Skip to content
Snippets Groups Projects
Select Git revision
  • 3e467cc013eaf9a82acde3ee56671beb40ee373a
  • master default protected
  • dev protected
  • release-1.10 protected
  • 549-test-oai-pmh
  • 545-saving-multiple-times-breaks-pid-metadata
  • release-1.9 protected
  • 499-standalone-compute-service-2
  • 539-load-tests
  • hotfix/helm-chart
  • luca_ba_new_interface
  • 534-bug-when-adding-access-to-user-that-is-not-registered-at-dashboard-service
  • release-1.8 protected
  • 533-integrate-semantic-recommendation
  • feature/openshift
  • 518-spark-doesn-t-map-the-headers-correct
  • 485-fixity-checks
  • 530-various-schema-problems-with-subsets
  • release-1.7 protected
  • fix/auth-service
  • fix/pid-list
  • v1.10.1 protected
  • v1.10.0-rc13 protected
  • v1.10.0-rc12 protected
  • v1.10.0-rc11 protected
  • v1.10.0-rc10 protected
  • v1.10.0-rc9 protected
  • v1.10.0-rc8 protected
  • v1.10.0-rc7 protected
  • v1.10.0-rc6 protected
  • v1.10.0-rc5 protected
  • v1.10.0-rc4 protected
  • v1.10.0-rc3 protected
  • v1.10.0-rc2 protected
  • v1.10.0rc1 protected
  • v1.10.0rc0 protected
  • v1.10.0 protected
  • v1.9.3 protected
  • v1.9.2 protected
  • v1.9.2-rc0 protected
  • v1.9.1 protected
41 results

fda-services

FAIR Data Austria Services

Install

Pull the latest dev/master images on your client through:

docker login https://docker.martinweise.at
> Username: fda
> Password: fda-docker
docker pull docker.martinweise.at/fda-analyse-service
docker pull docker.martinweise.at/fda-discovery-server
docker pull docker.martinweise.at/fda-gateway-service
docker pull docker.martinweise.at/fda-database-managing-service
docker pull docker.martinweise.at/fda-container-managing-service
docker pull docker.martinweise.at/fda-query-service
docker pull docker.martinweise.at/fda-table-service
docker pull docker.martinweise.at/fda-ui

Build

Everything is handled by compose, just build it by running:

docker-compose build

Develop

The endpoints are documented with Swagger 2.1 and OpenAPI 3.0. The current specification for the front-end is obtainable programatically from http://localhost:<port>/swagger-resources

For easy visualization use OpenAPI at:

Deployment

The pipeline is set-up to build and test all commits. A commit to dev or master branch triggers additional jobs.

A commit to dev triggers the following pipeline. It deploys the docker images to the docker registry hosted on the fda-runner server and deploys it also to a test server (fda-deployment) at TU Wien.

pipeline dev

Production

A commit to master triggers the following pipeline. It deploys the docker images to the docker registry hosted on the fda-runner server and deploys it also to a production server tbd.

pipeline master

Start

Now start all services by running:

docker-compose up

Troubleshooting

FDA Runner

Hosted at TU Wien 128.130.202.89, only accessible from TU-Network

Important

Different MTU for HPC Cluster, edit for Docker to work with bridge mode the /etc/docker/daemon.json:

{
    "mtu": 1450
}
Virtual Machine

Ubuntu 20.04 LTS

Use openjdk-11...openjdk-8 does not work.

Do not use maven provided my Ubuntu 20.4 LTS. It cannot handle those injections spring-boot wants it to do.

It says: WARNING: An illegal reflective access operation has occurred WARNING: Illegal reflective access by com.google.inject.internal.cglib.core.$ReflectUtils$1 (file:/usr/share/maven/lib/guice.jar) to method java.lang.ClassLoader.defineClass(java.lang.String,byte[],int,int,java.security.ProtectionDomain)

Install maven from Apache Org.:

Download maven e.g. 3.6.3

wget https://www-us.apache.org/dist/maven/maven-3/3.6.3/binaries/apache-maven-3.6.3-bin.tar.gz -P /tmp

Untar downloaded file to /opt

sudo tar xf /tmp/apache-maven-*.tar.gz -C /opt

Install the alternative version for the mvn in your system

sudo update-alternatives --install /usr/bin/mvn mvn /opt/apache-maven-3.6.3/bin/mvn 363

Check if your configuration is ok. You may use your current or the 3.6.3 whenever you wish, running the command below.

sudo update-alternatives --config mvn