From 45ffc7998fb1ed9f9022c3065f09674e58257ad1 Mon Sep 17 00:00:00 2001 From: Martin Weise <martin.weise@tuwien.ac.at> Date: Tue, 24 Sep 2024 21:39:47 +0200 Subject: [PATCH] Updated helm schema --- dbrepo-metadata-db/1_setup-schema.sql | 1128 ++++++++--------- helm/dbrepo/templates/auth-configmap.yaml | 8 +- helm/dbrepo/templates/metadata-configmap.yaml | 9 +- 3 files changed, 575 insertions(+), 570 deletions(-) diff --git a/dbrepo-metadata-db/1_setup-schema.sql b/dbrepo-metadata-db/1_setup-schema.sql index 47ee3a95e2..272836d4c2 100644 --- a/dbrepo-metadata-db/1_setup-schema.sql +++ b/dbrepo-metadata-db/1_setup-schema.sql @@ -1,564 +1,564 @@ -BEGIN; - -CREATE TABLE IF NOT EXISTS `mdb_users` -( - id character varying(36) NOT NULL, - username character varying(255) NOT NULL, - firstname character varying(255), - lastname character varying(255), - email character varying(255) NOT NULL, - orcid character varying(255), - affiliation character varying(255), - mariadb_password character varying(255) NOT NULL, - theme character varying(255) NOT NULL default ('light'), - language character varying(3) NOT NULL default ('en'), - PRIMARY KEY (id), - UNIQUE (username), - UNIQUE (email) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_images` -( - id bigint NOT NULL AUTO_INCREMENT, - registry character varying(255) NOT NULL DEFAULT 'docker.io', - name character varying(255) NOT NULL, - version character varying(255) NOT NULL, - default_port integer NOT NULL, - dialect character varying(255) NOT NULL, - driver_class character varying(255) NOT NULL, - jdbc_method character varying(255) NOT NULL, - is_default BOOLEAN NOT NULL DEFAULT FALSE, - created timestamp NOT NULL DEFAULT NOW(), - last_modified timestamp, - PRIMARY KEY (id), - UNIQUE (name, version), - UNIQUE (is_default) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_images_date` -( - id bigint NOT NULL AUTO_INCREMENT, - iid bigint NOT NULL, - database_format character varying(255) NOT NULL, - unix_format character varying(255) NOT NULL, - example character varying(255) NOT NULL, - has_time boolean NOT NULL, - created_at timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (id), - FOREIGN KEY (iid) REFERENCES mdb_images (id), - UNIQUE (database_format, unix_format, example) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_containers` -( - id bigint NOT NULL AUTO_INCREMENT, - internal_name character varying(255) NOT NULL, - name character varying(255) NOT NULL, - host character varying(255) NOT NULL, - port integer NOT NULL default 3306, - ui_host character varying(255) NOT NULL default host, - ui_port integer NOT NULL default port, - ui_additional_flags text, - sidecar_host character varying(255), - sidecar_port integer, - image_id bigint NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - last_modified timestamp, - privileged_username character varying(255) NOT NULL, - privileged_password character varying(255) NOT NULL, - quota integer NOT NULL DEFAULT 50, - PRIMARY KEY (id), - FOREIGN KEY (image_id) REFERENCES mdb_images (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_data` -( - ID bigint NOT NULL AUTO_INCREMENT, - PROVENANCE text, - FileEncoding text, - FileType character varying(100), - Version text, - Seperator text, - PRIMARY KEY (ID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_licenses` -( - identifier character varying(255) NOT NULL, - uri text NOT NULL, - description text NOT NULL, - PRIMARY KEY (identifier), - UNIQUE (uri(200)) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_databases` -( - id bigint NOT NULL AUTO_INCREMENT, - cid bigint NOT NULL, - name character varying(255) NOT NULL, - internal_name character varying(255) NOT NULL, - exchange_name character varying(255) NOT NULL, - description text, - engine character varying(20), - is_public boolean NOT NULL DEFAULT TRUE, - image longblob, - created_by character varying(36), - owned_by character varying(36), - contact_person character varying(36), - created timestamp NOT NULL DEFAULT NOW(), - last_modified timestamp, - PRIMARY KEY (id), - FOREIGN KEY (cid) REFERENCES mdb_containers (id) /* currently we only support one-to-one */, - FOREIGN KEY (created_by) REFERENCES mdb_users (id), - FOREIGN KEY (owned_by) REFERENCES mdb_users (id), - FOREIGN KEY (contact_person) REFERENCES mdb_users (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_databases_subjects` -( - dbid BIGINT NOT NULL, - subjects character varying(255) NOT NULL, - PRIMARY KEY (dbid, subjects) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_tables` -( - ID bigint NOT NULL AUTO_INCREMENT, - tDBID bigint NOT NULL, - tName VARCHAR(64) NOT NULL, - internal_name VARCHAR(64) NOT NULL, - queue_name VARCHAR(255) NOT NULL, - routing_key VARCHAR(255), - tDescription VARCHAR(2048), - num_rows BIGINT, - data_length BIGINT, - max_data_length BIGINT, - avg_row_length BIGINT, - `separator` CHAR(1), - quote CHAR(1), - element_null VARCHAR(50), - skip_lines BIGINT, - element_true VARCHAR(50), - element_false VARCHAR(50), - Version TEXT, - created timestamp NOT NULL DEFAULT NOW(), - versioned boolean not null default true, - created_by character varying(36) NOT NULL, - owned_by character varying(36) NOT NULL, - last_modified timestamp, - PRIMARY KEY (ID), - UNIQUE (tDBID, internal_name), - FOREIGN KEY (tDBID) REFERENCES mdb_databases (id), - FOREIGN KEY (created_by) REFERENCES mdb_users (id), - FOREIGN KEY (owned_by) REFERENCES mdb_users (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns` -( - ID BIGINT NOT NULL AUTO_INCREMENT, - tID BIGINT NOT NULL, - dfID BIGINT, - cName VARCHAR(64), - internal_name VARCHAR(64) NOT NULL, - Datatype ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'), - length BIGINT NULL, - ordinal_position INTEGER NOT NULL, - index_length BIGINT NULL, - description VARCHAR(2048), - size BIGINT, - d BIGINT, - auto_generated BOOLEAN DEFAULT false, - is_null_allowed BOOLEAN NOT NULL DEFAULT true, - val_min NUMERIC NULL, - val_max NUMERIC NULL, - mean NUMERIC NULL, - median NUMERIC NULL, - std_dev Numeric NULL, - created timestamp NOT NULL DEFAULT NOW(), - last_modified timestamp, - FOREIGN KEY (tID) REFERENCES mdb_tables (ID) ON DELETE CASCADE, - PRIMARY KEY (ID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_enums` -( - id bigint NOT NULL AUTO_INCREMENT, - column_id bigint NOT NULL, - value CHARACTER VARYING(255) NOT NULL, - FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE, - PRIMARY KEY (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_sets` -( - id bigint NOT NULL AUTO_INCREMENT, - column_id bigint NOT NULL, - value CHARACTER VARYING(255) NOT NULL, - FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE, - PRIMARY KEY (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_nom` -( - tID bigint, - cID bigint, - maxlength INTEGER, - last_modified timestamp, - created timestamp NOT NULL DEFAULT NOW(), - FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID), - PRIMARY KEY (tID, cID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_cat` -( - tID bigint, - cID bigint, - num_cat INTEGER, - -- cat_array TEXT[], - last_modified timestamp, - created timestamp NOT NULL DEFAULT NOW(), - FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID), - PRIMARY KEY (tID, cID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key` -( - fkid BIGINT NOT NULL AUTO_INCREMENT, - tid BIGINT NOT NULL, - rtid BIGINT NOT NULL, - name VARCHAR(255) NOT NULL, - on_update VARCHAR(50) NULL, - on_delete VARCHAR(50) NULL, - position INT NULL, - PRIMARY KEY (fkid), - FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE, - FOREIGN KEY (rtid) REFERENCES mdb_tables (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_constraints_primary_key` -( - pkid BIGINT NOT NULL AUTO_INCREMENT, - tID BIGINT NOT NULL, - cid BIGINT NOT NULL, - PRIMARY KEY (pkid), - FOREIGN KEY (tID) REFERENCES mdb_tables (id) ON DELETE CASCADE, - FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key_reference` -( - id BIGINT NOT NULL AUTO_INCREMENT, - fkid BIGINT NOT NULL, - cid BIGINT NOT NULL, - rcid BIGINT NOT NULL, - PRIMARY KEY (id), - UNIQUE (fkid, cid, rcid), - FOREIGN KEY (fkid) REFERENCES mdb_constraints_foreign_key (fkid) ON UPDATE CASCADE, - FOREIGN KEY (cid) REFERENCES mdb_columns (id), - FOREIGN KEY (rcid) REFERENCES mdb_columns (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_constraints_unique` -( - uid BIGINT NOT NULL AUTO_INCREMENT, - name VARCHAR(255) NOT NULL, - tid BIGINT NOT NULL, - position INT NULL, - PRIMARY KEY (uid), - FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE -); - -CREATE TABLE IF NOT EXISTS `mdb_constraints_unique_columns` -( - id BIGINT NOT NULL AUTO_INCREMENT, - uid BIGINT NOT NULL, - cid BIGINT NOT NULL, - PRIMARY KEY (id), - FOREIGN KEY (uid) REFERENCES mdb_constraints_unique (uid), - FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_constraints_checks` -( - id BIGINT NOT NULL AUTO_INCREMENT, - tid BIGINT NOT NULL, - checks VARCHAR(255) NOT NULL, - PRIMARY KEY (id), - FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE -) WITH SYSTEM VERSIONING; - - -CREATE TABLE IF NOT EXISTS `mdb_concepts` -( - id bigint NOT NULL AUTO_INCREMENT, - uri text not null, - name VARCHAR(255) null, - description TEXT null, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (id), - UNIQUE (uri(200)) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_units` -( - id bigint NOT NULL AUTO_INCREMENT, - uri text not null, - name VARCHAR(255) null, - description TEXT null, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (id), - UNIQUE (uri(200)) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_concepts` -( - id bigint NOT NULL, - cID bigint NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (id, cid), - FOREIGN KEY (cID) REFERENCES mdb_columns (ID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_columns_units` -( - id bigint NOT NULL, - cID bigint NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (id, cID), - FOREIGN KEY (cID) REFERENCES mdb_columns (ID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_view` -( - id bigint NOT NULL AUTO_INCREMENT, - vdbid bigint NOT NULL, - vName VARCHAR(64) NOT NULL, - internal_name VARCHAR(64) NOT NULL, - Query TEXT NOT NULL, - query_hash VARCHAR(255) NOT NULL, - Public BOOLEAN NOT NULL, - InitialView BOOLEAN NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - last_modified timestamp, - created_by character varying(36) NOT NULL, - PRIMARY KEY (id), - FOREIGN KEY (vdbid) REFERENCES mdb_databases (id), - FOREIGN KEY (created_by) REFERENCES mdb_users (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_banner_messages` -( - id bigint NOT NULL AUTO_INCREMENT, - type ENUM ('ERROR', 'WARNING', 'INFO') NOT NULL default 'INFO', - message TEXT NOT NULL, - link TEXT NULL, - link_text VARCHAR(255) NULL, - display_start timestamp NULL, - display_end timestamp NULL, - PRIMARY KEY (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_ontologies` -( - id bigint NOT NULL AUTO_INCREMENT, - prefix VARCHAR(8) NOT NULL, - uri TEXT NOT NULL, - uri_pattern TEXT, - sparql_endpoint TEXT NULL, - rdf_path TEXT NULL, - last_modified timestamp, - created timestamp NOT NULL DEFAULT NOW(), - UNIQUE (prefix), - UNIQUE (uri(200)), - PRIMARY KEY (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_view_columns` -( - id BIGINT NOT NULL AUTO_INCREMENT, - view_id BIGINT NOT NULL, - dfID BIGINT, - name VARCHAR(64), - internal_name VARCHAR(64) NOT NULL, - column_type ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'), - ordinal_position INTEGER NOT NULL, - size BIGINT, - d BIGINT, - auto_generated BOOLEAN DEFAULT false, - is_null_allowed BOOLEAN NOT NULL DEFAULT true, - PRIMARY KEY (id), - FOREIGN KEY (view_id) REFERENCES mdb_view (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifiers` -( - id BIGINT NOT NULL AUTO_INCREMENT, - dbid BIGINT NOT NULL, - qid BIGINT, - vid BIGINT, - tid BIGINT, - publisher VARCHAR(255) NOT NULL, - language VARCHAR(2), - publication_year INTEGER NOT NULL, - publication_month INTEGER, - publication_day INTEGER, - identifier_type ENUM ('DATABASE', 'SUBSET', 'VIEW', 'TABLE') NOT NULL, - status ENUM ('DRAFT', 'PUBLISHED') NOT NULL DEFAULT ('PUBLISHED'), - query TEXT, - query_normalized TEXT, - query_hash VARCHAR(255), - execution TIMESTAMP, - result_hash VARCHAR(255), - result_number BIGINT, - doi VARCHAR(255), - created TIMESTAMP NOT NULL DEFAULT NOW(), - created_by VARCHAR(36) NOT NULL, - last_modified TIMESTAMP, - PRIMARY KEY (id), /* must be a single id from persistent identifier concept */ - FOREIGN KEY (dbid) REFERENCES mdb_databases (id), - FOREIGN KEY (created_by) REFERENCES mdb_users (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifier_licenses` -( - pid bigint NOT NULL, - license_id VARCHAR(255) NOT NULL, - PRIMARY KEY (pid, license_id), - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id), - FOREIGN KEY (license_id) REFERENCES mdb_licenses (identifier) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifier_titles` -( - id bigint NOT NULL AUTO_INCREMENT, - pid bigint NOT NULL, - title text NOT NULL, - title_type ENUM ('ALTERNATIVE_TITLE', 'SUBTITLE', 'TRANSLATED_TITLE', 'OTHER'), - language VARCHAR(2), - PRIMARY KEY (id), - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifier_funders` -( - id bigint NOT NULL AUTO_INCREMENT, - pid bigint NOT NULL, - funder_name VARCHAR(255) NOT NULL, - funder_identifier TEXT, - funder_identifier_type ENUM ('CROSSREF_FUNDER_ID', 'GRID', 'ISNI', 'ROR', 'OTHER'), - scheme_uri text, - award_number VARCHAR(255), - award_title text, - language VARCHAR(255), - PRIMARY KEY (id), - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifier_descriptions` -( - id bigint NOT NULL AUTO_INCREMENT, - pid bigint NOT NULL, - description text NOT NULL, - description_type ENUM ('ABSTRACT', 'METHODS', 'SERIES_INFORMATION', 'TABLE_OF_CONTENTS', 'TECHNICAL_INFO', 'OTHER'), - language VARCHAR(2), - PRIMARY KEY (id), - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_related_identifiers` -( - id bigint NOT NULL AUTO_INCREMENT, - pid bigint NOT NULL, - value varchar(255) NOT NULL, - type varchar(255) NOT NULL, - relation varchar(255) NOT NULL, - PRIMARY KEY (id), /* must be a single id from persistent identifier concept */ - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id), - UNIQUE (pid, value) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_identifier_creators` -( - id bigint NOT NULL AUTO_INCREMENT, - pid bigint NOT NULL, - given_names text, - family_name text, - creator_name VARCHAR(255) NOT NULL, - name_type ENUM ('PERSONAL', 'ORGANIZATIONAL') default 'PERSONAL', - name_identifier text, - name_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI', 'ORCID'), - name_identifier_scheme_uri text, - affiliation VARCHAR(255), - affiliation_identifier text, - affiliation_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI'), - affiliation_identifier_scheme_uri text, - PRIMARY KEY (id), - FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_update` -( - uUserID character varying(255) NOT NULL, - uDBID bigint NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (uUserID, uDBID), - FOREIGN KEY (uDBID) REFERENCES mdb_databases (id) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_access` -( - aUserID character varying(255) NOT NULL, - aDBID bigint REFERENCES mdb_databases (id), - attime TIMESTAMP, - download BOOLEAN, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (aUserID, aDBID) -) WITH SYSTEM VERSIONING; - -CREATE TABLE IF NOT EXISTS `mdb_have_access` -( - user_id character varying(36) NOT NULL, - database_id bigint REFERENCES mdb_databases (id), - access_type ENUM ('READ', 'WRITE_OWN', 'WRITE_ALL') NOT NULL, - created timestamp NOT NULL DEFAULT NOW(), - PRIMARY KEY (user_id, database_id), - FOREIGN KEY (user_id) REFERENCES mdb_users (id) -) WITH SYSTEM VERSIONING; - -COMMIT; -BEGIN; - -INSERT INTO `mdb_licenses` (identifier, uri, description) -VALUES ('CC0-1.0', 'https://creativecommons.org/publicdomain/zero/1.0/legalcode', - 'CC0 waives copyright interest in a work you''ve created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach.'), - ('CC-BY-4.0', 'https://creativecommons.org/licenses/by/4.0/legalcode', - 'The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited.'); - -INSERT INTO `mdb_images` (name, registry, version, default_port, dialect, driver_class, jdbc_method) -VALUES ('mariadb', 'docker.io', '11.1.3', 3306, 'org.hibernate.dialect.MariaDBDialect', 'org.mariadb.jdbc.Driver', - 'mariadb'); - -INSERT INTO `mdb_images_date` (iid, database_format, unix_format, example, has_time) -VALUES (1, '%Y-%c-%d %H:%i:%S.%f', 'yyyy-MM-dd HH:mm:ss.SSSSSS', '2022-01-30 13:44:25.499', true), - (1, '%Y-%c-%d %H:%i:%S', 'yyyy-MM-dd HH:mm:ss', '2022-01-30 13:44:25', true), - (1, '%Y-%c-%d', 'yyyy-MM-dd', '2022-01-30', false), - (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true), - (1, '%d.%c.%Y', 'dd.MM.yyyy', '30.01.2022', false); - -INSERT INTO `mdb_ontologies` (prefix, uri, uri_pattern, sparql_endpoint, rdf_path) -VALUES ('om', 'http://www.ontology-of-units-of-measure.org/resource/om-2/', - 'http://www.ontology-of-units-of-measure.org/resource/om-2/.*', null, 'rdf/om-2.0.rdf'), - ('wd', 'http://www.wikidata.org/', 'http://www.wikidata.org/entity/.*', 'https://query.wikidata.org/sparql', - null), - ('mo', 'http://purl.org/ontology/mo/', 'http://purl.org/ontology/mo/.*', null, null), - ('dc', 'http://purl.org/dc/elements/1.1/', null, null, null), - ('xsd', 'http://www.w3.org/2001/XMLSchema#', null, null, null), - ('tl', 'http://purl.org/NET/c4dm/timeline.owl#', null, null, null), - ('foaf', 'http://xmlns.com/foaf/0.1/', null, null, null), - ('schema', 'http://schema.org/', null, null, null), - ('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', null, null, null), - ('rdfs', 'http://www.w3.org/2000/01/rdf-schema#', null, null, null), - ('owl', 'http://www.w3.org/2002/07/owl#', null, null, null), - ('prov', 'http://www.w3.org/ns/prov#', null, null, null), - ('db', 'http://dbpedia.org', 'http://dbpedia.org/ontology/.*', 'http://dbpedia.org/sparql', null); -COMMIT; + BEGIN; + + CREATE TABLE IF NOT EXISTS `mdb_users` + ( + id character varying(36) NOT NULL, + username character varying(255) NOT NULL, + firstname character varying(255), + lastname character varying(255), + email character varying(255) NOT NULL, + orcid character varying(255), + affiliation character varying(255), + mariadb_password character varying(255) NOT NULL, + theme character varying(255) NOT NULL default ('light'), + language character varying(3) NOT NULL default ('en'), + PRIMARY KEY (id), + UNIQUE (username), + UNIQUE (email) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_images` + ( + id bigint NOT NULL AUTO_INCREMENT, + registry character varying(255) NOT NULL DEFAULT 'docker.io', + name character varying(255) NOT NULL, + version character varying(255) NOT NULL, + default_port integer NOT NULL, + dialect character varying(255) NOT NULL, + driver_class character varying(255) NOT NULL, + jdbc_method character varying(255) NOT NULL, + is_default BOOLEAN NOT NULL DEFAULT FALSE, + created timestamp NOT NULL DEFAULT NOW(), + last_modified timestamp, + PRIMARY KEY (id), + UNIQUE (name, version), + UNIQUE (is_default) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_images_date` + ( + id bigint NOT NULL AUTO_INCREMENT, + iid bigint NOT NULL, + database_format character varying(255) NOT NULL, + unix_format character varying(255) NOT NULL, + example character varying(255) NOT NULL, + has_time boolean NOT NULL, + created_at timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (id), + FOREIGN KEY (iid) REFERENCES mdb_images (id), + UNIQUE (database_format, unix_format, example) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_containers` + ( + id bigint NOT NULL AUTO_INCREMENT, + internal_name character varying(255) NOT NULL, + name character varying(255) NOT NULL, + host character varying(255) NOT NULL, + port integer NOT NULL default 3306, + ui_host character varying(255) NOT NULL default host, + ui_port integer NOT NULL default port, + ui_additional_flags text, + sidecar_host character varying(255), + sidecar_port integer, + image_id bigint NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + last_modified timestamp, + privileged_username character varying(255) NOT NULL, + privileged_password character varying(255) NOT NULL, + quota integer NOT NULL DEFAULT 50, + PRIMARY KEY (id), + FOREIGN KEY (image_id) REFERENCES mdb_images (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_data` + ( + ID bigint NOT NULL AUTO_INCREMENT, + PROVENANCE text, + FileEncoding text, + FileType character varying(100), + Version text, + Seperator text, + PRIMARY KEY (ID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_licenses` + ( + identifier character varying(255) NOT NULL, + uri text NOT NULL, + description text NOT NULL, + PRIMARY KEY (identifier), + UNIQUE (uri(200)) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_databases` + ( + id bigint NOT NULL AUTO_INCREMENT, + cid bigint NOT NULL, + name character varying(255) NOT NULL, + internal_name character varying(255) NOT NULL, + exchange_name character varying(255) NOT NULL, + description text, + engine character varying(20), + is_public boolean NOT NULL DEFAULT TRUE, + image longblob, + created_by character varying(36), + owned_by character varying(36), + contact_person character varying(36), + created timestamp NOT NULL DEFAULT NOW(), + last_modified timestamp, + PRIMARY KEY (id), + FOREIGN KEY (cid) REFERENCES mdb_containers (id) /* currently we only support one-to-one */, + FOREIGN KEY (created_by) REFERENCES mdb_users (id), + FOREIGN KEY (owned_by) REFERENCES mdb_users (id), + FOREIGN KEY (contact_person) REFERENCES mdb_users (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_databases_subjects` + ( + dbid BIGINT NOT NULL, + subjects character varying(255) NOT NULL, + PRIMARY KEY (dbid, subjects) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_tables` + ( + ID bigint NOT NULL AUTO_INCREMENT, + tDBID bigint NOT NULL, + tName VARCHAR(64) NOT NULL, + internal_name VARCHAR(64) NOT NULL, + queue_name VARCHAR(255) NOT NULL, + routing_key VARCHAR(255), + tDescription VARCHAR(2048), + num_rows BIGINT, + data_length BIGINT, + max_data_length BIGINT, + avg_row_length BIGINT, + `separator` CHAR(1), + quote CHAR(1), + element_null VARCHAR(50), + skip_lines BIGINT, + element_true VARCHAR(50), + element_false VARCHAR(50), + Version TEXT, + created timestamp NOT NULL DEFAULT NOW(), + versioned boolean not null default true, + created_by character varying(36) NOT NULL, + owned_by character varying(36) NOT NULL, + last_modified timestamp, + PRIMARY KEY (ID), + UNIQUE (tDBID, internal_name), + FOREIGN KEY (tDBID) REFERENCES mdb_databases (id), + FOREIGN KEY (created_by) REFERENCES mdb_users (id), + FOREIGN KEY (owned_by) REFERENCES mdb_users (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns` + ( + ID BIGINT NOT NULL AUTO_INCREMENT, + tID BIGINT NOT NULL, + dfID BIGINT, + cName VARCHAR(64), + internal_name VARCHAR(64) NOT NULL, + Datatype ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'), + length BIGINT NULL, + ordinal_position INTEGER NOT NULL, + index_length BIGINT NULL, + description VARCHAR(2048), + size BIGINT, + d BIGINT, + auto_generated BOOLEAN DEFAULT false, + is_null_allowed BOOLEAN NOT NULL DEFAULT true, + val_min NUMERIC NULL, + val_max NUMERIC NULL, + mean NUMERIC NULL, + median NUMERIC NULL, + std_dev Numeric NULL, + created timestamp NOT NULL DEFAULT NOW(), + last_modified timestamp, + FOREIGN KEY (tID) REFERENCES mdb_tables (ID) ON DELETE CASCADE, + PRIMARY KEY (ID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_enums` + ( + id bigint NOT NULL AUTO_INCREMENT, + column_id bigint NOT NULL, + value CHARACTER VARYING(255) NOT NULL, + FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE, + PRIMARY KEY (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_sets` + ( + id bigint NOT NULL AUTO_INCREMENT, + column_id bigint NOT NULL, + value CHARACTER VARYING(255) NOT NULL, + FOREIGN KEY (column_id) REFERENCES mdb_columns (ID) ON DELETE CASCADE, + PRIMARY KEY (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_nom` + ( + tID bigint, + cID bigint, + maxlength INTEGER, + last_modified timestamp, + created timestamp NOT NULL DEFAULT NOW(), + FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID), + PRIMARY KEY (tID, cID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_cat` + ( + tID bigint, + cID bigint, + num_cat INTEGER, + -- cat_array TEXT[], + last_modified timestamp, + created timestamp NOT NULL DEFAULT NOW(), + FOREIGN KEY (tID, cID) REFERENCES mdb_columns (tID, ID), + PRIMARY KEY (tID, cID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key` + ( + fkid BIGINT NOT NULL AUTO_INCREMENT, + tid BIGINT NOT NULL, + rtid BIGINT NOT NULL, + name VARCHAR(255) NOT NULL, + on_update VARCHAR(50) NULL, + on_delete VARCHAR(50) NULL, + position INT NULL, + PRIMARY KEY (fkid), + FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE, + FOREIGN KEY (rtid) REFERENCES mdb_tables (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_constraints_primary_key` + ( + pkid BIGINT NOT NULL AUTO_INCREMENT, + tID BIGINT NOT NULL, + cid BIGINT NOT NULL, + PRIMARY KEY (pkid), + FOREIGN KEY (tID) REFERENCES mdb_tables (id) ON DELETE CASCADE, + FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_constraints_foreign_key_reference` + ( + id BIGINT NOT NULL AUTO_INCREMENT, + fkid BIGINT NOT NULL, + cid BIGINT NOT NULL, + rcid BIGINT NOT NULL, + PRIMARY KEY (id), + UNIQUE (fkid, cid, rcid), + FOREIGN KEY (fkid) REFERENCES mdb_constraints_foreign_key (fkid) ON UPDATE CASCADE, + FOREIGN KEY (cid) REFERENCES mdb_columns (id), + FOREIGN KEY (rcid) REFERENCES mdb_columns (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_constraints_unique` + ( + uid BIGINT NOT NULL AUTO_INCREMENT, + name VARCHAR(255) NOT NULL, + tid BIGINT NOT NULL, + position INT NULL, + PRIMARY KEY (uid), + FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE + ); + + CREATE TABLE IF NOT EXISTS `mdb_constraints_unique_columns` + ( + id BIGINT NOT NULL AUTO_INCREMENT, + uid BIGINT NOT NULL, + cid BIGINT NOT NULL, + PRIMARY KEY (id), + FOREIGN KEY (uid) REFERENCES mdb_constraints_unique (uid), + FOREIGN KEY (cid) REFERENCES mdb_columns (id) ON DELETE CASCADE + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_constraints_checks` + ( + id BIGINT NOT NULL AUTO_INCREMENT, + tid BIGINT NOT NULL, + checks VARCHAR(255) NOT NULL, + PRIMARY KEY (id), + FOREIGN KEY (tid) REFERENCES mdb_tables (id) ON DELETE CASCADE + ) WITH SYSTEM VERSIONING; + + + CREATE TABLE IF NOT EXISTS `mdb_concepts` + ( + id bigint NOT NULL AUTO_INCREMENT, + uri text not null, + name VARCHAR(255) null, + description TEXT null, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (id), + UNIQUE (uri(200)) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_units` + ( + id bigint NOT NULL AUTO_INCREMENT, + uri text not null, + name VARCHAR(255) null, + description TEXT null, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (id), + UNIQUE (uri(200)) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_concepts` + ( + id bigint NOT NULL, + cID bigint NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (id, cid), + FOREIGN KEY (cID) REFERENCES mdb_columns (ID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_columns_units` + ( + id bigint NOT NULL, + cID bigint NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (id, cID), + FOREIGN KEY (cID) REFERENCES mdb_columns (ID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_view` + ( + id bigint NOT NULL AUTO_INCREMENT, + vdbid bigint NOT NULL, + vName VARCHAR(64) NOT NULL, + internal_name VARCHAR(64) NOT NULL, + Query TEXT NOT NULL, + query_hash VARCHAR(255) NOT NULL, + Public BOOLEAN NOT NULL, + InitialView BOOLEAN NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + last_modified timestamp, + created_by character varying(36) NOT NULL, + PRIMARY KEY (id), + FOREIGN KEY (vdbid) REFERENCES mdb_databases (id), + FOREIGN KEY (created_by) REFERENCES mdb_users (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_banner_messages` + ( + id bigint NOT NULL AUTO_INCREMENT, + type ENUM ('ERROR', 'WARNING', 'INFO') NOT NULL default 'INFO', + message TEXT NOT NULL, + link TEXT NULL, + link_text VARCHAR(255) NULL, + display_start timestamp NULL, + display_end timestamp NULL, + PRIMARY KEY (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_ontologies` + ( + id bigint NOT NULL AUTO_INCREMENT, + prefix VARCHAR(8) NOT NULL, + uri TEXT NOT NULL, + uri_pattern TEXT, + sparql_endpoint TEXT NULL, + rdf_path TEXT NULL, + last_modified timestamp, + created timestamp NOT NULL DEFAULT NOW(), + UNIQUE (prefix), + UNIQUE (uri(200)), + PRIMARY KEY (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_view_columns` + ( + id BIGINT NOT NULL AUTO_INCREMENT, + view_id BIGINT NOT NULL, + dfID BIGINT, + name VARCHAR(64), + internal_name VARCHAR(64) NOT NULL, + column_type ENUM ('CHAR','VARCHAR','BINARY','VARBINARY','TINYBLOB','TINYTEXT','TEXT','BLOB','MEDIUMTEXT','MEDIUMBLOB','LONGTEXT','LONGBLOB','ENUM','SET','BIT','TINYINT','BOOL','SMALLINT','MEDIUMINT','INT','BIGINT','FLOAT','DOUBLE','DECIMAL','DATE','DATETIME','TIMESTAMP','TIME','YEAR'), + ordinal_position INTEGER NOT NULL, + size BIGINT, + d BIGINT, + auto_generated BOOLEAN DEFAULT false, + is_null_allowed BOOLEAN NOT NULL DEFAULT true, + PRIMARY KEY (id), + FOREIGN KEY (view_id) REFERENCES mdb_view (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifiers` + ( + id BIGINT NOT NULL AUTO_INCREMENT, + dbid BIGINT NOT NULL, + qid BIGINT, + vid BIGINT, + tid BIGINT, + publisher VARCHAR(255) NOT NULL, + language VARCHAR(2), + publication_year INTEGER NOT NULL, + publication_month INTEGER, + publication_day INTEGER, + identifier_type ENUM ('DATABASE', 'SUBSET', 'VIEW', 'TABLE') NOT NULL, + status ENUM ('DRAFT', 'PUBLISHED') NOT NULL DEFAULT ('PUBLISHED'), + query TEXT, + query_normalized TEXT, + query_hash VARCHAR(255), + execution TIMESTAMP, + result_hash VARCHAR(255), + result_number BIGINT, + doi VARCHAR(255), + created TIMESTAMP NOT NULL DEFAULT NOW(), + created_by VARCHAR(36) NOT NULL, + last_modified TIMESTAMP, + PRIMARY KEY (id), /* must be a single id from persistent identifier concept */ + FOREIGN KEY (dbid) REFERENCES mdb_databases (id), + FOREIGN KEY (created_by) REFERENCES mdb_users (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifier_licenses` + ( + pid bigint NOT NULL, + license_id VARCHAR(255) NOT NULL, + PRIMARY KEY (pid, license_id), + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id), + FOREIGN KEY (license_id) REFERENCES mdb_licenses (identifier) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifier_titles` + ( + id bigint NOT NULL AUTO_INCREMENT, + pid bigint NOT NULL, + title text NOT NULL, + title_type ENUM ('ALTERNATIVE_TITLE', 'SUBTITLE', 'TRANSLATED_TITLE', 'OTHER'), + language VARCHAR(2), + PRIMARY KEY (id), + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifier_funders` + ( + id bigint NOT NULL AUTO_INCREMENT, + pid bigint NOT NULL, + funder_name VARCHAR(255) NOT NULL, + funder_identifier TEXT, + funder_identifier_type ENUM ('CROSSREF_FUNDER_ID', 'GRID', 'ISNI', 'ROR', 'OTHER'), + scheme_uri text, + award_number VARCHAR(255), + award_title text, + language VARCHAR(255), + PRIMARY KEY (id), + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifier_descriptions` + ( + id bigint NOT NULL AUTO_INCREMENT, + pid bigint NOT NULL, + description text NOT NULL, + description_type ENUM ('ABSTRACT', 'METHODS', 'SERIES_INFORMATION', 'TABLE_OF_CONTENTS', 'TECHNICAL_INFO', 'OTHER'), + language VARCHAR(2), + PRIMARY KEY (id), + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_related_identifiers` + ( + id bigint NOT NULL AUTO_INCREMENT, + pid bigint NOT NULL, + value varchar(255) NOT NULL, + type varchar(255) NOT NULL, + relation varchar(255) NOT NULL, + PRIMARY KEY (id), /* must be a single id from persistent identifier concept */ + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id), + UNIQUE (pid, value) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_identifier_creators` + ( + id bigint NOT NULL AUTO_INCREMENT, + pid bigint NOT NULL, + given_names text, + family_name text, + creator_name VARCHAR(255) NOT NULL, + name_type ENUM ('PERSONAL', 'ORGANIZATIONAL') default 'PERSONAL', + name_identifier text, + name_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI', 'ORCID'), + name_identifier_scheme_uri text, + affiliation VARCHAR(255), + affiliation_identifier text, + affiliation_identifier_scheme ENUM ('ROR', 'GRID', 'ISNI'), + affiliation_identifier_scheme_uri text, + PRIMARY KEY (id), + FOREIGN KEY (pid) REFERENCES mdb_identifiers (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_update` + ( + uUserID character varying(255) NOT NULL, + uDBID bigint NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (uUserID, uDBID), + FOREIGN KEY (uDBID) REFERENCES mdb_databases (id) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_access` + ( + aUserID character varying(255) NOT NULL, + aDBID bigint REFERENCES mdb_databases (id), + attime TIMESTAMP, + download BOOLEAN, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (aUserID, aDBID) + ) WITH SYSTEM VERSIONING; + + CREATE TABLE IF NOT EXISTS `mdb_have_access` + ( + user_id character varying(36) NOT NULL, + database_id bigint REFERENCES mdb_databases (id), + access_type ENUM ('READ', 'WRITE_OWN', 'WRITE_ALL') NOT NULL, + created timestamp NOT NULL DEFAULT NOW(), + PRIMARY KEY (user_id, database_id), + FOREIGN KEY (user_id) REFERENCES mdb_users (id) + ) WITH SYSTEM VERSIONING; + + COMMIT; + BEGIN; + + INSERT INTO `mdb_licenses` (identifier, uri, description) + VALUES ('CC0-1.0', 'https://creativecommons.org/publicdomain/zero/1.0/legalcode', + 'CC0 waives copyright interest in a work you''ve created and dedicates it to the world-wide public domain. Use CC0 to opt out of copyright entirely and ensure your work has the widest reach.'), + ('CC-BY-4.0', 'https://creativecommons.org/licenses/by/4.0/legalcode', + 'The Creative Commons Attribution license allows re-distribution and re-use of a licensed work on the condition that the creator is appropriately credited.'); + + INSERT INTO `mdb_images` (name, registry, version, default_port, dialect, driver_class, jdbc_method) + VALUES ('mariadb', 'docker.io', '11.1.3', 3306, 'org.hibernate.dialect.MariaDBDialect', 'org.mariadb.jdbc.Driver', + 'mariadb'); + + INSERT INTO `mdb_images_date` (iid, database_format, unix_format, example, has_time) + VALUES (1, '%Y-%c-%d %H:%i:%S.%f', 'yyyy-MM-dd HH:mm:ss.SSSSSS', '2022-01-30 13:44:25.499', true), + (1, '%Y-%c-%d %H:%i:%S', 'yyyy-MM-dd HH:mm:ss', '2022-01-30 13:44:25', true), + (1, '%Y-%c-%d', 'yyyy-MM-dd', '2022-01-30', false), + (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true), + (1, '%d.%c.%Y', 'dd.MM.yyyy', '30.01.2022', false); + + INSERT INTO `mdb_ontologies` (prefix, uri, uri_pattern, sparql_endpoint, rdf_path) + VALUES ('om', 'http://www.ontology-of-units-of-measure.org/resource/om-2/', + 'http://www.ontology-of-units-of-measure.org/resource/om-2/.*', null, 'rdf/om-2.0.rdf'), + ('wd', 'http://www.wikidata.org/', 'http://www.wikidata.org/entity/.*', 'https://query.wikidata.org/sparql', + null), + ('mo', 'http://purl.org/ontology/mo/', 'http://purl.org/ontology/mo/.*', null, null), + ('dc', 'http://purl.org/dc/elements/1.1/', null, null, null), + ('xsd', 'http://www.w3.org/2001/XMLSchema#', null, null, null), + ('tl', 'http://purl.org/NET/c4dm/timeline.owl#', null, null, null), + ('foaf', 'http://xmlns.com/foaf/0.1/', null, null, null), + ('schema', 'http://schema.org/', null, null, null), + ('rdf', 'http://www.w3.org/1999/02/22-rdf-syntax-ns#', null, null, null), + ('rdfs', 'http://www.w3.org/2000/01/rdf-schema#', null, null, null), + ('owl', 'http://www.w3.org/2002/07/owl#', null, null, null), + ('prov', 'http://www.w3.org/ns/prov#', null, null, null), + ('db', 'http://dbpedia.org', 'http://dbpedia.org/ontology/.*', 'http://dbpedia.org/sparql', null); + COMMIT; diff --git a/helm/dbrepo/templates/auth-configmap.yaml b/helm/dbrepo/templates/auth-configmap.yaml index 948b31e77d..ae70a45572 100644 --- a/helm/dbrepo/templates/auth-configmap.yaml +++ b/helm/dbrepo/templates/auth-configmap.yaml @@ -2287,20 +2287,20 @@ data: "fullSyncPeriod" : [ "-1" ], "pagination" : [ "false" ], "startTls" : [ "false" ], - "usersDn" : [ "ou=users,dc=dbrepo,dc=at" ], + "usersDn" : [ "ou=users,{{ .Values.identityservice.global.ldapDomain }}" ], "connectionPooling" : [ "true" ], "cachePolicy" : [ "DEFAULT" ], "useKerberosForPasswordAuthentication" : [ "false" ], "importEnabled" : [ "true" ], "enabled" : [ "true" ], - "bindDn" : [ "cn=admin,dc=dbrepo,dc=at" ], - "bindCredential" : [ "admin" ], + "bindDn" : [ "cn={{ .Values.identityservice.global.adminUser }},{{ .Values.identityservice.global.ldapDomain }}" ], + "bindCredential" : [ "{{ .Values.identityservice.global.adminPassword }}" ], "usernameLDAPAttribute" : [ "uid" ], "changedSyncPeriod" : [ "-1" ], "lastSync" : [ "1719252666" ], "vendor" : [ "other" ], "uuidLDAPAttribute" : [ "entryUUID" ], - "connectionUrl" : [ "ldap://identity-service:1389" ], + "connectionUrl" : [ "ldap://identity-service:389" ], "allowKerberosAuthentication" : [ "false" ], "syncRegistrations" : [ "true" ], "authType" : [ "simple" ], diff --git a/helm/dbrepo/templates/metadata-configmap.yaml b/helm/dbrepo/templates/metadata-configmap.yaml index 9fd137bb39..1a5f0ab96e 100644 --- a/helm/dbrepo/templates/metadata-configmap.yaml +++ b/helm/dbrepo/templates/metadata-configmap.yaml @@ -44,10 +44,12 @@ data: dialect character varying(255) NOT NULL, driver_class character varying(255) NOT NULL, jdbc_method character varying(255) NOT NULL, + is_default BOOLEAN NOT NULL DEFAULT FALSE, created timestamp NOT NULL DEFAULT NOW(), last_modified timestamp, PRIMARY KEY (id), - UNIQUE (name, version) + UNIQUE (name, version), + UNIQUE (is_default) ) WITH SYSTEM VERSIONING; CREATE TABLE IF NOT EXISTS `mdb_images_date` @@ -81,6 +83,7 @@ data: last_modified timestamp, privileged_username character varying(255) NOT NULL, privileged_password character varying(255) NOT NULL, + quota integer NOT NULL DEFAULT 50, PRIMARY KEY (id), FOREIGN KEY (image_id) REFERENCES mdb_images (id) ) WITH SYSTEM VERSIONING; @@ -266,6 +269,7 @@ data: cid BIGINT NOT NULL, rcid BIGINT NOT NULL, PRIMARY KEY (id), + UNIQUE (fkid, cid, rcid), FOREIGN KEY (fkid) REFERENCES mdb_constraints_foreign_key (fkid) ON UPDATE CASCADE, FOREIGN KEY (cid) REFERENCES mdb_columns (id), FOREIGN KEY (rcid) REFERENCES mdb_columns (id) @@ -555,7 +559,8 @@ data: VALUES (1, '%Y-%c-%d %H:%i:%S.%f', 'yyyy-MM-dd HH:mm:ss.SSSSSS', '2022-01-30 13:44:25.499', true), (1, '%Y-%c-%d %H:%i:%S', 'yyyy-MM-dd HH:mm:ss', '2022-01-30 13:44:25', true), (1, '%Y-%c-%d', 'yyyy-MM-dd', '2022-01-30', false), - (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true); + (1, '%H:%i:%S', 'HH:mm:ss', '13:44:25', true), + (1, '%d.%c.%Y', 'dd.MM.yyyy', '30.01.2022', false); INSERT INTO `mdb_ontologies` (prefix, uri, uri_pattern, sparql_endpoint, rdf_path) VALUES ('om', 'http://www.ontology-of-units-of-measure.org/resource/om-2/', -- GitLab