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Commit 16815317 authored by Martin Weise's avatar Martin Weise
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Added license, updated README 

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README.md
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[![pipeline status](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/badges/master/pipeline.svg)](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/commits/master) [![coverage report](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/badges/master/coverage.svg)](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/commits/master)
[![pipeline status](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/badges/master/pipeline.svg)](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/commits/master)
[![coverage report](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/badges/master/coverage.svg)](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-services/-/commits/master)
[![license](.gitlab/license.svg)](http://creativecommons.org/licenses/by/4.0/)
# FAIR Data Austria Services
## Install
Pull the latest dev/master images on your client through:
```bash
docker login https://docker.martinweise.at
> Username: fda
> Password: fda-docker
```
The `dev` branch images have suffix `:latest` (=optional), to pull them execute the following
```bash
docker pull docker.martinweise.at/fda-analyse-service:latest
docker pull docker.martinweise.at/fda-discovery-server:latest
docker pull docker.martinweise.at/fda-gateway-service:latest
docker pull docker.martinweise.at/fda-database-managing-service:latest
docker pull docker.martinweise.at/fda-container-managing-service:latest
docker pull docker.martinweise.at/fda-query-service:latest
docker pull docker.martinweise.at/fda-table-service:latest
docker pull docker.martinweise.at/fda-ui:latest
```
The `master` branch images have suffix `:stable`, they are pulled similar:
```bash
docker pull docker.martinweise.at/fda-analyse-service:stable
...
```
Note: the domain martinweise.at is private and I do not own any of these images, it is just a necessary condition for Docker to pull from a (private, non-public) remote repository! The domain should of course be changed before release!
# FAIR Data Austria Database Repository
## Build
Everything is handled by compose, just build it by running:
Everything is handled by Docker Compose, just build it by executing:
```bash
docker-compose build
```
Local development minimum requirements:
- Ubuntu 18.04 LTS
- Apache Maven 3.0.0
- OpenJDK 11.0.0
Local deployment minimum versions:
- Docker Engine 20.10.0
- Docker Compose 1.28.0
## Deployment
The pipeline is set-up to build and test all commits. A commit to dev or master branch triggers additional jobs.
### Development
A commit to `dev` triggers the following pipeline. It deploys the docker images to the docker registry hosted on the fda-runner server and deploys it also to a test server (fda-deployment) at TU Wien.
![pipeline dev](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-docs/-/raw/master/figures/fda-pipeline-dev.png)
### Production
A commit to `master` triggers the following pipeline. It deploys the docker images to the docker registry hosted on the fda-runner server and deploys it also to a production server tbd.
![pipeline master](https://gitlab.phaidra.org/fair-data-austria-db-repository/fda-docs/-/raw/master/figures/fda-pipeline-prod.png)
## Start
Now start all services by running:
After build, the system can be started by executing:
```bash
docker-compose up
docker-compose up -d
```
### Troubleshooting
##### FDA Runner
## Development
Hosted at TU Wien 128.130.202.89, only accessible from TU-Network
**Important**
Different MTU for HPC Cluster, edit for Docker to work with bridge mode the `/etc/docker/daemon.json`:
```bash
{
"mtu": 1450
}
```
Local development minimum requirements:
##### Virtual Machine
- Ubuntu 18.04 LTS (RPM-based operating systems are also tested)
- Apache Maven 3.0.0
- OpenJDK 11.0.0
Ubuntu 20.04 LTS
The backend endpoints are accessible in the browser:
Use openjdk-11...openjdk-8 does not work.
- [Image Endpoint](http://localhost:9091/swagger-ui/)
- [Container Endpoint](http://localhost:9091/swagger-ui/)
- [Database Endpoint](http://localhost:9092/swagger-ui/)
- [Query Endpoint](http://localhost:9093/swagger-ui/)
- [Table Endpoint](http://localhost:9094/swagger-ui/)
Do not use maven provided my Ubuntu 20.4 LTS. It cannot handle those injections spring-boot wants it to do.
The frontend is accessible in the browser:
It says: WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)
- [FAIR Portal](http://localhost:3000)
Install maven from Apache Org.:
Other:
Download maven e.g. 3.6.3
- [Discovery Endpoint](http://localhost:9090/) (Eureka)
- [Gateway Endpoint](http://localhost:9095/swagger-ui/) (Webflux)
```bash
wget https://www-us.apache.org/dist/maven/maven-3/3.6.3/binaries/apache-maven-3.6.3-bin.tar.gz -P /tmp
```
## Deployment
Untar downloaded file to /opt
Local deployment minimum versions:
```bash
sudo tar xf /tmp/apache-maven-*.tar.gz -C /opt
```
- Docker Engine 20.10.0
- Docker Compose 1.28.0
Install the alternative version for the mvn in your system
# Contribute
```bash
sudo update-alternatives --install /usr/bin/mvn mvn /opt/apache-maven-3.6.3/bin/mvn 363
```
Contributions are always welcome and encouraged, simply fork the repository and contact [Andreas Rauber](http://www.ifs.tuwien.ac.at/~andi/).
Check if your configuration is ok. You may use your current or the 3.6.3 whenever you wish, running the command below.
# License
```bash
sudo update-alternatives --config mvn
```
This work is licensed under a [Creative Commons Attribution 4.0 International License](http://creativecommons.org/licenses/by/4.0/)
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