diff --git a/lib/python/.gitignore b/lib/python/.gitignore
index 1f4bb524a1c7dfe8ec62be60b755993e13f7dedc..b11bfe061cb8fd2c97c9195211a8ba08ed1ae0ee 100644
--- a/lib/python/.gitignore
+++ b/lib/python/.gitignore
@@ -7,6 +7,7 @@ dbrepo.egg-info/
build/
htmlcov/
tmp-*
+report.xml
# debug
debug.py
@@ -15,9 +16,8 @@ debug.py
.pypirc
# coverage
-coverage.txt
+coverage.*
.coverage
-report.xml
# environment
.env
diff --git a/lib/python/coverage.xml b/lib/python/coverage.xml
deleted file mode 100644
index ac21b0bc1ed6b9f659ba578333c89e481c34ca8f..0000000000000000000000000000000000000000
--- a/lib/python/coverage.xml
+++ /dev/null
@@ -1,1866 +0,0 @@
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- <!-- Based on https://raw.githubusercontent.com/cobertura/web/master/htdocs/xml/coverage-04.dtd -->
- <sources>
- <source>/home/mweise/Projects/fda-services/lib/python</source>
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- </class>
- <class name="exceptions.py" filename="dbrepo/api/exceptions.py" complexity="0" line-rate="1" branch-rate="0">
- <methods/>
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- </package>
- </packages>
-</coverage>
diff --git a/lib/python/tests/test_unit_query.py b/lib/python/tests/test_unit_query.py
index 44f165b9b0ba36ab2375ddcd78c6c50cd363c7d9..528d6775a7e3b84a3afdceb68344518d234ba21d 100644
--- a/lib/python/tests/test_unit_query.py
+++ b/lib/python/tests/test_unit_query.py
@@ -93,14 +93,14 @@ class QueryUnitTest(unittest.TestCase):
def test_create_subset_succeeds(self):
with requests_mock.Mocker() as mock:
exp = [{'id': 1, 'username': 'foo'}, {'id': 2, 'username': 'bar'}]
- df = DataFrame.from_records(json.dumps(exp))
+ df = DataFrame.from_records(exp)
# mock
mock.get(f'/api/image/{self.image.id}', json=self.image.model_dump(),
status_code=200)
mock.get(f'/api/database/{self.database.id}', json=self.database.model_dump(),
status_code=200)
- mock.post(f'/api/database/{self.database.id}/subset', json=json.dumps(exp),
- headers={'X-Id': '1'}, status_code=201)
+ mock.post(f'/api/database/{self.database.id}/subset', json=exp,
+ headers={'X-Id': '85bc1217-29ab-4c09-9f98-8c019238a9c8'}, status_code=201)
# test
client = RestClient(username="a", password="b")
response = client.create_subset(database_id="6bd39359-b154-456d-b9c2-caa516a45732", page=0, size=10,
@@ -263,14 +263,14 @@ class QueryUnitTest(unittest.TestCase):
def test_create_subset_anonymous_succeeds(self):
with requests_mock.Mocker() as mock:
exp = [{'id': 1, 'username': 'foo'}, {'id': 2, 'username': 'bar'}]
- df = DataFrame.from_records(json.dumps(exp))
+ df = DataFrame.from_records(exp)
# mock
mock.get(f'/api/image/{self.image.id}', json=self.image.model_dump(),
status_code=200)
mock.get(f'/api/database/{self.database.id}', json=self.database.model_dump(),
status_code=200)
- mock.post(f'/api/database/{self.database.id}/subset', json=json.dumps(exp),
- headers={'X-Id': '1'}, status_code=201)
+ mock.post(f'/api/database/{self.database.id}/subset', json=exp,
+ headers={'X-Id': '85bc1217-29ab-4c09-9f98-8c019238a9c8'}, status_code=201)
# test
client = RestClient()
diff --git a/lib/python/tests/test_unit_table.py b/lib/python/tests/test_unit_table.py
index a5632f4237f2ab9a34b111e5168cebe7fc084ef6..c67b54c6144016df23a85fc6bb8fe8c46b9a0565 100644
--- a/lib/python/tests/test_unit_table.py
+++ b/lib/python/tests/test_unit_table.py
@@ -6,7 +6,7 @@ import requests_mock
from pandas import DataFrame
from dbrepo.RestClient import RestClient
-from dbrepo.api.dto import Table, CreateTableConstraints, Column, Constraints, ColumnType, ConceptBrief, UnitBrief, \
+from dbrepo.api.dto import Table, Column, Constraints, ColumnType, ConceptBrief, UnitBrief, \
TableStatistics, ColumnStatistic, PrimaryKey, ColumnBrief, TableBrief, UserBrief, History, HistoryEventType
from dbrepo.api.exceptions import MalformedError, ForbiddenError, NotExistsError, NameExistsError, \
AuthenticationError, ExternalSystemError, ServiceError, ServiceConnectionError, ResponseCodeError
@@ -25,125 +25,137 @@ class TableUnitTest(unittest.TestCase):
is_public=True,
is_schema_public=True)
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', json=exp.model_dump(),
status_code=201)
# test
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe, with_data=False,
+ is_public=True, is_schema_public=True)
self.assertEqual(exp, response)
+ def test_create_table_index_missing_fails(self):
+ with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}])
+ # test
+ client = RestClient(username="a", password="b")
+ try:
+ client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
+ description="Test Table", dataframe=dataframe, with_data=False,
+ is_public=True, is_schema_public=True)
+ except MalformedError:
+ pass
+
def test_create_table_400_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=400)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except MalformedError:
pass
def test_create_table_403_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=403)
# test
try:
RestClient(username="a", password="b").create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732",
name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except ForbiddenError:
pass
def test_create_table_404_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=404)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except NotExistsError:
pass
def test_create_table_409_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=409)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except NameExistsError:
pass
def test_create_table_502_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=502)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except ServiceConnectionError:
pass
def test_create_table_503_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=503)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except ServiceError:
pass
def test_create_table_unknown_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=200)
# test
try:
client = RestClient(username="a", password="b")
response = client.create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except ResponseCodeError:
pass
def test_create_table_anonymous_fails(self):
with requests_mock.Mocker() as mock:
+ dataframe = DataFrame.from_records([{'id': 1, 'name': 'foobar'}], index=['id'])
# mock
mock.post('/api/database/6bd39359-b154-456d-b9c2-caa516a45732/table', status_code=409)
# test
try:
response = RestClient().create_table(database_id="6bd39359-b154-456d-b9c2-caa516a45732", name="Test",
- description="Test Table", columns=[],
- is_public=True, is_schema_public=True,
- constraints=CreateTableConstraints())
+ description="Test Table", dataframe=dataframe,
+ is_public=True, is_schema_public=True)
except AuthenticationError:
pass