From 267b4f9877d937d8eb1ebcd8bfd346d059d4e424 Mon Sep 17 00:00:00 2001
From: Martin Weise <martin.weise@tuwien.ac.at>
Date: Thu, 27 Mar 2025 19:03:05 +0100
Subject: [PATCH] WIP
Signed-off-by: Martin Weise <martin.weise@tuwien.ac.at>
---
.../target/create-event-listener.jar | Bin 10143 -> 10138 bytes
dbrepo-dashboard-service/app.py | 2 +-
dbrepo-dashboard-service/dashboard.py | 306 ++----------------
dbrepo-dashboard-service/init/dashboard.py | 4 +-
.../init/tests/test_integration_dashboard.py | 2 +-
dbrepo-data-service/Dockerfile | 6 +-
dbrepo-metadata-service/Dockerfile | 33 +-
helm/dbrepo/files/create-event-listener.jar | Bin 10143 -> 10138 bytes
lib/java/dbrepo-core/Dockerfile | 12 +
make/build.mk | 3 +-
10 files changed, 66 insertions(+), 302 deletions(-)
create mode 100644 lib/java/dbrepo-core/Dockerfile
diff --git a/dbrepo-auth-service/listeners/target/create-event-listener.jar b/dbrepo-auth-service/listeners/target/create-event-listener.jar
index 9fa1288598118b348a3341e591558b66152c43b3..9defdad744bc4cb391b2ea104502106d0011f6af 100644
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diff --git a/dbrepo-dashboard-service/app.py b/dbrepo-dashboard-service/app.py
index 94f838e2b4..fe5d8218b0 100644
--- a/dbrepo-dashboard-service/app.py
+++ b/dbrepo-dashboard-service/app.py
@@ -216,7 +216,7 @@ def create_dashboard():
logging.debug(
f"endpoint create dashboard, is_public={is_public}, is_schema_public={is_schema_public}, owner_username={owner_username}")
try:
- db = dashboard.create(request.json['database_name'], request.json['owner_username'])
+ db = dashboard.create(request.json['database_name'])
access.update_anonymous_read_access(db['uid'], is_public, is_schema_public)
return Response(dumps(db)), 201, headers
except GrafanaClientError as e:
diff --git a/dbrepo-dashboard-service/dashboard.py b/dbrepo-dashboard-service/dashboard.py
index a170e63dbb..8ff4b47c49 100644
--- a/dbrepo-dashboard-service/dashboard.py
+++ b/dbrepo-dashboard-service/dashboard.py
@@ -1,37 +1,30 @@
import logging
import os
-from dbrepo.api.dto import Database, View
+from dbrepo.api.dto import Database
+from dbrepo.api.exceptions import MalformedError
+from grafana_client.client import GrafanaClientError
+from api.exceptions import DashboardNotFound
from clients.grafana_client import GrafanaClient
-
-statistics_row_title = '${view_id}'
+from panel import get_panels
base_url = os.getenv('BASE_URL', 'http://localhost')
datasource_uid = os.getenv('JSON_DATASOURCE_NAME', 'dbrepojson0')
-def map_link(title: str, url: str) -> dict:
+def map_link(title: str, url: str, icon: str = 'info') -> dict:
return dict(targetBlank=True,
asDropdown=False,
includeVars=False,
keepTime=False,
tags=[],
type='link',
- icon='info',
+ icon=icon,
title=title,
url=url)
-def map_statistics_row(dashboard: dict) -> dict | None:
- filtered_panels = [panel for panel in dashboard['panels'] if
- panel['type'] == 'row' and panel['title'] == statistics_row_title]
- if len(filtered_panels) == 0:
- logging.warning(f"Failed to find statistics row title {statistics_row_title} in: {filtered_panels}")
- return None
- return filtered_panels[0]
-
-
def map_links(database: Database) -> [dict]:
links = []
if len(database.identifiers) > 0:
@@ -41,275 +34,30 @@ def map_links(database: Database) -> [dict]:
return links
-def map_templating(database: Database) -> dict:
- options = [dict(selected=False,
- text=view.name,
- value=str(view.id)) for view in database.views]
- selected = dict(selected=True,
- text=[view.name for view in database.views],
- value=[str(view.id) for view in database.views])
- datasource = dict(uid=datasource_uid,
- type='yesoreyeram-infinity-datasource')
- return dict(list=[dict(description='',
- name='view_id',
- hide=0,
- includeAll=True,
- multi=True,
- datasource=datasource,
- refresh=1,
- regex='',
- sort=0,
- definition='dbrepo-json- (infinity) json',
- query=dict(queryType='infinity',
- query='',
- infinityQuery=dict(format='table',
- filters=[],
- parser='backend',
- refId='variable',
- root_selector='',
- source='url',
- type='json',
- url=f"/api/database/{database.id}/view",
- columns=[dict(selector='id',
- text='value',
- type='string'),
- dict(
- selector='internal_name',
- text='name',
- type='string')],
- url_options=dict(data='',
- method='GET'))),
- label='Datasource',
- skipUrlSync=False,
- type='query',
- current=selected,
- options=options)])
-
-
-def map_timeseries_panel(database: Database, view: View) -> dict:
- datasource = dict(uid=datasource_uid,
- type='yesoreyeram-infinity-datasource')
- return dict(
- title=view['name'],
- type='timeseries',
- datasource=datasource,
- targets=[dict(datasource=datasource,
- format='table',
- global_query_id='',
- hide=False,
- refId='A',
- root_selector='',
- source='url',
- type='json',
- url=f"/api/database/{database['id']}/view/{view['id']}",
- url_options=dict(data='',
- method='GET'))],
- gridPos=dict(h=8,
- w=12,
- x=0,
- y=0),
- options=dict(legend=dict(displayMode='list',
- placement='bottom',
- showLegend=True),
- tooltip=dict(mode='single',
- sort='none')),
- fieldConfig=dict(
- defaults=dict(color=dict(mode='palette-classic'),
- custom=dict(
- axisBorderShow=False,
- axisCenteredZero=False,
- axisColorMode='text',
- axisLabel='',
- axisPlacement='auto',
- barAlignment=0,
- drawStyle='line',
- fillOpacity=0,
- gradientMode='none',
- hideFrom=dict(legend=False,
- tooltip=False,
- viz=False),
- insertNulls=False,
- lineInterpolation='linear',
- lineWidth=1,
- pointSize=5,
- scaleDistribution=dict(type='linear'),
- showPoints='auto',
- spanNulls=False,
- stacking=dict(group='A',
- mode='none'),
- thresholdsStyle=dict(mode='absolute')))))
-
-
-def map_statistics_panel(database_id: str, view: View) -> dict:
- datasource = dict(uid=datasource_uid,
- type='yesoreyeram-infinity-datasource')
- return dict(
- title=view.name,
- type='table',
- datasource=datasource,
- targets=[dict(datasource=datasource,
- columns=[],
- filters=[],
- format='table',
- global_query_id='',
- hide=False,
- refId='A',
- root_selector='',
- source='url',
- type='json',
- url=f"/api/database/{database_id}/view/{view.id}/data",
- url_options=dict(data='',
- method='GET'))],
- options=dict(cellHeight="sm",
- showHeader=True,
- footer=dict(countRows=False,
- fields="",
- reducer=["sum"],
- show=False)),
- gridPos=dict(h=8,
- w=12,
- x=12,
- y=0),
- transformations=dict(id="organize",
- options=dict(excludeByName=dict(),
- includeByName=dict(),
- indexByName=dict(
- HEADER_AVG=3,
- HEADER_COL=0,
- HEADER_STDDEV=4,
- HEADER_MAX=2,
- HEADER_MIN=1))),
- fieldConfig=dict(defaults=dict(custom=dict(align="auto",
- filterable="true",
- cellOptions=dict(type="auto"),
- inspect=False),
- mappings=[],
- thresholds=dict(mode="absolute",
- steps=[dict(color="green",
- value=None),
- dict(color="red",
- value=80)
- ])),
- overrides=[dict(matcher=dict(id="byName",
- options="HEADER_COL"),
- properties=[dict(id="custom.align",
- value="center")]),
- dict(matcher=dict(id="byName",
- options="HEADER_MIN"),
- properties=[dict(id="custom.width",
- value=115)]),
- dict(matcher=dict(id="byName",
- options="HEADER_MAX"),
- properties=[dict(id="custom.width",
- value=115)]),
- dict(matcher=dict(id="byName",
- options="HEADER_AVG"),
- properties=[dict(id="custom.width",
- value=115)]),
- dict(matcher=dict(id="byName",
- options="HEADER_STDDEV"),
- properties=[dict(id="custom.width",
- value=115)])
- ]))
-
-
-def map_overview_panel(database_id: str) -> dict:
- datasource = dict(uid=datasource_uid,
- type='yesoreyeram-infinity-datasource')
- return dict(title='Preview',
- type='table',
- fieldConfig=dict(
- defaults=dict(
- color=dict(mode='palette-classic'),
- custom=dict(axisBorderShow=False,
- axisCenteredZero=False,
- axisColorMode='text',
- axisLabel='',
- axisPlacement='auto',
- barAlignment=0,
- drawStyle='line',
- fillOpacity=0,
- gradientMode='none',
- hideFrom=dict(
- legend=False,
- tooltip=False,
- viz=False),
- insertNulls=False,
- lineInterpolation='linear',
- lineWidth=1,
- pointSize=5,
- scaleDistribution=dict(
- type='linear'),
- showPoints='auto',
- spanNulls=False,
- stacking=dict(group='A',
- mode='none'),
- thresholdsStyle=dict(
- mode='off'))),
- overrides=[]),
- options=dict(legend=dict(displayMode='list',
- placement='bottom',
- showLegend=True,
- calcs=[]),
- tooltip=dict(mode='single',
- sort='none')),
- targets=[dict(format='json',
- columns=[],
- datasource=datasource,
- filters=[],
- global_query_id='',
- refId='A',
- root_selector='',
- source='url',
- type='json',
- url='/api/database/' + database_id + '/view/${view_id}/data',
- url_options=dict(data='',
- method='GET'))],
- datasource=datasource,
- gridPos=dict(h=4,
- w=12,
- x=0,
- y=0))
-
-
-def map_row() -> dict:
- datasource = dict(uid=datasource_uid,
- type='yesoreyeram-infinity-datasource')
- return dict(collapsed=False,
- repeat='view_id',
- repeatDirection='h',
- title=statistics_row_title,
- type='row',
- panels=[],
- targets=[dict(refId='A',
- datasource=datasource)],
- gridPos=dict(h=1,
- w=24,
- x=0,
- y=0))
-
-
-def map_panels(dashboard: dict, database: Database) -> [dict]:
- if map_statistics_row(dashboard) is None:
- dashboard['panels'].append(map_row())
- dashboard['panels'].append(map_overview_panel(database.id))
- for view in database.views:
- dashboard['panels'].append(map_statistics_panel(database.id, view))
- return dashboard['panels']
-
-
def find(uid: str):
+ """
+ Finds a dashboard with the given uid.
+
+ @return The dashboard, if successful. Otherwise, `None`.
+ """
+ if uid is None:
+ return None
grafana = GrafanaClient().connect()
- return grafana.dashboard.get_dashboard(uid)
+ try:
+ return grafana.dashboard.get_dashboard(uid)
+ except GrafanaClientError:
+ logging.warning(f"Failed to find dashboard with uid: {uid}")
+ return None
def create(database_name: str, uid: str = '') -> dict:
grafana = GrafanaClient().connect()
dashboard = dict(uid=uid,
title=f'{database_name} Overview',
- tags=['dbrepo'],
+ tags=['managed'],
timezone='browser',
- fiscalYearStartMonth=1,
+ refresh='30m',
+ preload=False,
panels=[])
dashboard['panels'] = []
payload = dict(folderUid='',
@@ -327,16 +75,20 @@ def delete(uid: str) -> None:
def update(database: Database) -> None:
grafana = GrafanaClient().connect()
- dashboard = find(database.dashboard_uid)['dashboard']
+ dashboard = find(database.dashboard_uid)
+ if dashboard is None:
+ raise DashboardNotFound(f'Dashboard {database.dashboard_uid} not found')
+ dashboard = dashboard['dashboard']
# update metadata
+ if not database.is_dashboard_enabled and 'managed' in dashboard['tags']:
+ dashboard['tags'].remove('managed')
if len(database.identifiers) > 0 and len(database.identifiers[0].titles) > 0:
dashboard['title'] = database.identifiers[0].titles[0].title
if len(database.identifiers) > 0 and len(database.identifiers[0].descriptions) > 0:
dashboard['description'] = database.identifiers[0].descriptions[0].description
dashboard['links'] = map_links(database)
- dashboard['templating'] = map_templating(database)
# update panels
- dashboard['panels'] = map_panels(dashboard, database)
+ dashboard['panels'] = get_panels(dashboard, database)
payload = dict(folderUid='',
overwrite=True,
dashboard=dashboard)
diff --git a/dbrepo-dashboard-service/init/dashboard.py b/dbrepo-dashboard-service/init/dashboard.py
index a7c03894e4..8ff4b47c49 100644
--- a/dbrepo-dashboard-service/init/dashboard.py
+++ b/dbrepo-dashboard-service/init/dashboard.py
@@ -50,7 +50,7 @@ def find(uid: str):
return None
-def create(database_name: str, uid: str = '') -> str:
+def create(database_name: str, uid: str = '') -> dict:
grafana = GrafanaClient().connect()
dashboard = dict(uid=uid,
title=f'{database_name} Overview',
@@ -65,7 +65,7 @@ def create(database_name: str, uid: str = '') -> str:
dashboard=dashboard)
dashboard = grafana.dashboard.update_dashboard(payload)
logging.info(f"Created dashboard with uid: {dashboard['uid']}")
- return dashboard['uid']
+ return dashboard
def delete(uid: str) -> None:
diff --git a/dbrepo-dashboard-service/init/tests/test_integration_dashboard.py b/dbrepo-dashboard-service/init/tests/test_integration_dashboard.py
index 1ae27faae0..da6071f13b 100644
--- a/dbrepo-dashboard-service/init/tests/test_integration_dashboard.py
+++ b/dbrepo-dashboard-service/init/tests/test_integration_dashboard.py
@@ -108,7 +108,7 @@ class DashboardIntegrationTest(unittest.TestCase):
def test_create_succeeds(self):
# test
- dashboard.create('some_database', 'foobar')
+ dashboard.create('some_database')
def test_create_with_uid_succeeds(self):
# test
diff --git a/dbrepo-data-service/Dockerfile b/dbrepo-data-service/Dockerfile
index 9edf1375fb..233e1f43c4 100644
--- a/dbrepo-data-service/Dockerfile
+++ b/dbrepo-data-service/Dockerfile
@@ -1,5 +1,5 @@
###### FIRST STAGE ######
-FROM dbrepo-metadata-service:build AS dependency
+FROM dbrepo-core:build AS dependency
LABEL org.opencontainers.image.authors="martin.weise@tuwien.ac.at"
###### SECOND STAGE ######
@@ -10,7 +10,7 @@ COPY ./pom.xml ./
RUN mvn -fn dependency:go-offline
-COPY --from=dependency /root/.m2/repository/at/tuwien /root/.m2/repository/at/tuwien
+COPY --from=dependency /root/.m2/repository/at/ac/tuwien/ifs/dbrepo /root/.m2/repository/at/ac/tuwien/ifs/dbrepo
COPY ./querystore ./querystore
COPY ./report ./report
@@ -28,7 +28,7 @@ RUN apk add --no-cache curl bash jq
WORKDIR /app
-RUN adduser -S -u 1001 data-service
+RUN adduser -S -u 1001 dbrepo
USER 1001
diff --git a/dbrepo-metadata-service/Dockerfile b/dbrepo-metadata-service/Dockerfile
index fa92b799ee..9bcf0d75c7 100644
--- a/dbrepo-metadata-service/Dockerfile
+++ b/dbrepo-metadata-service/Dockerfile
@@ -1,32 +1,27 @@
###### FIRST STAGE ######
+FROM dbrepo-core:build AS dependency
+LABEL org.opencontainers.image.authors="martin.weise@tuwien.ac.at"
+
+###### SECOND STAGE ######
FROM maven:3-amazoncorretto-17 AS build
LABEL org.opencontainers.image.authors="martin.weise@tuwien.ac.at"
COPY ./pom.xml ./
-COPY ./api/pom.xml ./api/
-COPY ./entities/pom.xml ./entities/
-COPY ./oai/pom.xml ./oai/
-COPY ./report/pom.xml ./report/
-COPY ./repositories/pom.xml ./repositories/
-COPY ./rest-service/pom.xml ./rest-service/
-COPY ./services/pom.xml ./services/
-COPY ./test/pom.xml ./test/
-
-RUN mvn dependency:go-offline
-
-COPY ./api ./api
-COPY ./entities ./entities
+
+RUN mvn -fn dependency:go-offline
+
+COPY --from=dependency /root/.m2/repository/at/ac/tuwien/ifs/dbrepo /root/.m2/repository/at/ac/tuwien/ifs/dbrepo
+
COPY ./oai ./oai
COPY ./report ./report
COPY ./repositories ./repositories
COPY ./rest-service ./rest-service
COPY ./services ./services
-COPY ./test ./test
# Make sure it compiles
-RUN mvn clean install -DskipTests
+RUN mvn -fn clean package -DskipTests
-###### SECOND STAGE ######
+###### THIRD STAGE ######
FROM amazoncorretto:17-alpine3.19 AS runtime
LABEL org.opencontainers.image.authors="martin.weise@tuwien.ac.at"
@@ -34,6 +29,8 @@ RUN apk add --no-cache curl bash jq
WORKDIR /app
+RUN adduser -S -u 1001 dbrepo
+
USER 1001
COPY --from=build --chown=1001 ./rest-service/target/dbrepo-metadata-service-rest-service-*.jar ./metadata-service.jar
@@ -41,4 +38,6 @@ COPY --from=build --chown=1001 ./rest-service/target/dbrepo-metadata-service-res
# non-root port
EXPOSE 8080
-ENTRYPOINT ["java", "-Dlog4j2.formatMsgNoLookups=true", "-jar", "./metadata-service.jar"]
+ENV JAVA_OPTS="-Dlog4j2.formatMsgNoLookups=true"
+
+ENTRYPOINT exec java $JAVA_OPTS -jar ./metadata-service.jar
\ No newline at end of file
diff --git a/helm/dbrepo/files/create-event-listener.jar b/helm/dbrepo/files/create-event-listener.jar
index 9fa1288598118b348a3341e591558b66152c43b3..9defdad744bc4cb391b2ea104502106d0011f6af 100644
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diff --git a/lib/java/dbrepo-core/Dockerfile b/lib/java/dbrepo-core/Dockerfile
new file mode 100644
index 0000000000..8a6348bbce
--- /dev/null
+++ b/lib/java/dbrepo-core/Dockerfile
@@ -0,0 +1,12 @@
+###### FIRST STAGE ######
+FROM maven:3-amazoncorretto-17 AS build
+LABEL org.opencontainers.image.authors="martin.weise@tuwien.ac.at"
+
+COPY ./pom.xml ./
+
+RUN mvn dependency:go-offline
+
+COPY ./src/ ./src/
+
+# Make sure it compiles
+RUN mvn clean install -DskipTests
\ No newline at end of file
diff --git a/make/build.mk b/make/build.mk
index 96cd6392d5..48e9212a6a 100644
--- a/make/build.mk
+++ b/make/build.mk
@@ -2,8 +2,9 @@
.PHONY: build-images
build-images: ## Build Docker images.
- docker build --network=host -t dbrepo-metadata-service:build --target build dbrepo-metadata-service
+ docker build --network=host -t dbrepo-core:build --target build ./lib/java/dbrepo-core
docker build --network=host -t dbrepo-data-service:build --target build dbrepo-data-service
+ docker build --network=host -t dbrepo-metadata-service:build --target build dbrepo-metadata-service
docker compose build --parallel
.PHONY: build-data-service
--
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