b697abdf1f2d68038bd02ef8ddcc4813835744f79c755f8743aa485585e7",
- "sha256:06306c74f0775621a70fa5acd292119bbb6961d1f9a5f3d657a4c8c15b86f7b9",
- "sha256:06b5b462cadf59c1df28ffbb0a3971fa16b60cf0c9d59a38bf5679a986d18685",
- "sha256:097094a979af7b31520517c59179f6817b8426724343cecbec0eb3af1f8fb6cf",
- "sha256:0c791a2d42da20ac568e5c0cc9b8af313188becd203a936ad959b578dafbcebb",
- "sha256:1656a8b531a96427f26f498b7d0f19931166ff30e4344eca99bdb27faca14fc5",
- "sha256:18614630533ac37ec373bd8035aec8fa4dd9aedac641209c06de7e082622ff77",
- "sha256:1e5fa4c4e55cdacef1844f609bc9a02c8cd29c324a71ca1d3ee454701d4bb496",
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"markers": "python_version >= '3.9'",
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+ "version": "==7.6.3"
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diff --git a/dbrepo-search-service/init/README.md b/dbrepo-search-service/init/README.md
index 74767ea02ada906b7f7feab0e13a7c4b1fe9a7d1..a188e561c737ddcc9bb772099dcfe51e5d8e9323 100644
--- a/dbrepo-search-service/init/README.md
+++ b/dbrepo-search-service/init/README.md
@@ -4,4 +4,8 @@ Responsible for:
* Creating `database` index if not existing
* Importing database(s) from the Metadata Database
-* Exit
\ No newline at end of file
+* Exit
+
+## Development
+
+Open in `./dbrepo-search-service` directory (depends on `clients` package).
\ No newline at end of file
diff --git a/dbrepo-search-service/init/app.py b/dbrepo-search-service/init/app.py
index 24cc3f73bbc36c11943bd1069ec1a437535df2b5..3f8db4093e32389f8582f9923761bff920510c68 100644
--- a/dbrepo-search-service/init/app.py
+++ b/dbrepo-search-service/init/app.py
@@ -68,9 +68,6 @@ class App:
logging.debug(f"create instance {self.search_host}:{self.search_port}")
return self.search_instance
- def index_exists(self):
- return self._instance().indices.exists(index="database")
-
def database_exists(self, database_id: int):
try:
self._instance().get(index="database", id=database_id)
@@ -78,23 +75,18 @@ class App:
except opensearchpy.exceptions.NotFoundError:
return False
- def index_update(self, is_created: bool) -> bool:
+ def index_update(self) -> bool:
"""
:param is_created:
:return: True if the index was updated
"""
- if is_created:
+ if not self._instance().indices.exists(index="database"):
logging.debug(f"index 'database' does not exist, creating...")
with open('./database.json', 'r') as f:
self._instance().indices.create(index="database", body=json.load(f))
logging.info(f"Created index 'database'")
return True
- mapping = dict(self._instance().indices.get_mapping(index="database"))
- identifier_props = mapping["database"]["mappings"]["properties"]["identifiers"]["properties"]
- if "status" in identifier_props:
- logging.debug(f"found mapping database.identifiers.status: detected current mapping")
- return False
logging.debug(f"index 'database' exists, updating mapping...")
with open('./database.json', 'r') as f:
self._instance().indices.put_mapping(index="database", body=json.load(f))
@@ -126,7 +118,6 @@ class App:
if __name__ == "__main__":
app = App()
- create = not app.index_exists()
- update = app.index_update(is_created=create)
+ update = app.index_update()
app.save_databases(databases=app.fetch_databases())
logging.info("Finished. Exiting.")
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diff --git a/dbrepo-search-service/init/test/conftest.py b/dbrepo-search-service/init/test/conftest.py
index 2a21f689702d7f78e14e73b6170715753e32b49c..c3636a4bf9ea2bdc42ad2bd3f86e369c0e0ab138 100644
--- a/dbrepo-search-service/init/test/conftest.py
+++ b/dbrepo-search-service/init/test/conftest.py
@@ -1,6 +1,10 @@
import logging
import pytest
+import json
+
+from opensearchpy import NotFoundError
+
from app import app
from flask import current_app
@@ -30,20 +34,17 @@ def session(request):
request.addfinalizer(stop_opensearch)
return container
-# @pytest.fixture(scope="function", autouse=True)
-# def cleanup(request, session):
-# """
-# Clean up after each test by removing the buckets and re-adding them (=so they are empty again)
-# :param request: /
-# :param session: /
-# :return:
-# """
-# logging.info("[fixture] truncate buckets")
-# for bucket in ["dbrepo-upload", "dbrepo-download"]:
-# objects = []
-# for obj in session.get_client().list_objects(bucket):
-# objects.append(DeleteObject(obj.object_name))
-# logging.info(f'request to remove objects {objects}')
-# errors = session.get_client().remove_objects(bucket, objects)
-# for error in errors:
-# raise ConnectionError(f'Failed to delete object with key {error.object_name} of bucket {bucket}')
+
+@pytest.fixture(scope="function", autouse=True)
+def cleanup(request, session):
+ """
+ Clean up after each test by removing the index and re-adding it (=so it's empty again)
+ :param request: /
+ :param session: /
+ :return:
+ """
+ logging.info("[fixture] clean schema")
+ with open('./init/database.json', 'r') as f:
+ if session.get_client().indices.exists(index="database"):
+ session.get_client().indices.delete(index="database")
+ session.get_client().indices.create(index="database", body=json.load(f))
diff --git a/dbrepo-search-service/init/test/test_app.py b/dbrepo-search-service/init/test/test_app.py
index 0df10e51c74b59b995148a350998566a30a4a52e..7d92516b954cf0d6e5691028560ad49e1fdc1dad 100644
--- a/dbrepo-search-service/init/test/test_app.py
+++ b/dbrepo-search-service/init/test/test_app.py
@@ -1,49 +1,85 @@
import datetime
import unittest
-from app import app
+from dbrepo.api.dto import Database, User, UserAttributes, Container, Image, Table, Constraints, Column, ColumnType, \
+ Concept, Unit, DataType
+from app import app
from clients.opensearch_client import OpenSearchClient
+req = Database(id=1,
+ name="Test",
+ internal_name="test_tuw1",
+ creator=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ username="foo",
+ attributes=UserAttributes(theme="dark")),
+ owner=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ username="foo",
+ attributes=UserAttributes(theme="dark")),
+ contact=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ username="foo",
+ attributes=UserAttributes(theme="dark")),
+ created=datetime.datetime(2024, 3, 25, 16, tzinfo=datetime.timezone.utc),
+ exchange_name="dbrepo",
+ is_public=True,
+ container=Container(id=1,
+ name="MariaDB",
+ internal_name="mariadb",
+ host="data-db",
+ port="3306",
+ created=datetime.datetime(2024, 3, 1, 10, tzinfo=datetime.timezone.utc),
+ sidecar_host="data-db-sidecar",
+ sidecar_port=3305,
+ image=Image(id=1,
+ registry="docker.io",
+ name="mariadb",
+ version="11.1.3",
+ dialect="org.hibernate.dialect.MariaDBDialect",
+ driver_class="org.mariadb.jdbc.Driver",
+ jdbc_method="mariadb",
+ default_port=3306,
+ data_types=[
+ DataType(display_name="SERIAL", value="serial",
+ documentation="https://mariadb.com/kb/en/bigint/",
+ is_quoted=False, is_buildable=True)])),
+ tables=[Table(id=1, database_id=1, name="Data", internal_name="data",
+ creator=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ username="foo",
+ attributes=UserAttributes(theme="dark")),
+ owner=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ username="foo",
+ attributes=UserAttributes(theme="dark")),
+ created=datetime.datetime(2024, 3, 1, 10, tzinfo=datetime.timezone.utc),
+ constraints=Constraints(uniques=[], foreign_keys=[], checks=[], primary_key=[]),
+ is_versioned=True,
+ created_by="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
+ queue_name="dbrepo",
+ routing_key="dbrepo.1.1",
+ is_public=True,
+ columns=[Column(id=1, database_id=1, table_id=1, name="ID", internal_name="id",
+ column_type=ColumnType.BIGINT, is_public=True, is_null_allowed=False,
+ size=20, d=0,
+ concept=Concept(id=1, uri="http://www.wikidata.org/entity/Q2221906",
+ created=datetime.datetime(2024, 3, 1, 10,
+ tzinfo=datetime.timezone.utc)),
+ unit=Unit(id=1,
+ uri="http://www.ontology-of-units-of-measure.org/resource/om-2/degreeCelsius",
+ created=datetime.datetime(2024, 3, 1, 10,
+ tzinfo=datetime.timezone.utc)),
+ val_min=0,
+ val_max=10)]
+ )])
+
class OpenSearchClientTest(unittest.TestCase):
def test_index_exists_succeeds(self):
with app.app_context():
- client = RestClient(endpoint=self.metadata_service_endpoint)
+ client = OpenSearchClient()
# mock
client.update_database(database_id=1, data=req)
# test
- req.tables = [Table(id=1,
- name="Test Table",
- internal_name="test_table",
- queue_name="dbrepo",
- routing_key="dbrepo.test_tuw1.test_table",
- is_public=True,
- database_id=req.id,
- constraints=Constraints(uniques=[], foreign_keys=[], checks=[],
- primary_key=[PrimaryKey(id=1,
- table=TableMinimal(id=1, database_id=1),
- column=ColumnMinimal(id=1, table_id=1,
- database_id=1))]),
- is_versioned=True,
- created_by="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
- creator=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
- username="foo",
- attributes=UserAttributes(theme="dark")),
- owner=User(id="c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502",
- username="foo",
- attributes=UserAttributes(theme="dark")),
- created=datetime.datetime(2024, 4, 25, 17, 44, tzinfo=datetime.timezone.utc),
- columns=[Column(id=1,
- name="ID",
- internal_name="id",
- database_id=req.id,
- table_id=1,
- column_type=ColumnType.BIGINT,
- is_public=True,
- is_null_allowed=False)])]
database = client.update_database(database_id=1, data=req)
self.assertEqual(1, database.id)
self.assertEqual("Test", database.name)
@@ -66,10 +102,10 @@ class OpenSearchClientTest(unittest.TestCase):
# ...
self.assertEqual(1, len(database.tables))
self.assertEqual(1, database.tables[0].id)
- self.assertEqual("Test Table", database.tables[0].name)
- self.assertEqual("test_table", database.tables[0].internal_name)
+ self.assertEqual("Data", database.tables[0].name)
+ self.assertEqual("data", database.tables[0].internal_name)
self.assertEqual("dbrepo", database.tables[0].queue_name)
- self.assertEqual("dbrepo.test_tuw1.test_table", database.tables[0].routing_key)
+ self.assertEqual("dbrepo.1.1", database.tables[0].routing_key)
self.assertEqual(True, database.tables[0].is_public)
self.assertEqual(1, database.tables[0].database_id)
self.assertEqual(True, database.tables[0].is_versioned)
@@ -80,7 +116,7 @@ class OpenSearchClientTest(unittest.TestCase):
self.assertEqual("c6b71ef5-2d2f-48b2-9d79-b8f23a3a0502", database.tables[0].owner.id)
self.assertEqual("foo", database.tables[0].owner.username)
self.assertEqual("dark", database.tables[0].owner.attributes.theme)
- self.assertEqual(datetime.datetime(2024, 4, 25, 17, 44, tzinfo=datetime.timezone.utc),
+ self.assertEqual(datetime.datetime(2024, 3, 1, 10, tzinfo=datetime.timezone.utc),
database.tables[0].created)
self.assertEqual(1, len(database.tables[0].columns))
self.assertEqual(1, database.tables[0].columns[0].id)
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diff --git a/dbrepo-search-service/test.sh b/dbrepo-search-service/test.sh
new file mode 100644
index 0000000000000000000000000000000000000000..b7d1ea07b7383f61390ddf602b11c0d0b6bca04f
--- /dev/null
+++ b/dbrepo-search-service/test.sh
@@ -0,0 +1,8 @@
+#!/bin/bash
+cd ./dbrepo-search-service
+pip install pipenv
+pipenv install --dev
+coverage run -m pytest ./test/test_opensearch_client.py
+echo "[INFO] Start testing ./init"
+(cd ./init && pipenv install --dev)
+coverage run -m pytest ./init/test/test_app.py
\ No newline at end of file